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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

PKD1 Gene

protein-coding   GIFtS: 65
GCID: GC16M002138

polycystic kidney disease 1 (autosomal dominant)

 Explore 50 diseases affiliated with
PKD1 via our new
 Human Malady Compendium 
Biological research products
for PKD1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Polycystic Kidney Disease 1 (Autosomal Dominant)1 2     Polycystic Kidney Disease-Associated Protein2
PBP1 2     Polycystin 12
Pc-11 2     Polycystin-11
TRPP11 2     Transient Receptor Potential Cation Channel, Subfamily P, Member 12
Autosomal Dominant Polycystic Kidney Disease 1 Protein2 3     

External Ids:    HGNC: 90081   Entrez Gene: 53102   Ensembl: ENSG000000087107   OMIM: 6013135   UniProtKB: P981613   

Export aliases for PKD1 gene to outside databases

Previous GC identifers: GC16P016714 GC16M002165 GC16M002078 GC16M002063


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for PKD1:
This gene encodes a member of the polycystin protein family. The encoded glycoprotein contains a large N-terminal
extracellular region, multiple transmembrane domains and a cytoplasmic C-tail. It is an integral membrane protein that
functions as a regulator of calcium permeable cation channels and intracellular calcium homoeostasis. It is also
involved in cell-cell/matrix interactions and may modulate G-protein-coupled signal-transduction pathways. It plays a
role in renal tubular development, and mutations in this gene cause autosomal dominant polycystic kidney disease type
1 (ADPKD1). ADPKD1 is characterized by the growth of fluid-filled cysts that replace normal renal tissue and result in
end-stage renal failure. Splice variants encoding different isoforms have been noted for this gene. Also, six
pseudogenes, closely linked in a known duplicated region on chromosome 16p, have been described. (provided by RefSeq,
Oct 2008)

UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161
Function: Involved in renal tubulogenesis. Involved in fluid-flow mechanosensation by the primary cilium in renal
epithelium (By similarity). Acts as a regulator of cilium length, together with PKD2 (By similarity). The dynamic
control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response
creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases
intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling (By similarity). May be an
ion-channel regulator. Involved in adhesive protein-protein and protein-carbohydrate interactions

Gene Wiki entry for PKD1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010393.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the PKD1 gene promoter:
         CREB   AP-1   deltaCREB   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): PKD1 promoter sequence
   Search SABiosciences Chromatin IP Primers for PKD1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PKD1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p13.3   Ensembl cytogenetic band:  16p13.3   HGNC cytogenetic band: 16p13.3

PKD1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PKD1 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M002138:  view genomic region     (about GC identifiers)

Start:
2,138,711 bp from pter      End:
2,185,899 bp from pter
Size:
47,189 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161 (See protein sequence)
Recommended Name: Polycystin-1 precursor  
Size: 4303 amino acids; 462529 Da
Subunit: Interacts with PKD2. Interacts with PRKX; involved in differentiation and controlled morphogenesis of the
kidney. Interacts with NPHP1 (via SH3 domain)
Subcellular location: Membrane; Multi-pass membrane protein. Cell projection, cilium (By similarity). Note=PKD1
localization to the plasma and ciliary membranes requires PKD2, is independent of PKD2 channel activity, and involves
stimulation of PKD1 autoproteolytic cleavage at the GPS domain
Caution: Variant Cys-2379 has been originally described as a benign polymorphism (PubMed:10854095). However, it is a
likely pathogenic mutation (PubMed:PubMed:22508176)
1 PDB 3D structure from and Proteopedia for PKD1:
1B4R (3D)    
Secondary accessions: Q15140 Q15141
Alternative splicing: 3 isoforms:  P98161-1   P98161-2   P98161-3   

Explore the universe of human proteins at neXtProt for PKD1: NX_P98161

Post-translational modifications:

  • After synthesis, undergoes cleavage between Leu-3048 and Thr-3049 in the GPS domain. Cleavage at the GPS domain occurs
  • through a cis-autoproteolytic mechanism involving an ester-intermediate via N-O acyl rearrangement. This process takes
    place in the early secretory pathway, depends on initial N-glycosylation, and requires the REJ domain. There is
    evidence that cleavage at GPS domain is incomplete. Uncleaved and cleaved products may have different functions in
    vivo1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P98161

  • PKD1 Protein expression data from MOPED and PaxDb:    About this image 
    PKD1 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_000287.3  NP_001009944.2  

    ENSEMBL proteins: 
     ENSP00000262304   ENSP00000399501   ENSP00000461391   ENSP00000457132   ENSP00000455753  
     ENSP00000457984   ENSP00000455382   ENSP00000457162   ENSP00000456670   ENSP00000456672  

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    Uscn Proteins for PKD1

    Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002133polycystin complex ISS--
    GO:0005634nucleus ISS--
    GO:0005737cytoplasm ISS--
    GO:0005886plasma membrane ----
    GO:0005887integral to plasma membrane TAS7663510

    PKD1 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    PKD1 for domains           About GeneDecksing

    5/19 InterPro domains/families (see all 19):
     IPR002859 PKD/REJ-like
     IPR000483 Cys-rich_flank_reg_C
     IPR000601 PKD_dom
     IPR001611 Leu-rich_rpt
     IPR002889 WSC_carb-bd

    Graphical View of Domain Structure for InterPro Entry P98161

    ProtoNet protein and cluster: P98161

    5/8 Blocks protein families (see all 8):
    IPB000372 Cysteine-rich flanking region
    IPB000434 Polycystic kidney disease type 1 protein (PKD1) signature
    IPB000483 Cysteine-rich flanking region
    IPB000601 PKD
    IPB001052 Rubredoxin


    UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161
    Domain: The LDL-receptor class A domain is atypical; the potential calcium-binding site is missing
    Similarity: Belongs to the polycystin family
    Similarity: Contains 1 C-type lectin domain
    Similarity: Contains 1 GPS domain
    Similarity: Contains 1 LDL-receptor class A domain
    Similarity: Contains 2 LRR (leucine-rich) repeats
    Similarity: Contains 1 LRRCT domain
    Similarity: Contains 1 LRRNT domain
    Similarity: Contains 17 PKD domains
    Similarity: Contains 1 PLAT domain
    Similarity: Contains 1 REJ domain
    Similarity: Contains 1 WSC domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: PKD1_HUMAN, P98161
    Function: Involved in renal tubulogenesis. Involved in fluid-flow mechanosensation by the primary cilium in renal
    epithelium (By similarity). Acts as a regulator of cilium length, together with PKD2 (By similarity). The dynamic
    control of cilium length is essential in the regulation of mechanotransductive signaling. The cilium length response
    creates a negative feedback loop whereby fluid shear-mediated deflection of the primary cilium, which decreases
    intracellular cAMP, leads to cilium shortening and thus decreases flow-induced signaling (By similarity). May be an
    ion-channel regulator. Involved in adhesive protein-protein and protein-carbohydrate interactions

         Genatlas biochemistry entry for PKD1:
    polycystin 1,integral membrane protein with a duplicated portion,involved in cell/matrix interactions,expressed by
    epithelial renal tubular cells in fetal,ductal epithelia of the liver,pancreas,lung,breast,reproductive
    organs,modulating WNT signaling during renal development,binding and activating heteromeric G-proteins in
    vitro,required for the structural integrity of blood vessels,homolog to C elegans lov-1,involved in regulating ion
    transport

         Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005261cation channel activity ISS--
    GO:0005515protein binding IPI--
    GO:0019901protein kinase binding IPI17980165
    GO:0019904protein domain specific binding IPI9171830
    GO:0030246carbohydrate binding IEA--
         
    PKD1 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for PKD1:
     Decreased focal adhesion (FA)  

         15/21 MGI mutant phenotypes (inferred from 26 alleles(MGI details for Pkd1) (see all 21):
     cardiovascular system  cellular  craniofacial  digestive/alimentary  embryogenesis 
     endocrine/exocrine gland  growth/size  hematopoietic system  homeostasis/metabolism  immune system 
     integument  limbs/digits/tail  liver/biliary system  mortality/aging  muscle 

    PKD1 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-outs for PKD1: Pkd1tm2.1Ggg Pkd1tm1Jzh Pkd1tm1Maa Pkd1tm1.2Djmp Pkd1tm2.2Bol Pkd1tm1.2Bol
                                                   Pkd1tm1Shh Pkd1tm2.1Som Pkd1tm3.2Bol Pkd1tm2Jzh Pkd1tm3.1Jzh Pkd1tm1Ggg Pkd1tm1Som
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for PKD1 

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Calcium channels
    Calcium channels1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for PKD1
        Calcium channels




    PKD1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PKD1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/35 Interacting proteins for PKD1 (P981612, 3 ENSP000002623044) via UniProtKB, MINT, STRING, and/or I2D (see all 35)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NPHP1O152592, 3, ENSP000003131694MINT-8109642 MINT-8109661 I2D: score=1 STRING: ENSP00000313169
    ABL1P005192, 3, ENSP000003614234MINT-8110647 I2D: score=3 STRING: ENSP00000361423
    FYNP062412, 3, ENSP000003576564MINT-8111439 I2D: score=3 STRING: ENSP00000357656
    ATF7IPQ6VMQ62, 3MINT-61896 I2D: score=3 
    PKD2Q135632, 3, ENSP000002375964MINT-7895347 MINT-7895311 MINT-7895557 MINT-7895283 MINT-7895327 MINT-7895498 MINT-7895375 I2D: score=7 STRING: ENSP00000237596
    About this table

    Gene Ontology (GO): 5/37 biological process terms (GO ID links to tree view) (see all 37):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001502cartilage condensation ----
    GO:0001568blood vessel development ----
    GO:0001701in utero embryonic development ISS--
    GO:0001822kidney development ISS--
    GO:0001892embryonic placenta development ISS--

    PKD1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    PKD1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for PKD1

    1 HMDB Compound for PKD1    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    10/22 Novoseek chemical compound relationships for PKD1 gene (see all 22)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    trp-p-2 75.2 5 18273441 (1), 19879844 (1), 15971078 (1), 19556541 (1) (see all 5)
    penicillin 47.5 23 12051565 (4), 12196546 (1), 12845845 (1), 8769609 (1) (see all 12)
    threonine 43.2 9 17077180 (1), 19173301 (1), 19243594 (1), 19258390 (1) (see all 8)
    beta-lactam 39.7 3 16303769 (1), 14691653 (1), 2230238 (1)
    calcium 33.6 23 18285569 (3), 9326320 (1), 9192675 (1), 18422703 (1) (see all 13)
    serine 30.8 13 17077180 (1), 19173301 (1), 15695390 (1), 19243594 (1) (see all 12)
    vidarabine 24.3 1 9773786 (1)
    rapamycin 22.8 1 18845692 (1)
    pkcs 19.9 3 12689594 (2), 15590638 (1)
    pneumococcal 13.3 1 20194703 (1)

    Search CenterWatch for drugs/clinical trials and news about PKD1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    About This Section

    REFSEQ mRNAs for PKD1 gene (2 alternative transcripts): 
    NM_000296.3  NM_001009944.2  

    Unigene Cluster for PKD1:

    Polycystic kidney disease 1 (autosomal dominant)
    Hs.75813  [show with all ESTs]
    Unigene Representative Sequence: NM_001009944
    18/41 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 41):
    ENST00000262304(uc002cos.1) ENST00000423118(uc010bse.1 uc002cot.1)
    ENST00000472577 ENST00000564313 ENST00000561668 ENST00000487932 ENST00000485120
    ENST00000562425 ENST00000567355 ENST00000472659 ENST00000568796 ENST00000570253
    ENST00000562297 ENST00000567946 ENST00000486339 ENST00000415938 ENST00000483731
    ENST00000565639

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    Additional cDNA sequence: 

    AB209025.1 AB209675.1 AK309422.1 L33243.1 U24497.1 

    21 DOTS entries:

    DT.70104277  DT.87077312  DT.91644432  DT.86858932  DT.97760273  DT.100059201  DT.120674876  DT.100892089 
    DT.120674921  DT.120674969  DT.120674995  DT.120675018  DT.91864894  DT.95283226  DT.100892088  DT.100892094 
    DT.120705612  DT.120705686  DT.91718243  DT.91733091  DT.92360713 

    24/33 AceView cDNA sequences (see all 33):

    NM_000296 AI140269 BF847876 CR613181 CR590016 L33243 AI660209 CD608089 
    AA831732 BI825250 U24497 AW192878 CD608091 AI199962 AI188663 AI192483 
    BF928319 CD608085 BF058936 CD608087 AW090455 AL134818 BF058046 BF081888 

    GeneLoc Exon Structure

    5/26 Alternative Splicing Database (ASD) splice patterns (SP) for PKD1 (see all 26)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17 ^ 18a · 18b ^ 19a · 19b · 19c ·
    SP1:                                                                                                                                                            
    SP2:                                                                                                                                                            
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 19d ^ 20a · 20b ^ 21a · 21b ^ 22 ^ 23 ^ 24a · 24b ^ 25 ^ 26 ^ 27 ^ 28a · 28b ^ 29a · 29b ^ 30a · 30b · 30c · 30d ^ 31a · 31b ^ 32a · 32b ^ 33a · 33b ^
    SP1:                                                                                                                                                            
    SP2:                                                                                                                                                            
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                -           -               
    SP5:                                                                                                                                -           -               

    ExUns: 34a · 34b · 34c ^ 35a · 35b · 35c · 35d ^ 36a · 36b ^ 37 ^ 38 ^ 39a · 39b · 39c ^ 40a · 40b ^ 41
    SP1:                                                                                                      
    SP2:                                                                                                      
    SP3:                                                                                                      
    SP4:                                                                                                      
    SP5:                                                                                                      


    ECgene alternative splicing isoforms for PKD1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    PKD1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GCCGCTTCTA
    PKD1 Expression
    About this image

    PKD1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    3 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    CartilageSynchondrosesChondrocytesBone, Cartilage
    CartilageSynchondrosesPrechondrocytesBone, Cartilage
    Head MesenchymeBranchial Arch 1Osteochondro Mesenchymal CellsBone, Cartilage
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See PKD1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for PKD1

    SOURCE GeneReport for Unigene cluster: Hs.75813
        SABiosciences Expression via Pathway-Focused PCR Arrays including PKD1: 
              Cell Cycle in human mouse rat
              Primary Cilia in human mouse rat

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PKD1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for PKD1 gene from 3/17 species (see all 17)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves PKD11 polycystic kidney disease 1 (autosomal dominant) 61.53(n)
    56.45(a)
      416553  XM_414854.3  XP_414854.3 
    lizard
    (Anolis carolinensis)
    Reptilia PKD16
    --
    39(a)
    1 ↔ 1
    GL344103.1(17270-87505)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1001495621 polycystin-1-like 51.5(n)
    42.1(a)
      100149562  XM_003197739.1  XP_003197787.1 


    ENSEMBL Gene Tree for PKD1 (if available)
    TreeFam Gene Tree for PKD1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for PKD1 gene
    PKD22  NPIPP12  PKDREJ2  PKD2L22  PKD2L12  PKD1L12  
    2 SIMAP similar genes for PKD1 using alignment to 14 protein entries:     PKD1_HUMAN (see all proteins):
    NPIP    NPIPP1

    PKD1 for paralogs           About GeneDecksing


    5/8 Pseudogenes.org Pseudogenes for PKD1 (see all 8)
    PGOHUM00000248733 PGOHUM00000262927 PGOHUM00000259017 PGOHUM00000248747 PGOHUM00000248991


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1509 NCBI SNPs in PKD1 are shown (see all 1509    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1994760951,2
    Cpathogenic2139958(-) TTGACC/TGACTC 5 R * stg1 ds50010--------
    rs1994761021,2
    Cpathogenic2140310(-) CTCTGA/GATGGG 5 * W stg1 us2k10--------
    rs1994760971,2
    Cpathogenic2140469(-) CTGTGA/TGTGGG 5 * C stg1 us2k10--------
    rs1994760941,2
    Cpathogenic2140689(-) ACGCCC/TAGCTG 5 Q * us2k1 stg10--------
    rs1994760961,2
    Cpathogenic2141807(-) TCCTGC/TAGCTG 5 Q * us2k1 stg10--------
    rs1994760981,2
    Cpathogenic2141862(-) GGCTAA/CGTGCA 5 * Y us2k1 stg10--------
    rs1994761011,2
    Cpathogenic2159404(-) GCCTGC/TAGGTC 4 Q * stg10--------
    rs1994761001,2
    Cpathogenic2164490(-) AGCCTC/TGGTGC 4 S L mis10--------
    rs1994760991,2
    Cpathogenic2168022(-) GCATCG/TCTATG 4 R L mis10--------
    rs454989001,2
    C,Funtested3184622(+) CTGACA/C/TCCAGT 6 -- ut311NA 120

    HapMap Linkage Disequilibrium report for PKD1 (2138711 - 2185899 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 14 variations for PKD1
         14 CNVs: 72421 72422 77159 77160 72423 5329 87939 87938 32073 30000 35365 30734 87937 66915
    Human Gene Mutation Database (HGMD): PKD1

    Locus Specific Mutation Databases (LSDB): PKD1

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PKD1
    DNA2.0 Custom Variant and Variant Library Synthesis for PKD1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    PKD1 for disorders           About GeneDecksing

    OMIM gene information: 601313   
    OMIM disorders: 173900  
    UniProtKB/Swiss-Prot: PKD1_HUMAN, P98161
  • Defects in PKD1 are the cause of polycystic kidney disease 1 (PKD1) [MIM:173900]. PKD1 is characterized by
  • progressive formation and enlargement of cysts in both kidneys, typically leading to end-stage renal disease in adult
    life. Cysts also occurs in the liver and other organs. Its prevalence is estimated at about 1/1000

    20/50 diseases for PKD1 (see all 50):    About MalaCards
    polycystic kidney disease    kidney disease    polycystic kidney disease 1, autosomal dominant    von hippel-lindau disease
    polycystic kidney disease, adult type i    polycystic kidney disease, autosomal dominant    end stage renal failure    acrofacial dysostosis
    autosomal dominant disease    connective tissue disease    haemophilus influenzae    intracranial aneurysm
    polycystic kidney disease 2    marfan syndrome    polycystic liver disease    cystic kidney
    otitis media    tuberous sclerosis    dysostosis    cerebral aneurysms

    5 diseases from the University of Copenhagen DISEASES database for PKD1:
    Polycystic kidney disease     Cystic kidney     Kidney failure     Polycystic liver disease
    Genetic disorder

    10/34 Novoseek disease relationships for PKD1 gene (see all 34)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    adpkd 98.3 503 12007219 (5), 11773467 (4), 10729710 (4), 12220456 (4) (see all 99)
    polycystic kidney diseases 95.5 112 17102641 (2), 8666666 (2), 17715262 (2), 8661056 (2) (see all 90)
    renal cyst 89.5 29 19194729 (4), 2215575 (2), 1605247 (1), 1583643 (1) (see all 20)
    polycystic kidney type 2 autosomal dominant disease 87.4 1 10023895 (1)
    arpkd 85.3 13 11981261 (2), 10200981 (1), 15674734 (1), 12647363 (1) (see all 9)
    polycystic kidney type 1 autosomal dominant disease 83.8 1 10364515 (1)
    cystic kidney disease 83 10 16207829 (2), 9631851 (1), 16536277 (1), 10362797 (1) (see all 7)
    cysts 79.8 89 10504485 (4), 11689485 (3), 19346236 (3), 10835625 (2) (see all 56)
    polycystic liver disease 75.7 4 16294159 (1), 19766642 (1)
    tuberous sclerosis 70.9 23 9382094 (2), 18598780 (1), 11812941 (1), 17373211 (1) (see all 17)

    GeneTests: PKD1
    Polycystic Kidney Disease, Autosomal Dominant

    Genetic Association Database (GAD): PKD1
    Human Genome Epidemiology (HuGE) Navigator: PKD1 (14 documents)

    Export disorders for PKD1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for PKD1 gene, integrated from 9 sources (see all 511):
    (articles sorted by number of sources associating them with PKD1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Three novel mutations of the PKD1 gene in Korean patients with autosomal dominant polycystic kidney disease. (PubMed id 12220456)1, 2, 4, 9 Eo H.-S....Kim U.K. (2002)
    2. Thirteen novel mutations of the replicated region of PKD1 in an Asian population. (PubMed id 11012875)1, 2, 9 Phakdeekitcharoen B....Germino G.G. (2000)
    3. Identification of mutations in the duplicated region of the polycystic kidney disease 1 gene (PKD1) by a novel approach. (PubMed id 9199561)1, 2, 9 Peral B.... Harris P.C. (1997)
    4. Protein kinase X (PRKX) can rescue the effects of polycystic kidney disease-1 gene (PKD1) deficiency. (PubMed id 17980165)1, 2, 9 Li X....Wilson P.D. (2008)
    5. Novel mutations of the PKD1 gene in Korean patients with autosomal dominant polycystic kidney disease. (PubMed id 10729710)1, 2, 9 Kim U.K.... Lee C.C. (2000)
    6. Mutational analysis within the 3' region of the PKD1 gene. (PubMed id 10200984)1, 2, 9 Badenas C.... Darnell A. (1999)
    7. An unusual pattern of mutation in the duplicated portion of PKD1 is revealed by use of a novel strategy for mutation detection. (PubMed id 9285784)1, 2, 9 Watnick T.J.... Germino G.G. (1997)
    8. Polycystic kidney disease: the complete structure of the PKD1 gene and its protein. (PubMed id 7736581)1, 2, 9 Gluecksmann-Kuis M.A.... Frischauf A.-M. (1995)
    9. Novel PKD1 deletions and missense variants in a cohort of Hellenic polycystic kidney disease families. (PubMed id 11571556)1, 2, 9 Bouba I.... Deltas C.C. (2001)
    10. The structure of a PKD domain from polycystin-1: implications for polycystic kidney disease. (PubMed id 9889186)1, 2, 9 Bycroft M.... Chothia C. (1999)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5310 HGNC: 9008 AceView: PKD1 Ensembl:ENSG00000008710 euGenes: HUgn5310
    ECgene: PKD1 H-InvDB: PKD1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for PKD1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for PKD1 Genetics and Cytogenetics in Oncology and Haematology
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PKD1
    Functional Glycomics Gateway - Glycan Bindinghttp://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_204

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for PKD1 gene:
    Search GeneIP for patents involving PKD1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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