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Aliases for PIR45971 Gene

Subcategory (RNA class) for PIR45971 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR45971 Gene

No Aliases found

ORGUL Members for PIR45971 Gene

Previous GeneCards Identifiers for PIR45971 Gene

  • GC12P012047

No data available for External Ids for PIR45971 Gene

Summaries for PIR45971 Gene

GeneCards Summary for PIR45971 Gene

PIR45971 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45971 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45971 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45971 Gene

Genomics for PIR45971 Gene

Regulatory Elements for PIR45971 Gene

Enhancers for PIR45971 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H011883 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -9.0 -8961 3 ELF3 PKNOX1 FOXA2 RARA YY1 ELK1 FOS CREM REST PPARG BCL2L14 ETV6 PIR45971 GC12M011920
GH12H011875 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.5 -16549 5 PKNOX1 HLF JUNB MNT JUND IKZF1 SCRT2 ATF7 FOS RUNX3 ETV6 BCL2L14 PIR45971 GC12M011920
GH12H011894 0.8 ENCODE dbSUPER 0.7 +0.6 638 1 POLR2A CBFB EED NR2F1 JUNB RUNX3 BATF PIR45971 GC12P012010
GH12H011890 0.8 ENCODE dbSUPER 0.7 -2.6 -2565 1 CTCF SMC3 MAX ZNF384 MYC RAD21 NR2F2 PIR45971 GC12M011920
GH12H011895 0.8 Ensembl dbSUPER 0.7 +1.6 1626 0 ZFHX2 POLR2A NR2F1 EGR2 PIR45971 GC12P012010
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR45971 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR45971 Gene

Chromosome:
12
Start:
11,894,275 bp from pter
End:
11,894,302 bp from pter
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR45971 Gene

Genes around PIR45971 on UCSC Golden Path with GeneCards custom track

PIR45971 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45971 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45971 Gene

Proteins for PIR45971 Gene

Post-translational modifications for PIR45971 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR45971 Gene

Domains & Families for PIR45971 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR45971 Gene

Function for PIR45971 Gene

Phenotypes From GWAS Catalog for PIR45971 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45971 Gene

Localization for PIR45971 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45971 Gene

Pathways & Interactions for PIR45971 Gene

SuperPathways for PIR45971 Gene

No Data Available

Interacting Proteins for PIR45971 Gene

Gene Ontology (GO) - Biological Process for PIR45971 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45971 Gene

Drugs & Compounds for PIR45971 Gene

No Compound Related Data Available

Transcripts for PIR45971 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45971 Gene

No ASD Table

Relevant External Links for PIR45971 Gene

GeneLoc Exon Structure for
PIR45971

No data available for mRNA/cDNA for PIR45971 Gene

Expression for PIR45971 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45971 Gene

Orthologs for PIR45971 Gene

No data available for Orthologs and Evolution for PIR45971 Gene

Paralogs for PIR45971 Gene

No data available for Paralogs for PIR45971 Gene

Variants for PIR45971 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR45971 Gene

Disorders for PIR45971 Gene

No disorders were found for PIR45971 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45971 Gene

Publications for PIR45971 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45971 Gene

Sources for PIR45971 Gene

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