Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR54029 Gene

Subcategory (RNA class) for PIR54029 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR54029 Gene

No Aliases found

ORGUL Members for PIR54029 Gene

Previous GeneCards Identifiers for PIR54029 Gene

  • GC08M145749
  • GC08M145759
  • GC08M145768
  • GC08M145773
  • GC08M145783
  • GC08M144526
  • GC08M144533
  • GC08M144539
  • GC08M144545
  • GC08M144551
  • GC08M144558

No data available for External Ids for PIR54029 Gene

Summaries for PIR54029 Gene

GeneCards Summary for PIR54029 Gene

PIR54029 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR54029 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR54029

Additional gene information for PIR54029 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR54029 Gene

Genomics for PIR54029 Gene

Regulatory Elements for PIR54029 Gene

Enhancers for PIR54029 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H144521 1.3 ENCODE dbSUPER 0.7 -0.9 -901 2 HDGF ATF1 SIN3A BRCA1 YY1 GLIS2 ELK1 ZNF143 ZNF207 ATF7 PPP1R16A ZNF7 ZNF623 ZNF250 VPS28 ZNF251 ZNF34 CPSF1 C8orf82 LRRC14
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR54029 on UCSC Golden Path with GeneCards custom track

Promoters for PIR54029 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000232263 -828 1001 HDGF ATF1 SIN3A BRCA1 YY1 GLIS2 ELK1 ZNF143 ZNF207 ATF7

Genomic Location for PIR54029 Gene

Chromosome:
8
Start:
144,521,842 bp from pter
End:
144,521,872 bp from pter
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR54029 Gene

Genes around PIR54029 on UCSC Golden Path with GeneCards custom track

PIR54029 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR54029 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR54029 Gene

ORGUL Member Location for PIR54029 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR54029 Gene

Proteins for PIR54029 Gene

Post-translational modifications for PIR54029 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR54029 Gene

Domains & Families for PIR54029 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR54029 Gene

Function for PIR54029 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR54029 Gene

Localization for PIR54029 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR54029 Gene

Pathways & Interactions for PIR54029 Gene

SuperPathways for PIR54029 Gene

No Data Available

Interacting Proteins for PIR54029 Gene

Gene Ontology (GO) - Biological Process for PIR54029 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR54029 Gene

Drugs & Compounds for PIR54029 Gene

No Compound Related Data Available

Transcripts for PIR54029 Gene

fRNAdb Secondary structures for PIR54029 Gene

  • FR122019

Alternative Splicing Database (ASD) splice patterns (SP) for PIR54029 Gene

No ASD Table

Relevant External Links for PIR54029 Gene

GeneLoc Exon Structure for
PIR54029

No data available for mRNA/cDNA for PIR54029 Gene

Expression for PIR54029 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR54029 Gene

Orthologs for PIR54029 Gene

No data available for Orthologs and Evolution for PIR54029 Gene

Paralogs for PIR54029 Gene

No data available for Paralogs for PIR54029 Gene

Variants for PIR54029 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR54029 Gene

Disorders for PIR54029 Gene

No disorders were found for PIR54029 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR54029 Gene

Publications for PIR54029 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR54029 Gene

Sources for PIR54029 Gene

Content
Loading form....