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Aliases for PIR39680 Gene

Subcategory (RNA class) for PIR39680 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR39680 Gene

No Aliases found

ORGUL Members for PIR39680 Gene

Previous GeneCards Identifiers for PIR39680 Gene

  • GC22P037117

No data available for External Ids for PIR39680 Gene

Summaries for PIR39680 Gene

GeneCards Summary for PIR39680 Gene

PIR39680 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR39680 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR39680 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR39680 Gene

Genomics for PIR39680 Gene

Regulatory Elements for PIR39680 Gene

Enhancers for PIR39680 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H036737 0.5 Ensembl ENCODE 0.4 +16.6 16613 1 LOC105373021 PIR39680 PIR38212 GC22M036764
GH22H036757 0.6 ENCODE 0.3 +36.7 36694 0 CTCF ZNF654 TRIM22 REST RAD21 GLIS1 ZNF143 SMC3 ENSG00000234979 PVALB ENSG00000229971 TEX33 NCF4 ENSG00000231467 TMPRSS6 PIR38212 GC22M036764 PIR39680
GH22H036734 0.4 ENCODE 0.4 +13.8 13803 0 RUNX3 BATF PIR39680 PIR38212 GC22M036764
GH22H036733 0.4 ENCODE 0.4 +13.2 13228 0 RUNX3 EZH2 ENSG00000234979 PVALB ENSG00000229971 IL2RB ENSG00000231467 TMPRSS6 LOC105373021 PIR39680 PIR38212 GC22M036764
GH22H036763 0.2 ENCODE 0.3 +42.7 42704 0 ENSG00000234979 PVALB ENSG00000229971 TEX33 NCF4 ENSG00000231467 TMPRSS6 IFT27 GC22M036764 PIR38212
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PIR39680 on UCSC Golden Path with GeneCards custom track

Genomic Location for PIR39680 Gene

Chromosome:
22
Start:
36,721,088 bp from pter
End:
36,721,114 bp from pter
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR39680 Gene

Genes around PIR39680 on UCSC Golden Path with GeneCards custom track

PIR39680 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR39680 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR39680 Gene

Proteins for PIR39680 Gene

Post-translational modifications for PIR39680 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR39680 Gene

Domains & Families for PIR39680 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR39680 Gene

Function for PIR39680 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR39680 Gene

Localization for PIR39680 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR39680 Gene

Pathways & Interactions for PIR39680 Gene

SuperPathways for PIR39680 Gene

No Data Available

Interacting Proteins for PIR39680 Gene

Gene Ontology (GO) - Biological Process for PIR39680 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR39680 Gene

Drugs & Compounds for PIR39680 Gene

No Compound Related Data Available

Transcripts for PIR39680 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR39680 Gene

No ASD Table

Relevant External Links for PIR39680 Gene

GeneLoc Exon Structure for
PIR39680

No data available for mRNA/cDNA for PIR39680 Gene

Expression for PIR39680 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR39680 Gene

Orthologs for PIR39680 Gene

No data available for Orthologs and Evolution for PIR39680 Gene

Paralogs for PIR39680 Gene

No data available for Paralogs for PIR39680 Gene

Variants for PIR39680 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PIR39680 Gene

Disorders for PIR39680 Gene

No disorders were found for PIR39680 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR39680 Gene

Publications for PIR39680 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR39680 Gene

Sources for PIR39680 Gene

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