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Aliases for PIR56040 Gene

Subcategory (RNA class) for PIR56040 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR56040 Gene

No Aliases found

ORGUL Members for PIR56040 Gene

Previous GeneCards Identifiers for PIR56040 Gene

  • GC19P010912

No data available for External Ids for PIR56040 Gene

Summaries for PIR56040 Gene

GeneCards Summary for PIR56040 Gene

PIR56040 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR56040 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR56040 Gene

Genomics for PIR56040 Gene

Regulatory Elements for PIR56040 Gene

Enhancers for PIR56040 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G010805 1.1 Ensembl ENCODE dbSUPER 0.7 +3.4 3433 1.3 CTCF CEBPB SIN3A KLF17 ZIC2 GLIS1 SCRT2 FOS SLC44A2 PIR56040 MIR199A1
GH19G010796 1.1 ENCODE dbSUPER 0.7 -4.2 -4172 4.1 PKNOX1 PTBP1 CBX3 TBL1XR1 NFXL1 GLI4 ZNF121 RELB IKZF2 CREM SLC44A2 SMARCA4 AP1M2 PIR56040 GC19P010786
GH19G010808 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.2 12183 11.6 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 EIF3G TIMM29 FBXL12 CARM1 RAVER1 C19orf38 CDC37 YIPF2 ZNF440 ZNF627
GH19G010789 0.5 ENCODE 0.4 -12.5 -12461 1.2 BCOR ZNF121 HLF KLF4 SLC44A2 GC19P010786 PIR56040
GH19G010792 0.4 dbSUPER 0.4 -8.6 -8630 1.4 ZNF121 SLC44A2 SMARCA4 GC19P010786 PIR56040
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR56040 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR56040 Gene

Chromosome:
19
Start:
10,802,306 bp from pter
End:
10,802,334 bp from pter
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR56040 Gene

Genes around PIR56040 on UCSC Golden Path with GeneCards custom track

PIR56040 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR56040 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR56040 Gene

Proteins for PIR56040 Gene

Post-translational modifications for PIR56040 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR56040 Gene

Domains & Families for PIR56040 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR56040 Gene

Function for PIR56040 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR56040 Gene

Localization for PIR56040 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIR56040 Gene

Pathways & Interactions for PIR56040 Gene

SuperPathways for PIR56040 Gene

No Data Available

Interacting Proteins for PIR56040 Gene

Gene Ontology (GO) - Biological Process for PIR56040 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR56040 Gene

Drugs & Compounds for PIR56040 Gene

No Compound Related Data Available

Transcripts for PIR56040 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR56040 Gene

No ASD Table

Relevant External Links for PIR56040 Gene

GeneLoc Exon Structure for
PIR56040

No data available for mRNA/cDNA for PIR56040 Gene

Expression for PIR56040 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR56040 Gene

Orthologs for PIR56040 Gene

No data available for Orthologs and Evolution for PIR56040 Gene

Paralogs for PIR56040 Gene

No data available for Paralogs for PIR56040 Gene

Variants for PIR56040 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR56040 Gene

Disorders for PIR56040 Gene

No disorders were found for PIR56040 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR56040 Gene

Publications for PIR56040 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for PIR56040 Gene

Sources for PIR56040 Gene

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