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Aliases for PIR55478 Gene

Subcategory (RNA class) for PIR55478 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR55478 Gene

No Aliases found

ORGUL Members for PIR55478 Gene

Previous GeneCards Identifiers for PIR55478 Gene

  • GC06P036887
  • GC06P037066
  • GC06P037088
  • GC06P037800
  • GC06P038422
  • GC06P039012
  • GC06P039600

No data available for External Ids for PIR55478 Gene

Summaries for PIR55478 Gene

GeneCards Summary for PIR55478 Gene

PIR55478 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR55478 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR55478

Additional gene information for PIR55478 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR55478 Gene

Genomics for PIR55478 Gene

Regulatory Elements for PIR55478 Gene

Enhancers for PIR55478 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H036911 1.3 Ensembl ENCODE dbSUPER 0.4 -6.4 -6425 3 ELF3 CTCF SAP130 BATF RAD21 ZFHX2 CTBP1 GATA3 POLR2A HNF4G C6orf89 PPIL1 PIR55478 GC06P041442 GC06P041223 PIR40408
GH06H036916 0.6 ENCODE dbSUPER 0.7 -1.9 -1853 2 RAD21 C6orf89 PPIL1 GC06P041442 PIR55478 GC06P041223 PIR40408
GH06H036926 1 Ensembl ENCODE 0.4 +9.0 8997 3 BATF ZIC2 FOXK2 POLR2A EGR1 EED ZNF600 PRDM10 RUNX3 STAT1 PPIL1 C6orf89 MAPK13 GC06P041442 PIR55478 GC06P040328
GH06H036906 0.9 ENCODE dbSUPER 0.4 -12.1 -12145 1 FOXA2 MAX RAD21 GABPA YY1 JUND ATF3 ZNF366 HNF4A ZNF24 C6orf89 PPIL1 FGD2 RAB44 CPNE5 GC06P041223 PIR40408 GC06P041442 PIR55478
GH06H036920 0.5 ENCODE 0.7 +0.6 617 0 JUND FOSL2 FOS GC06P041442 PIR55478 GC06P040328
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR55478 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR55478 Gene

Chromosome:
6
Start:
36,919,643 bp from pter
End:
36,919,673 bp from pter
Size:
31 bases
Orientation:
Plus strand

Genomic View for PIR55478 Gene

Genes around PIR55478 on UCSC Golden Path with GeneCards custom track

PIR55478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR55478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR55478 Gene

ORGUL Member Location for PIR55478 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR55478 Gene

Proteins for PIR55478 Gene

Post-translational modifications for PIR55478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR55478 Gene

Domains & Families for PIR55478 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR55478 Gene

Function for PIR55478 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR55478 Gene

Localization for PIR55478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR55478 Gene

Pathways & Interactions for PIR55478 Gene

SuperPathways for PIR55478 Gene

No Data Available

Interacting Proteins for PIR55478 Gene

Gene Ontology (GO) - Biological Process for PIR55478 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR55478 Gene

Drugs & Compounds for PIR55478 Gene

No Compound Related Data Available

Transcripts for PIR55478 Gene

fRNAdb Secondary structures for PIR55478 Gene

  • FR085746

Alternative Splicing Database (ASD) splice patterns (SP) for PIR55478 Gene

No ASD Table

Relevant External Links for PIR55478 Gene

GeneLoc Exon Structure for
PIR55478

No data available for mRNA/cDNA for PIR55478 Gene

Expression for PIR55478 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR55478 Gene

Orthologs for PIR55478 Gene

No data available for Orthologs and Evolution for PIR55478 Gene

Paralogs for PIR55478 Gene

No data available for Paralogs for PIR55478 Gene

Variants for PIR55478 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR55478 Gene

Disorders for PIR55478 Gene

No disorders were found for PIR55478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR55478 Gene

Publications for PIR55478 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR55478 Gene

Sources for PIR55478 Gene

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