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Aliases for PIR42556 Gene

Subcategory (RNA class) for PIR42556 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR42556 Gene

No Aliases found

ORGUL Members for PIR42556 Gene

Previous GeneCards Identifiers for PIR42556 Gene

  • GC12P105100

No data available for External Ids for PIR42556 Gene

Summaries for PIR42556 Gene

GeneCards Summary for PIR42556 Gene

PIR42556 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42556 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42556 Gene

Genomics for PIR42556 Gene

Regulatory Elements for PIR42556 Gene

Enhancers for PIR42556 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G104718 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.2 14232 5.0 PKNOX1 ZSCAN4 WRNIP1 BMI1 NFXL1 FEZF1 RAD21 SCRT2 ZNF207 RELB CHST11 WASHC4 EID3 PIR42556 GC12P104758
GH12G104694 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.0 -10957 1.7 FEZF1 EGR1 ZSCAN5C ZNF143 FOS ETV6 RELB IKZF2 CREM CBFB CHST11 WASHC4 PIR42556 GC12M104604
GH12G104710 0.9 Ensembl ENCODE 0.7 +4.8 4768 1.0 BCOR ZNF146 ADNP ZMYM3 ZNF580 FOXP2 KDM1A RAD21 CHST11 APPL2 PIR42556 GC12P104758
GH12G104666 2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -35.8 -35805 7.8 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 YY1 ZNF207 FOS ZNF263 JUNB CHST11 WASHC4 RPL18AP3 TXNRD1 EID3 SLC41A2 PIR42556 GC12M104604
GH12G104706 0.7 dbSUPER 0.7 +1.2 1230 1.8 CTCF TFAP4 RAD21 FOSL1 ZNF366 FOS ZNF654 MNT JUND ZNF692 CHST11 PIR42556 GC12P104758
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR42556 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR42556 Gene

Chromosome:
12
Start:
104,706,484 bp from pter
End:
104,706,510 bp from pter
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR42556 Gene

Genes around PIR42556 on UCSC Golden Path with GeneCards custom track

PIR42556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42556 Gene

Proteins for PIR42556 Gene

Post-translational modifications for PIR42556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42556 Gene

Domains & Families for PIR42556 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42556 Gene

Function for PIR42556 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42556 Gene

Localization for PIR42556 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIR42556 Gene

Pathways & Interactions for PIR42556 Gene

SuperPathways for PIR42556 Gene

No Data Available

Interacting Proteins for PIR42556 Gene

Gene Ontology (GO) - Biological Process for PIR42556 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42556 Gene

Drugs & Compounds for PIR42556 Gene

No Compound Related Data Available

Transcripts for PIR42556 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42556 Gene

No ASD Table

Relevant External Links for PIR42556 Gene

GeneLoc Exon Structure for
PIR42556

No data available for mRNA/cDNA for PIR42556 Gene

Expression for PIR42556 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42556 Gene

Orthologs for PIR42556 Gene

No data available for Orthologs and Evolution for PIR42556 Gene

Paralogs for PIR42556 Gene

No data available for Paralogs for PIR42556 Gene

Variants for PIR42556 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR42556 Gene

Disorders for PIR42556 Gene

No disorders were found for PIR42556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42556 Gene

Publications for PIR42556 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for PIR42556 Gene

Sources for PIR42556 Gene

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