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Aliases for PIR50030 Gene

Subcategory (RNA class) for PIR50030 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR50030 Gene

No Aliases found

ORGUL Members for PIR50030 Gene

Previous GeneCards Identifiers for PIR50030 Gene

  • GC0XM109235
  • GC02M224581

No data available for External Ids for PIR50030 Gene

Summaries for PIR50030 Gene

GeneCards Summary for PIR50030 Gene

PIR50030 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR50030 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR50030 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR50030 Gene

Genomics for PIR50030 Gene

Regulatory Elements for PIR50030 Gene

Enhancers for PIR50030 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H223723 1.2 Ensembl ENCODE 0.4 -10.4 -10406 4 PKNOX1 ATF1 SIN3A BRCA1 ZNF766 ZNF143 ATF7 FOS GTF2B REST WDFY1 KCNE4 PIR50030 AP1S3
GH02H223758 1.2 Ensembl ENCODE 0.3 -44.8 -44799 3 ELF3 PKNOX1 FOXA2 BATF RFX5 ZNF366 FOS ATF7 RUNX3 ZNF362 PIR50030 AP1S3
GH02H223796 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -84.1 -84149 6 PKNOX1 ZSCAN4 RAD21 SLC30A9 ZNF143 ATF7 ETV6 RUNX3 IKZF2 MIXL1 AP1S3 WDFY1 MRPL44 PIR50030
GH02H223735 0.5 ENCODE 0.3 -20.4 -20423 1 JUND POLR2A MAFK AP1S3 PIR50030
GH02H223813 1.5 Ensembl ENCODE dbSUPER 0.1 -100.3 -100322 5 PKNOX1 FEZF1 ZNF2 FOS TSHZ1 ZNF610 GLIS1 WT1 PRDM4 SP7 AP1S3 MRPL44 WDFY1 PIR50030
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR50030 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR50030 Gene

Chromosome:
2
Start:
223,715,453 bp from pter
End:
223,715,483 bp from pter
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR50030 Gene

Genes around PIR50030 on UCSC Golden Path with GeneCards custom track

PIR50030 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR50030 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR50030 Gene

ORGUL Member Location for PIR50030 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR50030 Gene

Proteins for PIR50030 Gene

Post-translational modifications for PIR50030 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR50030 Gene

Domains & Families for PIR50030 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR50030 Gene

Function for PIR50030 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR50030 Gene

Localization for PIR50030 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR50030 Gene

Pathways & Interactions for PIR50030 Gene

SuperPathways for PIR50030 Gene

No Data Available

Interacting Proteins for PIR50030 Gene

Gene Ontology (GO) - Biological Process for PIR50030 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR50030 Gene

Drugs & Compounds for PIR50030 Gene

No Compound Related Data Available

Transcripts for PIR50030 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR50030 Gene

No ASD Table

Relevant External Links for PIR50030 Gene

GeneLoc Exon Structure for
PIR50030

No data available for mRNA/cDNA for PIR50030 Gene

Expression for PIR50030 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR50030 Gene

Orthologs for PIR50030 Gene

No data available for Orthologs and Evolution for PIR50030 Gene

Paralogs for PIR50030 Gene

No data available for Paralogs for PIR50030 Gene

Variants for PIR50030 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR50030 Gene

Disorders for PIR50030 Gene

No disorders were found for PIR50030 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR50030 Gene

Publications for PIR50030 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR50030 Gene

Sources for PIR50030 Gene

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