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Aliases for PIR47140 Gene

Subcategory (RNA class) for PIR47140 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR47140 Gene

No Aliases found

ORGUL Members for PIR47140 Gene

Previous GeneCards Identifiers for PIR47140 Gene

  • GC19P010836

No data available for External Ids for PIR47140 Gene

Summaries for PIR47140 Gene

GeneCards Summary for PIR47140 Gene

PIR47140 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47140 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47140 Gene

Genomics for PIR47140 Gene

Regulatory Elements for PIR47140 Gene

Enhancers for PIR47140 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G010725 1.2 dbSUPER 0.7 +0.2 189 0.7 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZNF627 LOC100419831 ILF3-AS1 RAVER1 QTRT1 SLC44A2 TIMM29 FBXL12 CDC37 YIPF2
GH19G010726 1.2 ENCODE dbSUPER 0.7 +1.3 1264 1.1 CREB3L1 ZNF121 ELK1 ZNF592 SMARCA4 KDM1A LEF1 ZNF777 ZNF175 BACH1 ILF3-AS1 QTRT1 ZNF627 LOC100419831 SMARCA4 SLC44A2 PIR47140 MIR4748
GH19G010724 1.2 ENCODE dbSUPER 0.7 -0.7 -665 0.8 HDGF PKNOX1 AGO1 ZFP64 SIN3A DMAP1 GLIS2 CBX5 KLF13 KDM4B SLC44A2 TIMM29 FBXL12 RAVER1 CDC37 YIPF2 CARM1 ILF3-AS1 ZNF627 EIF3G
GH19G010727 1.1 Ensembl dbSUPER 0.7 +2.4 2385 1.0 HDAC1 CBX3 ZNF644 RELA GATA2 EGR1 ELK1 POLR2A ZNF639 SMARCE1 SLC44A2 ILF3 CDKN2D KRI1 PIR47140 MIR4748
GH19G010729 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.9 5911 4.1 HDGF CTCF FOXA2 PKNOX1 MAX ZIC2 POLR2A ADNP NR2F6 ZSCAN29 SLC44A2 CDKN2D KRI1 ILF3 ILF3-AS1 S1PR5 SMARCA4 DNM2 ICAM3 TYK2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR47140 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR47140 Gene

Chromosome:
19
Start:
10,725,516 bp from pter
End:
10,725,545 bp from pter
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR47140 Gene

Genes around PIR47140 on UCSC Golden Path with GeneCards custom track

PIR47140 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47140 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47140 Gene

Proteins for PIR47140 Gene

Post-translational modifications for PIR47140 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR47140 Gene

Domains & Families for PIR47140 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR47140 Gene

Function for PIR47140 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47140 Gene

Localization for PIR47140 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIR47140 Gene

Pathways & Interactions for PIR47140 Gene

SuperPathways for PIR47140 Gene

No Data Available

Interacting Proteins for PIR47140 Gene

Gene Ontology (GO) - Biological Process for PIR47140 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47140 Gene

Drugs & Compounds for PIR47140 Gene

No Compound Related Data Available

Transcripts for PIR47140 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47140 Gene

No ASD Table

Relevant External Links for PIR47140 Gene

GeneLoc Exon Structure for
PIR47140

No data available for mRNA/cDNA for PIR47140 Gene

Expression for PIR47140 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47140 Gene

Orthologs for PIR47140 Gene

No data available for Orthologs and Evolution for PIR47140 Gene

Paralogs for PIR47140 Gene

No data available for Paralogs for PIR47140 Gene

Variants for PIR47140 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR47140 Gene

Disorders for PIR47140 Gene

No disorders were found for PIR47140 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47140 Gene

Publications for PIR47140 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for PIR47140 Gene

Sources for PIR47140 Gene

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