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Aliases for PITPNM3 Gene

Aliases for PITPNM3 Gene

  • PITPNM Family Member 3 2 3 5
  • Phosphatidylinositol Transfer Protein, Membrane-Associated 3 3 4
  • Atypical Chemokine Receptor 6 2 3
  • Cone Rod Dystrophy 5 2 3
  • PITPnm 3 3 4
  • NIR-1 3 4
  • NIR1 3 4
  • PYK2 N-Terminal Domain-Interacting Receptor 1 3
  • Pyk2 N-Terminal Domain-Interacting Receptor 1 4
  • Retinal Degeneration B Alpha 3 3
  • RDGBA3 3
  • CORD5 3
  • ACKR6 3

External Ids for PITPNM3 Gene

Previous HGNC Symbols for PITPNM3 Gene

  • CORD5

Previous GeneCards Identifiers for PITPNM3 Gene

  • GC17M006303
  • GC17M006559
  • GC17M006299
  • GC17M006356
  • GC17M006357
  • GC17M006358
  • GC17M006360
  • GC17M006361

Summaries for PITPNM3 Gene

Entrez Gene Summary for PITPNM3 Gene

  • This gene encodes a member of a family of membrane-associated phosphatidylinositol transfer domain-containing proteins. The calcium-binding protein has phosphatidylinositol (PI) transfer activity and interacts with the protein tyrosine kinase PTK2B (also known as PYK2). The protein is homologous to a Drosophila protein that is implicated in the visual transduction pathway in flies. Mutations in this gene result in autosomal dominant cone dystrophy. Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Sep 2009]

GeneCards Summary for PITPNM3 Gene

PITPNM3 (PITPNM Family Member 3) is a Protein Coding gene. Diseases associated with PITPNM3 include cone-rod dystrophy 5 and retinitis pigmentosa. GO annotations related to this gene include calcium ion binding and receptor tyrosine kinase binding. An important paralog of this gene is PITPNM2.

UniProtKB/Swiss-Prot for PITPNM3 Gene

  • Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes (in vitro) (By similarity). Binds calcium ions.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PITPNM3 Gene

Genomics for PITPNM3 Gene

Regulatory Elements for PITPNM3 Gene

Promoters for PITPNM3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PITPNM3 on UCSC Golden Path with GeneCards custom track

Genomic Location for PITPNM3 Gene

Chromosome:
17
Start:
6,450,344 bp from pter
End:
6,556,557 bp from pter
Size:
106,214 bases
Orientation:
Minus strand

Genomic View for PITPNM3 Gene

Genes around PITPNM3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PITPNM3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PITPNM3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PITPNM3 Gene

Proteins for PITPNM3 Gene

  • Protein details for PITPNM3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZ71-PITM3_HUMAN
    Recommended name:
    Membrane-associated phosphatidylinositol transfer protein 3
    Protein Accession:
    Q9BZ71
    Secondary Accessions:
    • A1A5D0
    • F8WEW5
    • Q59GH9
    • Q9NPQ4

    Protein attributes for PITPNM3 Gene

    Size:
    974 amino acids
    Molecular mass:
    106781 Da
    Quaternary structure:
    • Interacts with PTK2B via its C-terminus.
    SequenceCaution:
    • Sequence=BAD92367.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for PITPNM3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PITPNM3 Gene

Proteomics data for PITPNM3 Gene at MOPED

Post-translational modifications for PITPNM3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PITPNM3 Gene

Antibody Products

No data available for DME Specific Peptides for PITPNM3 Gene

Domains & Families for PITPNM3 Gene

Protein Domains for PITPNM3 Gene

Suggested Antigen Peptide Sequences for PITPNM3 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BZ71

UniProtKB/Swiss-Prot:

PITM3_HUMAN :
  • Contains 1 DDHD domain.
  • Belongs to the PtdIns transfer protein family. PI transfer class IIA subfamily.
Domain:
  • Contains 1 DDHD domain.
Family:
  • Belongs to the PtdIns transfer protein family. PI transfer class IIA subfamily.
genes like me logo Genes that share domains with PITPNM3: view

Function for PITPNM3 Gene

Molecular function for PITPNM3 Gene

UniProtKB/Swiss-Prot Function:
Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes (in vitro) (By similarity). Binds calcium ions.

Gene Ontology (GO) - Molecular Function for PITPNM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA,IPI 21481794
GO:0008526 phosphatidylinositol transporter activity TAS 10022914
genes like me logo Genes that share ontologies with PITPNM3: view
genes like me logo Genes that share phenotypes with PITPNM3: view

Human Phenotype Ontology for PITPNM3 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

miRNA for PITPNM3 Gene

miRTarBase miRNAs that target PITPNM3

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for PITPNM3 Gene

Localization for PITPNM3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PITPNM3 Gene

Endomembrane system; Peripheral membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PITPNM3 Gene COMPARTMENTS Subcellular localization image for PITPNM3 gene
Compartment Confidence
nucleus 3
cytosol 2
cytoskeleton 1
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for PITPNM3 Gene

Pathways & Interactions for PITPNM3 Gene

SuperPathways for PITPNM3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PITPNM3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PITPNM3 Gene

Drugs & Compounds for PITPNM3 Gene

(1) Drugs for PITPNM3 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0

(382) Additional Compounds for PITPNM3 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
PC(18:1(9Z)e/2:0)
  • (2-acetyloxy-3-octadec-9-enoxypropyl) 2-trimethylazaniumylethyl phosphate
  • 2-Acetyl-1-(9Z-octadecenyl)-sn-glycero-3-phosphocholine
  • PC(O-18:1(9Z)/2:0)
Phosphatidylcholines Group A
  • (R)-4-hydroxy-N,N,N-trimethyl-10-oxo-7-[(1-oxohexadecyl)oxy]-3,5,9-Trioxa-4-phosphapentacosan-1-aminium 4-oxide hydroxide inner salt
  • (R)-4-hydroxy-N,N,N-trimethyl-10-oxo-7-[(1-oxohexadecyl)oxy]-3,5,9-Trioxa-4-phosphapentacosan-1-aminium 4-oxide inner salt
  • 1,2-Bis(hexadecanoyl)-sn-glycero-3-phosphocholine
  • 1,2-Bis(palmitoyl)-sn-glycero-3-phosphocholine
  • 1,2-Dihexadecanoyl-sn-glycerol-3-phosphorylcholine
63-89-8, 68737-67-7
Phosphatidylcholines Group B
  • 1-(1-Enyl-palmitoyl)-2-stearidonoyl-sn-glycero-3-phosphocholine
  • GPCho(16:0/18:4)
  • GPCho(16:0/18:4n3)
  • GPCho(16:0/18:4w3)
  • GPCho(34:4)
88542-95-4
Phosphatidylinositol-3,4,5-trisphosphate
  • 1,2-Diacyl-sn-glycero-3-phospho-(1'-myo-inositol-3',4',5'-bisphosphate)
  • 1-Phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate
  • Phosphatidylinositol-3,4,5-trisphosphate
PI(16:0/16:0)
  • 1,2-Dihexadecanoyl-rac-glycero-3-phospho-(1'-myo-inositol)
  • 1,2-Dipalmitoyl-rac-glycero-3-phosphoinositol
  • Phosphatidylinositol(16:0/16:0)
  • Phosphatidylinositol(32:0)
  • PI(16:0/16:0)
genes like me logo Genes that share compounds with PITPNM3: view

Transcripts for PITPNM3 Gene

Unigene Clusters for PITPNM3 Gene

PITPNM family member 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PITPNM3 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b
SP1: -
SP2:
SP3: - -
SP4: -

Relevant External Links for PITPNM3 Gene

GeneLoc Exon Structure for
PITPNM3
ECgene alternative splicing isoforms for
PITPNM3

Expression for PITPNM3 Gene

mRNA expression in normal human tissues for PITPNM3 Gene

Protein differential expression in normal tissues from HIPED for PITPNM3 Gene

This gene is overexpressed in Spleen (31.2) and Fetal Brain (26.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PITPNM3 Gene



SOURCE GeneReport for Unigene cluster for PITPNM3 Gene Hs.183983

mRNA Expression by UniProt/SwissProt for PITPNM3 Gene

Q9BZ71-PITM3_HUMAN
Tissue specificity: Detected in brain and spleen, and at low levels in ovary.
genes like me logo Genes that share expression patterns with PITPNM3: view

Protein tissue co-expression partners for PITPNM3 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for PITPNM3 Gene

Orthologs for PITPNM3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PITPNM3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PITPNM3 36
  • 100 (a)
OneToOne
PITPNM3 35
  • 98.26 (n)
  • 98.33 (a)
cow
(Bos Taurus)
Mammalia PITPNM3 36
  • 94 (a)
OneToOne
PITPNM3 35
  • 90.12 (n)
  • 94.15 (a)
dog
(Canis familiaris)
Mammalia PITPNM3 35
  • 89.17 (n)
  • 92.39 (a)
PITPNM3 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pitpnm3 36
  • 94 (a)
OneToOne
Pitpnm3 35
  • 89.59 (n)
  • 94.57 (a)
Pitpnm3 16
oppossum
(Monodelphis domestica)
Mammalia PITPNM3 36
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 49 (a)
OneToMany
-- 36
  • 88 (a)
OneToMany
-- 36
  • 77 (a)
OneToMany
-- 36
  • 76 (a)
OneToMany
-- 36
  • 81 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Pitpnm3 35
  • 89.9 (n)
  • 94.88 (a)
chicken
(Gallus gallus)
Aves PITPNM3 35
  • 70.73 (n)
  • 77.08 (a)
PITPNM3 36
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia pitpnm3 35
  • 69.71 (n)
  • 73.96 (a)
zebrafish
(Danio rerio)
Actinopterygii pitpnm3 36
  • 65 (a)
OneToMany
PITPNM3 (1 of 2) 36
  • 66 (a)
OneToMany
plrdgb 35
wu:fb08f09 35
  • 65.46 (n)
  • 68.72 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 29 (a)
OneToOne
Species with no ortholog for PITPNM3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PITPNM3 Gene

ENSEMBL:
Gene Tree for PITPNM3 (if available)
TreeFam:
Gene Tree for PITPNM3 (if available)

Paralogs for PITPNM3 Gene

Paralogs for PITPNM3 Gene

(3) SIMAP similar genes for PITPNM3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PITPNM3: view

Variants for PITPNM3 Gene

Sequence variations from dbSNP and Humsavar for PITPNM3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs3809835 - 6,503,563(-) GGACC(A/G)CGCCG reference, missense
rs76024428 Cone-rod dystrophy 5 (CORD5) 6,468,237(-) ACTCA(C/G)GTCAA reference, missense
rs28493751 - 6,538,056(+) CCAGG(A/G)GGCAC reference, missense
rs165098 -- 6,556,515(-) gggcg(C/G)gggcg upstream-variant-2KB, utr-variant-5-prime
rs165099 -- 6,554,245(-) CCTCC(C/T)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PITPNM3 Gene

Variant ID Type Subtype PubMed ID
nsv519881 CNV Loss 19592680
nsv524539 CNV Loss 19592680
esv2539012 CNV Deletion 19546169
esv2715587 CNV Deletion 23290073
esv1197663 CNV Deletion 17803354
nsv526449 CNV Loss 19592680

Variation tolerance for PITPNM3 Gene

Residual Variation Intolerance Score: 5.52% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.97; 74.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PITPNM3 Gene

HapMap Linkage Disequilibrium report
PITPNM3
Human Gene Mutation Database (HGMD)
PITPNM3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PITPNM3 Gene

Disorders for PITPNM3 Gene

MalaCards: The human disease database

(8) MalaCards diseases for PITPNM3 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
cone-rod dystrophy 5
  • cord5
retinitis pigmentosa
  • retinitis pigmentosa 1
retinitis pigmentosa 66
  • rp66
immunodeficiency 13
  • icl
cone-rod dystrophy
  • cone-rod dystrophy 5
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

PITM3_HUMAN
  • Cone-rod dystrophy 5 (CORD5) [MIM:600977]: An inherited retinal dystrophy characterized by retinal pigment deposits visible on fundus examination, predominantly in the macular region, and initial loss of cone photoreceptors followed by rod degeneration. This leads to decreased visual acuity and sensitivity in the central visual field, followed by loss of peripheral vision. Severe loss of vision occurs earlier than in retinitis pigmentosa. {ECO:0000269 PubMed:17377520}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for PITPNM3

Genetic Association Database (GAD)
PITPNM3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PITPNM3
genes like me logo Genes that share disorders with PITPNM3: view

No data available for Genatlas for PITPNM3 Gene

Publications for PITPNM3 Gene

  1. Identification of a novel family of targets of PYK2 related to Drosophila retinal degeneration B (rdgB) protein. (PMID: 10022914) Lev S. … Schlessinger J. (Mol. Cell. Biol. 1999) 2 3 4 23 67
  2. Ocular phenotype of CORD5, an autosomal dominant retinal dystrophy associated with PITPNM3 p.Q626H mutation. (PMID: 22405330) Reinis A. … Sandgren O. (Acta Ophthalmol 2013) 3
  3. Nir1 promotes invasion of breast cancer cells by binding to chemokine (C-C motif) ligand 18 through the PI3K/Akt/GSK3I^/Snail signalling pathway. (PMID: 24001613) Zhang B. … Qi Y. (Eur. J. Cancer 2013) 3
  4. CCL18 from tumor-associated macrophages promotes breast cancer metastasis via PITPNM3. (PMID: 21481794) Chen J. … Song E. (Cancer Cell 2011) 3
  5. PITPNM3 is an uncommon cause of cone and cone-rod dystrophies. (PMID: 20590364) KAPhn L. … Golovleva I. (Ophthalmic Genet. 2010) 3

Products for PITPNM3 Gene

Sources for PITPNM3 Gene

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