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Aliases for PIR54187 Gene

Subcategory (RNA class) for PIR54187 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR54187 Gene

No Aliases found

ORGUL Members for PIR54187 Gene

No data available for External Ids for PIR54187 Gene

Summaries for PIR54187 Gene

GeneCards Summary for PIR54187 Gene

PIR54187 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR54187 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR54187 Gene

Genomics for PIR54187 Gene

Regulatory Elements for PIR54187 Gene

Enhancers for PIR54187 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G028034 0.7 ENCODE 0.7 -5.0 -4998 0.2 ELF3 FOXA2 CHD4 TEAD3 CTBP1 GATA3 FOS TCF7L2 GATAD2A TEAD1 ENSG00000253308 EVX1 EVX1-AS PIR54187 LOC105375208
GH07G028018 1 Ensembl ENCODE 0.4 +10.1 10087 2.2 GTF2F1 CTCF ESRRA RB1 WRNIP1 MAX ZNF2 RAD21 RFX5 ZBTB48 ENSG00000253508 HOXA13 HOTTIP HOXA11 HOXA10 HOXA11-AS HOXA9 PIR54187 PIR39851
GH07G028017 0.5 ENCODE 0.4 +11.8 11829 0.6 ZNF664 JUND JUN FOS HOTTIP HOXA13 ENSG00000253508 HOXA11 HOXA11-AS HOXA10 HOXA9 PIR54187 PIR39851
GH07G027972 0.7 Ensembl ENCODE 0.2 +57.4 57433 0.8 IRF1 ATF2 PIR54187 PIR39851
GH07G027951 0.7 ENCODE 0.2 +77.3 77269 1.6 PKNOX1 CEBPB OVOL3 ZEB2 FEZF1 OSR2 PRDM6 HNF4A ZNF24 PRDM10 TAX1BP1 PIR39851 PIR54187
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR54187 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR54187 Gene

Chromosome:
7
Start:
28,029,813 bp from pter
End:
28,029,839 bp from pter
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR54187 Gene

Genes around PIR54187 on UCSC Golden Path with GeneCards custom track

PIR54187 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR54187 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR54187 Gene

Proteins for PIR54187 Gene

Post-translational modifications for PIR54187 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR54187 Gene

Domains & Families for PIR54187 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR54187 Gene

Function for PIR54187 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR54187 Gene

Localization for PIR54187 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIR54187 Gene

Pathways & Interactions for PIR54187 Gene

SuperPathways for PIR54187 Gene

No Data Available

Interacting Proteins for PIR54187 Gene

Gene Ontology (GO) - Biological Process for PIR54187 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR54187 Gene

Drugs & Compounds for PIR54187 Gene

No Compound Related Data Available

Transcripts for PIR54187 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR54187 Gene

No ASD Table

Relevant External Links for PIR54187 Gene

GeneLoc Exon Structure for
PIR54187

No data available for mRNA/cDNA for PIR54187 Gene

Expression for PIR54187 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR54187 Gene

Orthologs for PIR54187 Gene

No data available for Orthologs and Evolution for PIR54187 Gene

Paralogs for PIR54187 Gene

No data available for Paralogs for PIR54187 Gene

Variants for PIR54187 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR54187 Gene

Disorders for PIR54187 Gene

No disorders were found for PIR54187 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR54187 Gene

Publications for PIR54187 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for PIR54187 Gene

Sources for PIR54187 Gene

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