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Aliases for PIR55404 Gene

Subcategory (RNA class) for PIR55404 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR55404 Gene

No Aliases found

ORGUL Members for PIR55404 Gene

Previous GeneCards Identifiers for PIR55404 Gene

  • GC20M003910

No data available for External Ids for PIR55404 Gene

Summaries for PIR55404 Gene

GeneCards Summary for PIR55404 Gene

PIR55404 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR55404 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR55404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR55404 Gene

Genomics for PIR55404 Gene

Regulatory Elements for PIR55404 Gene

Enhancers for PIR55404 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H003925 1.2 Ensembl ENCODE 0.7 +2.5 2541 3 MLX ZFP64 ARID4B ZNF2 ZSCAN9 RARA ZNF366 SCRT2 PAF1 ZNF362 ENSG00000229539 PANK2 CDC25B CENPB RNF24 MAVS ENSG00000275582 PIR55404
GH20H003929 1.1 Ensembl ENCODE 0.7 -0.9 -926 2 HDAC1 TBL1XR1 TCF12 GATA2 PAF1 CEBPB USF2 REST ZNF592 NFIC ENSG00000229539 RNF24 CENPB PANK2 CDC25B MAVS PIR37079 PIR55404
GH20H003928 0.6 FANTOM5 0.7 +0.6 639 0 SCRT1 POLR2A BCL11A PANK2 ENSG00000229539 CDC25B CENPB RNF24 PIR55404 ENSG00000275582
GH20H003923 0.8 Ensembl ENCODE 0.4 +5.2 5245 1 HIC1 ZFHX2 NFIC POLR2A KLF17 FOS EGR2 ENSG00000229539 PANK2 AP5S1 CDC25B CENPB ENSG00000275582 PIR55404
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR55404 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR55404 Gene

Chromosome:
20
Start:
3,929,597 bp from pter
End:
3,929,625 bp from pter
Size:
29 bases
Orientation:
Minus strand

Genomic View for PIR55404 Gene

Genes around PIR55404 on UCSC Golden Path with GeneCards custom track

PIR55404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR55404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR55404 Gene

Proteins for PIR55404 Gene

Post-translational modifications for PIR55404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR55404 Gene

Domains & Families for PIR55404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR55404 Gene

Function for PIR55404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR55404 Gene

Localization for PIR55404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR55404 Gene

Pathways & Interactions for PIR55404 Gene

SuperPathways for PIR55404 Gene

No Data Available

Interacting Proteins for PIR55404 Gene

Gene Ontology (GO) - Biological Process for PIR55404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR55404 Gene

Drugs & Compounds for PIR55404 Gene

No Compound Related Data Available

Transcripts for PIR55404 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR55404 Gene

No ASD Table

Relevant External Links for PIR55404 Gene

GeneLoc Exon Structure for
PIR55404

No data available for mRNA/cDNA for PIR55404 Gene

Expression for PIR55404 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR55404 Gene

Orthologs for PIR55404 Gene

No data available for Orthologs and Evolution for PIR55404 Gene

Paralogs for PIR55404 Gene

No data available for Paralogs for PIR55404 Gene

Variants for PIR55404 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR55404 Gene

Disorders for PIR55404 Gene

No disorders were found for PIR55404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR55404 Gene

Publications for PIR55404 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR55404 Gene

Sources for PIR55404 Gene

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