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Aliases for PIR42293 Gene

Subcategory (RNA class) for PIR42293 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR42293 Gene

No Aliases found

ORGUL Members for PIR42293 Gene

No data available for External Ids for PIR42293 Gene

Summaries for PIR42293 Gene

GeneCards Summary for PIR42293 Gene

PIR42293 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42293 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42293 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42293 Gene

Genomics for PIR42293 Gene

GeneHancer (GH) Regulatory Elements for PIR42293 Gene

Promoters and enhancers for PIR42293 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I000319 Enhancer 1 FANTOM5 dbSUPER 550.8 -0.4 -377 0.3 PKNOX1 SMAD1 EBF1 RBBP5 BATF KLF5 IRF4 RELA POLR2A NFATC1 PIR42293 IRF4 DUSP22 GC06P000310
GH06I000323 Enhancer 0.8 ENCODE dbSUPER 550.8 +1.0 953 0.2 HDGF SMARCE1 PKNOX1 DPF2 ZNF217 CTBP1 POLR2A NFATC1 NBN ZNF207 PIR42293 IRF4 GC06M000335 DUSP22
GH06I000321 Enhancer 0.7 Ensembl dbSUPER 550.8 +1.3 1298 0.4 SMARCE1 ZNF217 CTBP1 ZNF687 POLR2A ATF7 DPF2 PIR42293 IRF4 GC06M000335 DUSP22
GH06I000316 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.8 -2.8 -2828 2.2 HDGF SMAD1 RB1 BMI1 YBX1 BATF KLF5 IRF4 ZNF207 ZNF143 IRF4 ENSG00000205653 DUSP22 PIR42293 GC06P000310
GH06I000322 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 0.8 +3.0 2974 0.8 HDGF ZNF687 ZNF740 CEBPB EBF1 CEBPG ZIC2 ATF2 RELA TARDBP PIR42293 GC06M000335 DUSP22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR42293 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42293 Gene

Genomic Locations for PIR42293 Gene
chr6:320,303-320,329
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr6:320,303-320,329
(GRCh37/hg19)

Genomic View for PIR42293 Gene

Genes around PIR42293 on UCSC Golden Path with GeneCards custom track

PIR42293 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42293 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42293 Gene

Proteins for PIR42293 Gene

Post-translational modifications for PIR42293 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42293 Gene

Domains & Families for PIR42293 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42293 Gene

Function for PIR42293 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42293 Gene

Localization for PIR42293 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42293 Gene

Pathways & Interactions for PIR42293 Gene

SuperPathways for PIR42293 Gene

No Data Available

Interacting Proteins for PIR42293 Gene

Gene Ontology (GO) - Biological Process for PIR42293 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42293 Gene

Drugs & Compounds for PIR42293 Gene

No Compound Related Data Available

Transcripts for PIR42293 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42293 Gene

No ASD Table

Relevant External Links for PIR42293 Gene

GeneLoc Exon Structure for
PIR42293

No data available for mRNA/cDNA for PIR42293 Gene

Expression for PIR42293 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42293 Gene

Orthologs for PIR42293 Gene

No data available for Orthologs and Evolution for PIR42293 Gene

Paralogs for PIR42293 Gene

No data available for Paralogs for PIR42293 Gene

Variants for PIR42293 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42293 Gene

Disorders for PIR42293 Gene

No disorders were found for PIR42293 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42293 Gene

Publications for PIR42293 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR42293 Gene

Sources for PIR42293 Gene

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