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Aliases for PIR42143 Gene

Subcategory (RNA class) for PIR42143 Gene

piRNA

Quality Score for this RNA gene is

11.2

Aliases for PIR42143 Gene

No Aliases found

ORGUL Members for PIR42143 Gene

Previous GeneCards Identifiers for PIR42143 Gene

  • GC09P096948
  • GC09P096952
  • GC09P096957
  • GC09P094185
  • GC09P094187
  • GC09P094190
  • GC09P094192
  • GC09P094194
  • GC09P094196

No data available for External Ids for PIR42143 Gene

Summaries for PIR42143 Gene

GeneCards Summary for PIR42143 Gene

PIR42143 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42143 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR42143

Additional gene information for PIR42143 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42143 Gene

Genomics for PIR42143 Gene

Regulatory Elements for PIR42143 Gene

Enhancers for PIR42143 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H094164 1.8 FANTOM5 ENCODE dbSUPER 0.4 -8.4 -8352 5 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 MFSD14B ENSG00000269946 LOC100132077 PIR42143 GC09P094197
GH09H094172 0.6 ENCODE 0.7 -2.3 -2251 1 PKNOX1 HLF JUNB BATF BCL11A CREM RUNX3 SUPT5H PIR42143 GC09P094197 ENSG00000269946
GH09H094175 0.5 ENCODE 0.7 -0.2 -193 1 POLR2A RUNX3 SPI1 SUPT5H LOC100132077 GC09P094197 PIR42143 ENSG00000269946
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR42143 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR42143 Gene

Chromosome:
9
Start:
94,175,952 bp from pter
End:
94,176,049 bp from pter
Size:
98 bases
Orientation:
Plus strand

Genomic View for PIR42143 Gene

Genes around PIR42143 on UCSC Golden Path with GeneCards custom track

PIR42143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR42143 Gene

ORGUL Member Location for PIR42143 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42143 Gene

Proteins for PIR42143 Gene

Post-translational modifications for PIR42143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42143 Gene

Domains & Families for PIR42143 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42143 Gene

Function for PIR42143 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42143 Gene

Localization for PIR42143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42143 Gene

Pathways & Interactions for PIR42143 Gene

SuperPathways for PIR42143 Gene

No Data Available

Interacting Proteins for PIR42143 Gene

Gene Ontology (GO) - Biological Process for PIR42143 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42143 Gene

Drugs & Compounds for PIR42143 Gene

No Compound Related Data Available

Transcripts for PIR42143 Gene

fRNAdb Secondary structures for PIR42143 Gene

  • FR202466

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42143 Gene

No ASD Table

Relevant External Links for PIR42143 Gene

GeneLoc Exon Structure for
PIR42143

No data available for mRNA/cDNA for PIR42143 Gene

Expression for PIR42143 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42143 Gene

Orthologs for PIR42143 Gene

No data available for Orthologs and Evolution for PIR42143 Gene

Paralogs for PIR42143 Gene

No data available for Paralogs for PIR42143 Gene

Variants for PIR42143 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR42143 Gene

Disorders for PIR42143 Gene

No disorders were found for PIR42143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42143 Gene

Publications for PIR42143 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for PIR42143 Gene

Sources for PIR42143 Gene

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