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Aliases for PIR47942 Gene

Subcategory (RNA class) for PIR47942 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR47942 Gene

No Aliases found

ORGUL Members for PIR47942 Gene

Previous GeneCards Identifiers for PIR47942 Gene

  • GC09M111086

No data available for External Ids for PIR47942 Gene

Summaries for PIR47942 Gene

GeneCards Summary for PIR47942 Gene

PIR47942 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47942 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47942 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47942 Gene

Genomics for PIR47942 Gene

GeneHancer (GH) Regulatory Elements for PIR47942 Gene

Promoters and enhancers for PIR47942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I108323 Enhancer 0.4 ENCODE 550.8 +1.0 1012 1.6 POLR2A FOS PIR47942 LOC105376212 LOC105376214
GH09I108333 Enhancer 0.6 ENCODE 0.4 -9.2 -9209 1 GATAD2A TFE3 FOXA2 PPARG NFIL3 JUND CEBPA HNF4A ZBTB33 MIXL1 PIR47942 GC09M108394 LOC105376214
GH09I108301 Enhancer 0.8 FANTOM5 Ensembl 0.3 +23.6 23590 0.5 MAFG NFE2 MAFK EMSY SPI1 PIR47942 LOC105376212 LOC105376214
GH09I108295 Enhancer 0.7 FANTOM5 Ensembl ENCODE 0.3 +28.1 28097 2.8 POLR2A LOC105376212 PIR47942 LOC105376214
GH09I108322 Enhancer 0.2 ENCODE 0.8 +2.0 2010 0.1 PIR47942 LOC105376212 LOC105376214
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR47942 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47942 Gene

Genomic Locations for PIR47942 Gene
chr9:108,324,613-108,324,639
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr9:111,086,893-111,086,919
(GRCh37/hg19)

Genomic View for PIR47942 Gene

Genes around PIR47942 on UCSC Golden Path with GeneCards custom track

PIR47942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47942 Gene

Proteins for PIR47942 Gene

Post-translational modifications for PIR47942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR47942 Gene

Domains & Families for PIR47942 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR47942 Gene

Function for PIR47942 Gene

Phenotypes From GWAS Catalog for PIR47942 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47942 Gene

Localization for PIR47942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47942 Gene

Pathways & Interactions for PIR47942 Gene

SuperPathways for PIR47942 Gene

No Data Available

Interacting Proteins for PIR47942 Gene

Gene Ontology (GO) - Biological Process for PIR47942 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47942 Gene

Drugs & Compounds for PIR47942 Gene

No Compound Related Data Available

Transcripts for PIR47942 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47942 Gene

No ASD Table

Relevant External Links for PIR47942 Gene

GeneLoc Exon Structure for
PIR47942

No data available for mRNA/cDNA for PIR47942 Gene

Expression for PIR47942 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47942 Gene

Orthologs for PIR47942 Gene

No data available for Orthologs and Evolution for PIR47942 Gene

Paralogs for PIR47942 Gene

No data available for Paralogs for PIR47942 Gene

Variants for PIR47942 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47942 Gene

Disorders for PIR47942 Gene

No disorders were found for PIR47942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47942 Gene

Publications for PIR47942 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47942 Gene

Sources for PIR47942 Gene

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