PKD1 Gene
protein-coding GIFtS : 65
GCID: GC16 M002138
polycystic kidney disease 1 (autosomal dominant)
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Aliasesfor PKD1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Polycystic Kidney Disease 1 (Autosomal Dominant) 1 2 Polycystic Kidney Disease-Associated Protein2 PBP1 2 Polycystin 12 Pc-11 2 Polycystin-11 TRPP11 2 Transient Receptor Potential Cation Channel, Subfamily P, Member 12 Autosomal Dominant Polycystic Kidney Disease 1 Protein2 3
Export aliases for PKD1 gene to outside databases Previous GC identifers: GC16P016714 GC16M002165 GC16M002078 GC16M002063
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Summariesfor PKD1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for PKD1 : This gene encodes a member of the polycystin protein family. The encoded glycoprotein contains a large N-terminal extracellular region, multiple transmembrane domains and a cytoplasmic C-tail. It is an integral membrane protein that functions as a regulator of calcium permeable cation channels and intracellular calcium homoeostasis. It is also involved in cell-cell/matrix interactions and may modulate G-protein-coupled signal-transduction pathways. It plays a role in renal tubular development, and mutations in this gene cause autosomal dominant polycystic kidney disease type 1 (ADPKD1). ADPKD1 is characterized by the growth of fluid-filled cysts that replace normal renal tissue and result in end-stage renal failure. Splice variants encoding different isoforms have been noted for this gene. Also, six pseudogenes, closely linked in a known duplicated region on chromosome 16p, have been described. (provided by RefSeq, Oct 2008) UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161 Function : Involved in renal tubulogenesis. Involved in fluid-flow mechanosensation by the primary cilium in renalepithelium (By similarity). Acts as a regulator of cilium length, together with PKD2 (By similarity). The dynamic control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling (By similarity). May be an ion-channel regulator. Involved in adhesive protein-protein and protein-carbohydrate interactions Gene Wiki entry for PKD1
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Genomic Viewsfor PKD1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010393.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PKD1 gene promoter: CREB AP-1 deltaCREB Other transcription factors Search SABiosciences Chromatin IP Primers for PKD1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PKD1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16p13.3 Ensembl cytogenetic band: 16p13.3 HGNC cytogenetic band: 16p13.3 PKD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M002138: view genomic region
(about GC identifiers )
Start:
2,138,711 bp from pter
End:
2,185,899 bp from pter
Size:
47,189 bases
Orientation:
minus strand
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Proteinsfor PKD1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161 (See
protein sequence )Recommended Name: Polycystin-1 precursor Size : 4303 amino acids; 462529 Da
Subunit : Interacts with PKD2. Interacts with PRKX; involved in differentiation and controlled morphogenesis of thekidney. Interacts with NPHP1 (via SH3 domain)
Subcellular location : Membrane; Multi-pass membrane protein. Cell projection, cilium (By similarity). Note=PKD1localization to the plasma and ciliary membranes requires PKD2, is independent of PKD2 channel activity, and involves stimulation of PKD1 autoproteolytic cleavage at the GPS domain
Caution : Variant Cys-2379 has been originally described as a benign polymorphism (PubMed:10854095). However, it is alikely pathogenic mutation (PubMed:PubMed:22508176)
1 PDB 3D structure from and Proteopedia for PKD1 :1B4R (3D)
 
Secondary accessions : Q15140 Q15141Alternative splicing : 3 isoforms : P98161-1 P98161-2 P98161-3 Explore the universe of human proteins at neXtProt for PKD1: NX_P98161 Post-translational modifications:
After synthesis, undergoes cleavage between Leu-3048 and Thr-3049 in the GPS domain. Cleavage at the GPS domain occurs through a cis-autoproteolytic mechanism involving an ester-intermediate via N-O acyl rearrangement. This process takes place in the early secretory pathway, depends on initial N-glycosylation, and requires the REJ domain. There is evidence that cleavage at GPS domain is incomplete. Uncleaved and cleaved products may have different functions in vivo1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P98161 PKD1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (2 alternative transcripts):
NP_000287.3 NP_001009944.2 ENSEMBL proteins: ENSP00000262304 ENSP00000399501 ENSP00000461391 ENSP00000457132 ENSP00000455753 ENSP00000457984 ENSP00000455382 ENSP00000457162 ENSP00000456670 ENSP00000456672 Human Recombinant Protein Products for PKD1: Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9 ): About this table
PKD1 for ontologies About GeneDecksing PKD1 Antibody Products: Assay Products for PKD1:
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Protein
Domains / Familiesfor PKD1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
PKD1 for domains About GeneDecksing 5/19 InterPro domains/families (see all 19 ):
Graphical View of Domain Structure for InterPro Entry P98161 ProtoNet protein and cluster: P98161
5/8 Blocks protein families (see all 8 ): IPB000372 Cysteine-rich flanking region IPB000434 Polycystic kidney disease type 1 protein (PKD1) signature IPB000483 Cysteine-rich flanking region IPB000601 PKD IPB001052 Rubredoxin UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161 Domain : The LDL-receptor class A domain is atypical; the potential calcium-binding site is missingSimilarity : Belongs to the polycystin familySimilarity : Contains 1 C-type lectin domainSimilarity : Contains 1 GPS domainSimilarity : Contains 1 LDL-receptor class A domainSimilarity : Contains 2 LRR (leucine-rich) repeatsSimilarity : Contains 1 LRRCT domainSimilarity : Contains 1 LRRNT domainSimilarity : Contains 17 PKD domainsSimilarity : Contains 1 PLAT domainSimilarity : Contains 1 REJ domainSimilarity : Contains 1 WSC domain
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Functionfor PKD1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: PKD1_HUMAN, P98161 Function : Involved in renal tubulogenesis. Involved in fluid-flow mechanosensation by the primary cilium in renalepithelium (By similarity). Acts as a regulator of cilium length, together with PKD2 (By similarity). The dynamic control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling (By similarity). May be an ion-channel regulator. Involved in adhesive protein-protein and protein-carbohydrate interactions
Genatlas biochemistry entry for PKD1 : polycystin 1,integral membrane protein with a duplicated portion,involved in cell/matrix interactions,expressed by epithelial renal tubular cells in fetal,ductal epithelia of the liver,pancreas,lung,breast,reproductive organs,modulating WNT signaling during renal development,binding and activating heteromeric G-proteins in vitro,required for the structural integrity of blood vessels,homolog to C elegans lov-1,involved in regulating ion transport Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6 ): About this table
PKD1 for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for PKD1 : 15/21 MGI mutant phenotypes (inferred from 26 alleles ) (MGI details for Pkd1) (see all 21 ):
PKD1 for phenotypes About GeneDecksing Animal Models: Mouse knock-outs for PKD1: Pkd1 tm2.1Ggg Pkd1 tm1Jzh Pkd1 tm1Maa Pkd1 tm1.2Djmp Pkd1 tm2.2Bol Pkd1 tm1.2Bol Pkd1 tm1Shh Pkd1 tm2.1Som Pkd1 tm3.2Bol Pkd1 tm2Jzh Pkd1 tm3.1Jzh Pkd1 tm1Ggg Pkd1 tm1Som Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PKD1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PKD1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PKD1 (NM_000296 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PKD1 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PKD1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PKD1
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Pathways & Interactionsfor PKD1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Calcium channels
Pathway sources See GeneCards unified pathways Show all pathways 1 EMD Millipore Pathway for PKD1
PKD1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PKD1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/35 Interacting proteins for PKD1 (P98161 2 , 3 ENSP00000262304 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 35 )About this table Gene Ontology (GO): 5/37 biological process terms (GO ID links to tree view) (see all 37 ): About this table
PKD1 for ontologies About GeneDecksing
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Drugs & Compoundsfor PKD1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
PKD1 for compounds About GeneDecksing Browse Tocris compounds for PKD1 1 HMDB Compound for PKD1 About this table 10/22 Novoseek chemical compound relationships for PKD1 gene (see all 22 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
trp-p-2
75.2
5
18273441 (1), 19879844 (1), 15971078 (1), 19556541 (1) (see all 5 )
penicillin
47.5
23
12051565 (4), 12196546 (1), 12845845 (1), 8769609 (1) (see all 12 )
threonine
43.2
9
17077180 (1), 19173301 (1), 19243594 (1), 19258390 (1) (see all 8 )
beta-lactam
39.7
3
16303769 (1), 14691653 (1), 2230238 (1)
calcium
33.6
23
18285569 (3), 9326320 (1), 9192675 (1), 18422703 (1) (see all 13 )
serine
30.8
13
17077180 (1), 19173301 (1), 15695390 (1), 19243594 (1) (see all 12 )
vidarabine
24.3
1
9773786 (1)
rapamycin
22.8
1
18845692 (1)
pkcs
19.9
3
12689594 (2), 15590638 (1)
pneumococcal
13.3
1
20194703 (1)
Search CenterWatch for drugs/clinical trials and news about PKD1
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Transcriptsfor PKD1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for PKD1 gene (2 alternative transcripts): NM_000296.3 NM_001009944.2 Unigene Cluster for PKD1:
Polycystic kidney disease 1 (autosomal dominant) Hs.75813 [show with all ESTs ] Unigene Representative Sequence: NM_001009944 18/41 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 41 ): ENST00000262304 (uc002cos.1 ) ENST00000423118 (uc010bse.1 uc002cot.1 )ENST00000472577 ENST00000564313 ENST00000561668 ENST00000487932 ENST00000485120 ENST00000562425 ENST00000567355 ENST00000472659 ENST00000568796 ENST00000570253 ENST00000562297 ENST00000567946 ENST00000486339 ENST00000415938 ENST00000483731 ENST00000565639 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PKD1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PKD1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): PKD1 (NM_000296 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PKD1 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PKD1
Additional cDNA sequence: AB209025.1 AB209675.1 AK309422.1 L33243.1 U24497.1
21 DOTS entries : DT.70104277 DT.87077312
DT.91644432 DT.86858932 DT.97760273 DT.100059201 DT.120674876 DT.100892089 DT.120674921 DT.120674969 DT.120674995 DT.120675018 DT.91864894 DT.95283226 DT.100892088 DT.100892094 DT.120705612 DT.120705686 DT.91718243 DT.91733091 DT.92360713 24/33 AceView cDNA sequences (see all 33 ):
NM_000296 AI140269 BF847876 CR613181 CR590016 L33243 AI660209 CD608089 AA831732 BI825250 U24497 AW192878 CD608091 AI199962 AI188663 AI192483 BF928319 CD608085 BF058936 CD608087 AW090455 AL134818 BF058046 BF081888 GeneLoc Exon Structure 5/26 Alternative Splicing Database (ASD) splice patterns (SP) for PKD1 (see all 26 ) About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17 ^ 18a · 18b ^ 19a · 19b · 19c · SP1 :                                                     SP2 :                                                     SP3 :                                                     SP4 :                                                     SP5 :                                                    
ExUns: 19d ^ 20a · 20b ^ 21a · 21b ^ 22 ^ 23 ^ 24a · 24b ^ 25 ^ 26 ^ 27 ^ 28a · 28b ^ 29a · 29b ^ 30a · 30b · 30c · 30d ^ 31a · 31b ^ 32a · 32b ^ 33a · 33b ^ SP1 :                                                     SP2 :                                                     SP3 :                                                     SP4 :                                           -     -       SP5 :                                           -     -      
ExUns: 34a · 34b · 34c ^ 35a · 35b · 35c · 35d ^ 36a · 36b ^ 37 ^ 38 ^ 39a · 39b · 39c ^ 40a · 40b ^ 41 SP1 :                                   SP2 :                                   SP3 :                                   SP4 :                                   SP5 :                                  
ECgene alternative splicing isoforms for PKD1
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Expression for PKD1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PKD1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GCCGCTTCTAAbout this image PKD1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See PKD1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PKD1 SOURCE GeneReport for Unigene cluster: Hs.75813 SABiosciences Expression via Pathway-Focused PCR Arrays including PKD1 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PKD1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat PKD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PKD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PKD1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PKD1
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Orthologsfor PKD1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for PKD1 gene from 3/17 species (see all 17 ) About this table
ENSEMBL Gene Tree for PKD1 (if available)TreeFam Gene Tree for PKD1 (if available)
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Paralogsfor PKD1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PKD1 gene PKD2 2 NPIPP1 2 PKDREJ 2 PKD2L2 2 PKD2L1 2 PKD1L1 2 2 SIMAP similar genes for PKD1 using alignment to 14 protein entries: PKD1_HUMAN (see all proteins ):NPIP NPIPP1
PKD1 for paralogs About GeneDecksing 5/8 Pseudogenes.org Pseudogenes for PKD1 (see all 8 )PGOHUM00000248733 PGOHUM00000262927 PGOHUM00000259017 PGOHUM00000248747 PGOHUM00000248991
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Genomic Variantsfor PKD1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
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Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for PKD1 (2138711 - 2185899 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 14 variations for PKD1 14 CNVs : 72421 72422 77159 77160 72423 5329 87939 87938 32073 30000 35365 30734 87937 66915 Human Gene Mutation Database (HGMD) : PKD1 Locus Specific Mutation Databases (LSDB): PKD1 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PKD1
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Disorders
/ Diseasesfor PKD1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
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PKD1 for disorders About GeneDecksing OMIM gene information: 601313 OMIM disorders : 173900 UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161
Defects in PKD1 are the cause of polycystic kidney disease 1 (PKD1) [MIM:173900]. PKD1 is characterized by progressive formation and enlargement of cysts in both kidneys, typically leading to end-stage renal disease in adult life. Cysts also occurs in the liver and other organs. Its prevalence is estimated at about 1/1000 20/50 diseases for PKD1 (see all 50 ): About MalaCards polycystic kidney disease kidney disease polycystic kidney disease 1, autosomal dominant von hippel-lindau disease polycystic kidney disease, adult type i polycystic kidney disease, autosomal dominant end stage renal failure acrofacial dysostosis autosomal dominant disease connective tissue disease haemophilus influenzae intracranial aneurysm polycystic kidney disease 2 marfan syndrome polycystic liver disease cystic kidney otitis media tuberous sclerosis dysostosis cerebral aneurysms 5 diseases from the University of Copenhagen DISEASES database for PKD1 :Polycystic kidney disease Cystic kidney Kidney failure Polycystic liver disease Genetic disorder 10/34 Novoseek disease relationships for PKD1 gene (see all 34 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
adpkd
98.3
503
12007219 (5), 11773467 (4), 10729710 (4), 12220456 (4) (see all 99 )
polycystic kidney diseases
95.5
112
17102641 (2), 8666666 (2), 17715262 (2), 8661056 (2) (see all 90 )
renal cyst
89.5
29
19194729 (4), 2215575 (2), 1605247 (1), 1583643 (1) (see all 20 )
polycystic kidney type 2 autosomal dominant disease
87.4
1
10023895 (1)
arpkd
85.3
13
11981261 (2), 10200981 (1), 15674734 (1), 12647363 (1) (see all 9 )
polycystic kidney type 1 autosomal dominant disease
83.8
1
10364515 (1)
cystic kidney disease
83
10
16207829 (2), 9631851 (1), 16536277 (1), 10362797 (1) (see all 7 )
cysts
79.8
89
10504485 (4), 11689485 (3), 19346236 (3), 10835625 (2) (see all 56 )
polycystic liver disease
75.7
4
16294159 (1), 19766642 (1)
tuberous sclerosis
70.9
23
9382094 (2), 18598780 (1), 11812941 (1), 17373211 (1) (see all 17 )
GeneTests: PKD1 Polycystic Kidney Disease, Autosomal Dominant Genetic Association Database (GAD): PKD1 Human Genome Epidemiology (HuGE) Navigator: PKD1 (14 documents) Export disorders for PKD1 gene to outside databases
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Publicationsfor PKD1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PKD1 gene, integrated from 9 sources (see all 511 ): (articles sorted by number of sources associating them with PKD1) Utopia : connect your pdf to the dynamic world of online information
Three novel mutations of the PKD1 gene in Korean patients with autosomal dominant polycystic kidney disease. (PubMed id 12220456) 1 , 2 , 4, 9 Eo H.-S....Kim U.K. (2002) Thirteen novel mutations of the replicated region of PKD1 in an Asian population. (PubMed id 11012875) 1 , 2 , 9 Phakdeekitcharoen B....Germino G.G. (2000) Identification of mutations in the duplicated region of the polycystic kidney disease 1 gene (PKD1) by a novel approach. (PubMed id 9199561) 1 , 2 , 9 Peral B.... Harris P.C. (1997) Protein kinase X (PRKX) can rescue the effects of polycystic kidney disease-1 gene (PKD1) deficiency. (PubMed id 17980165) 1 , 2 , 9 Li X....Wilson P.D. (2008) Novel mutations of the PKD1 gene in Korean patients with autosomal dominant polycystic kidney disease. (PubMed id 10729710) 1 , 2 , 9 Kim U.K.... Lee C.C. (2000) Mutational analysis within the 3' region of the PKD1 gene. (PubMed id 10200984) 1 , 2 , 9 Badenas C.... Darnell A. (1999) An unusual pattern of mutation in the duplicated portion of PKD1 is revealed by use of a novel strategy for mutation detection. (PubMed id 9285784) 1 , 2 , 9 Watnick T.J.... Germino G.G. (1997) Polycystic kidney disease: the complete structure of the PKD1 gene and its protein. (PubMed id 7736581) 1 , 2 , 9 Gluecksmann-Kuis M.A.... Frischauf A.-M. (1995) Novel PKD1 deletions and missense variants in a cohort of Hellenic polycystic kidney disease families. (PubMed id 11571556) 1 , 2 , 9 Bouba I.... Deltas C.C. (2001) The structure of a PKD domain from polycystin-1: implications for polycystic kidney disease. (PubMed id 9889186) 1 , 2 , 9 Bycroft M.... Chothia C. (1999)
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External Searches for PKD1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PKD1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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(According to HUGE )
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Specialized Databases showing PKD1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for PKD1 Pharmacogenomics, SNPs, Pathways ATLAS Chromosomes in Cancer entry for PKD1 Genetics and Cytogenetics in Oncology and Haematology GeneReviews http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PKD1 Functional Glycomics Gateway - Glycan Binding http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_204
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About This Section Patent Information for PKD1 gene: Search GeneIP for patents involving PKD1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PKD1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for PKD1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for PKD1 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for PKD1 OriGene 3'-UTR Clone for PKD1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for PKD1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for PKD1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for PKD1 OriGene Custom Protein Services for PKD1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PKD1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing PKD1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat PKD1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat PKD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat PKD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat PKD1
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PKD1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PKD1
ThermoFisher Antibodies for PKD1
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PKD1
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