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Aliases for PIR52978 Gene

Subcategory (RNA class) for PIR52978 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR52978 Gene

No Aliases found

ORGUL Members for PIR52978 Gene

Previous GeneCards Identifiers for PIR52978 Gene

  • GC10M072915

No data available for External Ids for PIR52978 Gene

Summaries for PIR52978 Gene

GeneCards Summary for PIR52978 Gene

PIR52978 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR52978 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR52978 Gene

Genomics for PIR52978 Gene

Regulatory Elements for PIR52978 Gene

Enhancers for PIR52978 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G071208 1.2 Ensembl ENCODE 0.2 -53.1 -53119 0.9 PKNOX1 ATF1 ZNF2 ZNF48 GLIS2 CBX5 ZNF143 KLF13 ZNF263 SP3 UNC5B PIR52978
GH10G071136 0.4 ENCODE 0.4 +19.8 19819 0.3 ZIC2 UNC5B PIR52978 LOC105378351
GH10G071068 0.8 Ensembl ENCODE 0.2 +87.2 87247 0.4 PRDM6 ZNF398 FOS ZIC2 PRDM1 ZFX LOC105378351 PIR52978
GH10G071176 0.5 ENCODE 0.3 -20.6 -20572 0.2 TEAD4 NFE2 MAFK UNC5B PIR52978
GH10G071106 0.7 FANTOM5 ENCODE 0.2 +50.0 49963 0.2 ZNF512 IKZF1 SPI1 CHST3 PIR52978 LOC105378351
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR52978 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR52978 Gene

Chromosome:
10
Start:
71,156,220 bp from pter
End:
71,156,247 bp from pter
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR52978 Gene

Genes around PIR52978 on UCSC Golden Path with GeneCards custom track

PIR52978 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR52978 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR52978 Gene

Proteins for PIR52978 Gene

Post-translational modifications for PIR52978 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR52978 Gene

Domains & Families for PIR52978 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR52978 Gene

Function for PIR52978 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR52978 Gene

Localization for PIR52978 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIR52978 Gene

Pathways & Interactions for PIR52978 Gene

SuperPathways for PIR52978 Gene

No Data Available

Interacting Proteins for PIR52978 Gene

Gene Ontology (GO) - Biological Process for PIR52978 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR52978 Gene

Drugs & Compounds for PIR52978 Gene

No Compound Related Data Available

Transcripts for PIR52978 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR52978 Gene

No ASD Table

Relevant External Links for PIR52978 Gene

GeneLoc Exon Structure for
PIR52978

No data available for mRNA/cDNA for PIR52978 Gene

Expression for PIR52978 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR52978 Gene

Orthologs for PIR52978 Gene

No data available for Orthologs and Evolution for PIR52978 Gene

Paralogs for PIR52978 Gene

No data available for Paralogs for PIR52978 Gene

Variants for PIR52978 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR52978 Gene

Disorders for PIR52978 Gene

No disorders were found for PIR52978 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR52978 Gene

Publications for PIR52978 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for PIR52978 Gene

Sources for PIR52978 Gene

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