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Aliases for PIR47909 Gene

Subcategory (RNA class) for PIR47909 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR47909 Gene

No Aliases found

ORGUL Members for PIR47909 Gene

Previous GeneCards Identifiers for PIR47909 Gene

  • GC02P232125
  • GC02P232128
  • GC02P232132
  • GC02P232137
  • GC02P232141
  • GC02P231257
  • GC02P231259
  • GC02P231260
  • GC02P231261
  • GC02P231262

No data available for External Ids for PIR47909 Gene

Summaries for PIR47909 Gene

GeneCards Summary for PIR47909 Gene

PIR47909 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47909 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47909 Gene

Genomics for PIR47909 Gene

Regulatory Elements for PIR47909 Gene

Enhancers for PIR47909 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G231296 1.1 Ensembl ENCODE 0.3 +41.1 41132 0.9 ELF3 HDGF FOXA2 ARID4B RAD21 ZNF143 FOS RELB IKZF2 REST GC02P231324 PIR47909 GC02P231265
GH02G231299 1 Ensembl ENCODE 0.3 +44.0 44023 1.8 CTCF FOXA2 RFX1 MTA2 TBX21 ZNF579 GATA2 EED IKZF1 TARDBP HTR2B SNORA75 SNORD20 SPATA3 SPATA3-AS1 NCL GC02P231324 PIR47909 GC02P231265
GH02G231258 0.4 ENCODE 0.7 +2.9 2926 1.1 TBX3 ARMC9 SNORA75 SNORD20 NCL ENSG00000233538 HTR2B GC02P231265 PIR47909 GC02P231324
GH02G231321 1.1 FANTOM5 Ensembl ENCODE 0.2 +65.7 65663 1.3 FOXA2 L3MBTL2 BHLHE40 MAX IKZF1 EED MYC IKZF2 PTMA GC02P231324 GC02P231265 PIR47909
GH02G231286 0.5 ENCODE 0.3 +32.6 32632 3.8 SCRT1 SCRT2 CREB1 FOS TRIM28 HTR2B PIR47909 GC02P231265 GC02P231324
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR47909 on UCSC Golden Path with GeneCards custom track

Promoters for PIR47909 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000131799 103 400 ZFHX2 CEBPB CEBPG ZBTB33 PRDM1 EGR2

Genomic Location for PIR47909 Gene

Chromosome:
2
Start:
231,256,097 bp from pter
End:
231,256,126 bp from pter
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR47909 Gene

Genes around PIR47909 on UCSC Golden Path with GeneCards custom track

PIR47909 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47909 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47909 Gene

Proteins for PIR47909 Gene

Post-translational modifications for PIR47909 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR47909 Gene

Domains & Families for PIR47909 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR47909 Gene

Function for PIR47909 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47909 Gene

Localization for PIR47909 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIR47909 Gene

Pathways & Interactions for PIR47909 Gene

SuperPathways for PIR47909 Gene

No Data Available

Interacting Proteins for PIR47909 Gene

Gene Ontology (GO) - Biological Process for PIR47909 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47909 Gene

Drugs & Compounds for PIR47909 Gene

No Compound Related Data Available

Transcripts for PIR47909 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47909 Gene

No ASD Table

Relevant External Links for PIR47909 Gene

GeneLoc Exon Structure for
PIR47909

No data available for mRNA/cDNA for PIR47909 Gene

Expression for PIR47909 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47909 Gene

Orthologs for PIR47909 Gene

No data available for Orthologs and Evolution for PIR47909 Gene

Paralogs for PIR47909 Gene

No data available for Paralogs for PIR47909 Gene

Variants for PIR47909 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR47909 Gene

Disorders for PIR47909 Gene

No disorders were found for PIR47909 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47909 Gene

Publications for PIR47909 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for PIR47909 Gene

Sources for PIR47909 Gene

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