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Aliases for PIK3CD-AS1 Gene

Subcategory (RNA class) for PIK3CD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PIK3CD-AS1 Gene

  • PIK3CD Antisense RNA 1 2 3 4 5
  • C1orf200 3 4
  • Chromosome 1 Open Reading Frame 200 2
  • PIK3CD Antisense Gene Protein 1 4

External Ids for PIK3CD-AS1 Gene

Previous HGNC Symbols for PIK3CD-AS1 Gene

  • C1orf200

Summaries for PIK3CD-AS1 Gene

GeneCards Summary for PIK3CD-AS1 Gene

PIK3CD-AS1 (PIK3CD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PIK3CD-AS1 Gene

Genomics for PIK3CD-AS1 Gene

Regulatory Elements for PIK3CD-AS1 Gene

Enhancers for PIK3CD-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F009651 0.2 ENCODE 0.8 +0.6 636 5.5 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A YBX1 ZBTB40 ZNF121 EGR1 CTNNBIP1 PIK3CD-AS1 PIK3CD
GH01F009659 0.5 ENCODE 0.8 -4.5 -4509 0.1 ATF1 PKNOX1 CREB3L1 GLIS2 ZNF766 CBX5 ZNF548 FOS ZHX2 KAT8 CTNNBIP1 PIK3CD-AS1 RPL26P7
GH01F009657 0.6 ENCODE 0.8 -3.4 -3350 1.8 HDGF PKNOX1 MLX ARNT CREB3L1 ARID4B DMAP1 FEZF1 SLC30A9 ZNF766 CTNNBIP1 PIK3CD-AS1 RPL26P7
GH01F009660 0.8 ENCODE 0.8 -4.9 -4932 0.2 PKNOX1 CREB3L1 PTRF THAP11 SMAD5 USF2 CEBPB ZEB2 KAT8 CREB3 CTNNBIP1 PIK3CD-AS1 RPL26P7
GH01F009642 1.4 Ensembl ENCODE 0.4 +9.5 9486 4.6 ZFP64 ZEB1 ZNF121 EGR1 ZNF354C EGR2 ZNF202 ZNF362 ZNF680 CEBPB ENSG00000223989 H6PD MIR34A LINC01759 CTNNBIP1 PIK3CD-AS1 PIK3CD
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PIK3CD-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for PIK3CD-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000668847 1586 3601 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A ZBTB40 ZNF121 EGR1 SCRT2

Genomic Location for PIK3CD-AS1 Gene

Chromosome:
1
Start:
9,652,610 bp from pter
End:
9,654,586 bp from pter
Size:
1,977 bases
Orientation:
Minus strand

Genomic View for PIK3CD-AS1 Gene

Genes around PIK3CD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PIK3CD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIK3CD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PIK3CD-AS1 Gene

Proteins for PIK3CD-AS1 Gene

  • Protein details for PIK3CD-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SR53-CA200_HUMAN
    Recommended name:
    Putative uncharacterized protein PIK3CD-AS1
    Protein Accession:
    Q5SR53
    Secondary Accessions:
    • Q8N853

    Protein attributes for PIK3CD-AS1 Gene

    Size:
    167 amino acids
    Molecular mass:
    18168 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PIK3CD-AS1 Gene

Post-translational modifications for PIK3CD-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PIK3CD-AS1 Gene

Domains & Families for PIK3CD-AS1 Gene

Protein Domains for PIK3CD-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PIK3CD-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIK3CD-AS1 Gene

Function for PIK3CD-AS1 Gene

Phenotypes for PIK3CD-AS1 Gene

GenomeRNAi human phenotypes for PIK3CD-AS1:
genes like me logo Genes that share phenotypes with PIK3CD-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIK3CD-AS1 Gene

Localization for PIK3CD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PIK3CD-AS1 Gene

Pathways & Interactions for PIK3CD-AS1 Gene

SuperPathways for PIK3CD-AS1 Gene

No Data Available

Interacting Proteins for PIK3CD-AS1 Gene

Gene Ontology (GO) - Biological Process for PIK3CD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIK3CD-AS1 Gene

Transcripts for PIK3CD-AS1 Gene

mRNA/cDNA for PIK3CD-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PIK3CD-AS1 Gene

No ASD Table

Relevant External Links for PIK3CD-AS1 Gene

GeneLoc Exon Structure for
PIK3CD-AS1
ECgene alternative splicing isoforms for
PIK3CD-AS1

Expression for PIK3CD-AS1 Gene

mRNA expression in normal human tissues for PIK3CD-AS1 Gene

Protein differential expression in normal tissues from HIPED for PIK3CD-AS1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PIK3CD-AS1 Gene



Protein tissue co-expression partners for PIK3CD-AS1 Gene

- Elite partner
genes like me logo Genes that share expression patterns with PIK3CD-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PIK3CD-AS1 Gene

Orthologs for PIK3CD-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PIK3CD-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1orf200 35
  • 96 (a)
OneToOne
Species where no ortholog for PIK3CD-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PIK3CD-AS1 Gene

ENSEMBL:
Gene Tree for PIK3CD-AS1 (if available)
TreeFam:
Gene Tree for PIK3CD-AS1 (if available)

Paralogs for PIK3CD-AS1 Gene

No data available for Paralogs for PIK3CD-AS1 Gene

Variants for PIK3CD-AS1 Gene

Sequence variations from dbSNP and Humsavar for PIK3CD-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111554447 -- 9,652,804(+) CTGTG(A/C/G)GTGGG intron-variant, nc-transcript-variant
rs111697224 -- 9,654,307(+) TCCAC(A/G)CCGCC intron-variant, nc-transcript-variant
rs112023116 -- 9,652,456(+) TCCCG(G/T)GCCTC intron-variant
rs113243543 -- 9,652,483(+) GTTTG(A/C)TGCAG intron-variant
rs113812179 -- 9,654,074(+) TCTGA(C/G)AAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PIK3CD-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv508847 CNV insertion 20534489

Variation tolerance for PIK3CD-AS1 Gene

Gene Damage Index Score: 1.80; 33.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PIK3CD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIK3CD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PIK3CD-AS1 Gene

Disorders for PIK3CD-AS1 Gene

Relevant External Links for PIK3CD-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PIK3CD-AS1

No disorders were found for PIK3CD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PIK3CD-AS1 Gene

Publications for PIK3CD-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for PIK3CD-AS1 Gene

Sources for PIK3CD-AS1 Gene

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