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Aliases for PIR53480 Gene

Subcategory (RNA class) for PIR53480 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR53480 Gene

No Aliases found

ORGUL Members for PIR53480 Gene

Previous GeneCards Identifiers for PIR53480 Gene

  • GC12P011803

No data available for External Ids for PIR53480 Gene

Summaries for PIR53480 Gene

GeneCards Summary for PIR53480 Gene

PIR53480 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR53480 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR53480 Gene

Genomics for PIR53480 Gene

Regulatory Elements for PIR53480 Gene

Enhancers for PIR53480 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G011648 2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.9 2916 11.8 HDGF PKNOX1 FOXA2 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 ETV6 BCL2L14 PIR53480 GC12M011721
GH12G011667 1.3 Ensembl ENCODE dbSUPER 0.4 +17.6 17581 1.4 PKNOX1 NFIB CEBPG ZNF121 ARID3A GATA3 ZNF366 POLR2A EED RELB PIR53480 GC12M011721
GH12G011663 1 Ensembl ENCODE dbSUPER 0.4 +14.4 14407 4.9 GATA3 SMARCA4 ZNF544 POLR2A WRNIP1 PRH2 PIR53480 GC12M011721
GH12G011669 1 ENCODE dbSUPER 0.4 +18.5 18473 0.2 PKNOX1 NFIB ZBTB40 ARID3A ZNF366 POLR2A EED ETV6 RELB MAFK PIR53480 GC12M011721
GH12G011671 1.2 Ensembl ENCODE dbSUPER 0.3 +22.4 22410 3.6 ZSCAN4 MAX RBBP5 CEBPG ZNF316 GATA2 NFE2 MAFK EGR2 MAFG ETV6 PIR53480 GC12M011721
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR53480 on UCSC Golden Path with GeneCards custom track

Promoters for PIR53480 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048791 -449 4401 HDGF FOXA2 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143

Genomic Location for PIR53480 Gene

Chromosome:
12
Start:
11,651,049 bp from pter
End:
11,651,075 bp from pter
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR53480 Gene

Genes around PIR53480 on UCSC Golden Path with GeneCards custom track

PIR53480 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR53480 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR53480 Gene

Proteins for PIR53480 Gene

Post-translational modifications for PIR53480 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR53480 Gene

Domains & Families for PIR53480 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR53480 Gene

Function for PIR53480 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR53480 Gene

Localization for PIR53480 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIR53480 Gene

Pathways & Interactions for PIR53480 Gene

SuperPathways for PIR53480 Gene

No Data Available

Interacting Proteins for PIR53480 Gene

Gene Ontology (GO) - Biological Process for PIR53480 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR53480 Gene

Drugs & Compounds for PIR53480 Gene

No Compound Related Data Available

Transcripts for PIR53480 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR53480 Gene

No ASD Table

Relevant External Links for PIR53480 Gene

GeneLoc Exon Structure for
PIR53480

No data available for mRNA/cDNA for PIR53480 Gene

Expression for PIR53480 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR53480 Gene

Orthologs for PIR53480 Gene

No data available for Orthologs and Evolution for PIR53480 Gene

Paralogs for PIR53480 Gene

No data available for Paralogs for PIR53480 Gene

Variants for PIR53480 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR53480 Gene

Disorders for PIR53480 Gene

No disorders were found for PIR53480 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR53480 Gene

Publications for PIR53480 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for PIR53480 Gene

Sources for PIR53480 Gene

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