SERPINB5 Gene
protein-coding GIFtS : 62
GC18P059297
serpin peptidase inhibitor, clade B (ovalbumin), member 5 (Previous names: serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: PI5 )
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Aliases & Descriptions for SERPINB5
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Maspin 3 PI5 2 , 3 , 5 maspin 1 , 2
Descriptions Protease inhibitor 5 3 protease inhibitor 5 (maspin) 2 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5 1 , 2 serpin peptidase inhibitor, clade B (ovalbumin), member 5 2
Search outside databases for aliases for SERPINB5 genePrevious GC identifers: GC18P060982 GC18P061117 GC18P059293
Summaries for SERPINB5 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: SPB5_HUMAN, P36952 Function : Tumor suppressor. It blocks the growth, invasion, and metastatic properties of mammarytumors. As it does not undergo the S (stressed) to R (relaxed) conformational transitioncharacteristic of active serpins, it exhibits no serine protease inhibitory activity
Gene Wiki entry for SERPINB5 (Maspin)
Genomic Location for SERPINB5
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SERPINB5 gene Entrez Gene cytogenetic band: 18q21.3 Ensembl cytogenetic band: 18q21.33 HGNC cytogenetic band: 18q21.3 SERPINB5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure
GeneLoc location for GC18P059297:
(about GC identifiers )
Start:
59,295,199 bp from pter
End:
59,323,297 bp from pter
Size:
28,099 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000018.8 NT_025028.13 Proteins for SERPINB5
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SPB5_HUMAN, P36952 (See
protein sequence )Recommended Name: Serpin B5 Size : 375 amino acids; 42100 Da
Subcellular location : Secreted, extracellular space
PDB structures from and Proteopedia : 1WZ9 (3D)
 1XQG (3D)
 1XQJ (3D)
 1XU8 (3D)
 
Secondary accessions : B2R6Y4 Q6N0B4 Q8WW89Alternative splicing : 2 isoforms : P36952-1 P36952-2
REFSEQ proteins: NP_002630.2 ENSEMBL proteins: ENSP00000372221 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: SERPINB5 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA --
About this table Antibodies for SERPINB5: Assays for SERPINB5:
Protein
Domains/ Families for SERPINB5(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P36952 ProtoNet protein and cluster: P36952
2 Blocks protein families : IPB000215 Serpin IPB000240 Maspin signature UniProtKB/Swiss-Prot: SPB5_HUMAN, P36952 Similarity : Belongs to the serpin family. Ov-serpin subfamily
Gene Function for SERPINB5
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): BC020713 Applied Biosystems Silencer ® siRNAs for SERPINB5 Sigma-Aldrich siRNA and siRNA Panels for SERPINB5 Sigma-Aldrich shRNA Panels and shRNA for SERPINB5 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002639                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002639                                  untagged cDNA clones in CMV expression vector (see all 2 ): BC020713  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002639 UniProtKB/Swiss-Prot: SPB5_HUMAN, P36952 Function : Tumor suppressor. It blocks the growth, invasion, and metastatic properties of mammarytumors. As it does not undergo the S (stressed) to R (relaxed) conformational transitioncharacteristic of active serpins, it exhibits no serine protease inhibitory activity
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Serpinb5) :1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004867 serine-type endopeptidase inhibitor activity
IEA --
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Pathways & Interactions for SERPINB5
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for SERPINB5 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for SERPINB5 5/19 Interacting proteins for SERPINB5 (ENSP00000372221 3 ) via UniProtKB, MINT, and/or STRING (see all 19
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
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Drugs & Compounds for SERPINB5 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SERPINB5 9 Novoseek chemical compound relationships for SERPINB5 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
scca1
68.75
4
14647462 (2), 9817977 (1)
matrigel
43.23
3
11601042 (1), 9433491 (1), 8814994 (1)
cytosine
21.05
10
10709100 (4), 16457875 (2), 14670180 (1), 12789271 (1)
p002
17.34
3
16918974 (1), 17174141 (1), 14647462 (1)
p005
5.18
1
14647462 (1)
lipid
1.78
2
12813462 (1), 12707024 (1)
nitric oxide
0.00
25
12707024 (5), 19147537 (5), 16546864 (3), 10936673 (1) (see all 5 )
steroid
0.00
1
16625090 (1)
progesterone
0.00
2
16625090 (1), 16614520 (1)
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Transcripts for SERPINB5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): BC020713 Sigma-Aldrich siRNA and siRNA Panels for SERPINB5 Sigma-Aldrich shRNA Panels and shRNA for SERPINB5 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002639
REFSEQ mRNAs for SERPINB5 gene: NM_002639.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002639
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002639                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002639                                  untagged cDNA clones in CMV expression vector (see all 2 ): BC020713  
Additional cDNA sequence: AF086216.1 AK301667.1 AK312765.1 BC020713.1 BX640597.1 U04313.1
8 DOTS entries : DT.97838665 DT.212509 DT.100664178 DT.121103123 DT.95160144 DT.95262537 DT.91674020 DT.121103126
24/54 AceView cDNA sequences (see all 54
):CB140067 BX282484 BG677096 BG741238 CB144455 AL602554 CB122363 BQ228585 CB119707 CA429745 AA294992 BU685516 BQ217236 CB122679 BC020713 AL703138 BF056445 BM955647 AW951580 AL701226 BM821493 CB122437 U04313 AL602439
highest scoring ESTs for SERPINB5 :U04313 AI633911 AI656426 AI656538 BE122695 BF056445 BF737955 BG285760 BG677096 BG682023
Unigene Cluster for SERPINB5: Serpin peptidase inhibitor, clade B (ovalbumin), member 5 Hs.55279 [show with all ESTs ] Unigene Representative Sequence: BX640597 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000382771
Expression for SERPINB5
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SERPINB5 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SERPINB5 1 / 2 / 3
7 probe-sets matching SERPINB5 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CATTGTAAATSOURCE GeneReport for Unigene cluster: Hs.55279 Expression variation in blood from EXPOLDB for SERPINB5
UniProtKB/Swiss-Prot: SPB5_HUMAN, P36952 Tissue specificity : Normal mammary epithelial cells
Orthologs for SERPINB5
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SERPINB5 gene from 5/7 species (see all 7
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
SERPINB51
--
serpin peptidase inhibitor, clade B (ovalbumin), member more
90.2(n) 92.51(a)
476177 XM_533382.2 XP_533382.2
chimpanzee (Pan troglodytes)
SERPINB51
--
serpin peptidase inhibitor, clade B (ovalbumin), member more
99.47(n) 99.2(a)
468566 XM_523955.2 XP_523955.2
cow (Bos taurus)
SERPINB51
--
serpin peptidase inhibitor, clade B (ovalbumin), member more
89.13(n) 88.77(a)
534323 XM_614054.3 XP_614054.3
rat (Rattus norvegicus)
Serpinb51
--
serine (or cysteine) peptidase inhibitor, clade B, more
85.96(n) 88(a)
116589 NM_057108.1 NP_476449.1
mouse (Mus musculus)
Serpinb51 , 5
15
serine (or cysteine) peptidase inhibitor, clade B, more 1, 5
86.58(n) 1 89.07(a) 1
20724 1 NM_009257.3 1 NP_033283.1 1 AI462524 5 AI646751 5 (see all 10 )
About this table Species with no ortholog for SERPINB5 ENSEMBL Gene Tree for SERPINB5 Paralogs for SERPINB5 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SERPINB5 gene SERPINC1 2 SERPINH1 2
SNPs/Variants for SERPINB5 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SERPINB5 (up to first 250kb)
Disorders & Mutations for SERPINB5
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 154790 10/62 Novoseek disease relationships for SERPINB5 gene (see all 62
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
metastasis
67.04
122
17352241 (6), 18367129 (5), 12507299 (4), 16540429 (4) (see all 79 )
tumors
66.64
443
17396143 (8), 16799655 (7), 12011991 (7), 12425757 (6) (see all 99 )
breast cancer
63.58
134
12493023 (8), 16491398 (7), 11440731 (7), 12220518 (6) (see all 57 )
myoepithelioma
63.24
2
12610349 (1), 11795829 (1)
carcinoma
60.51
84
15009909 (5), 18236066 (5), 15608662 (4), 17936671 (4) (see all 38 )
prostate cancer
59.48
73
12006534 (6), 18931702 (6), 19285254 (6), 17458898 (4) (see all 33 )
adenoma follicular
54.86
4
12964023 (1), 15009909 (1), 16892558 (1), 14532972 (1)
breast carcinoma
53.80
10
9865722 (2), 12425757 (1), 12231537 (1), 11596016 (1) (see all 7 )
cancer
53.58
93
9299418 (3), 14991928 (3), 11309327 (2), 15872371 (2) (see all 58 )
carcinoma ductal
50.51
13
12786889 (6), 12425757 (1), 15256060 (1), 12493023 (1) (see all 5 )
About this table Human Gene Mutation Database : SERPINB5
Medical News for SERPINB5 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SERPINB5 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/286 PubMed articles for SERPINB5 gene (see all 286
): Maspin, a serpin with tumor-suppressing activity in human mammary epithelial cells. (PubMed id 8290962) 1, 2, 3, 4 Zou Z.... Sager R. (1994) The high resolution crystal structure of the human tumor suppressor maspin reveals a novel conformational switch in the G-helix. (PubMed id 15760906) 1, 3, 4 Law R.H.... Whisstock J.C. (2005) The tumor suppressor maspin does not undergo the stressed to relaxed transition or inhibit trypsin-like serine proteases. Evidence that maspin is not a protease inhibitory serpin. (PubMed id 7797587) 1, 3, 4 Pemberton P.A.... Barr P.J. (1995) Maspin is physically associated with [beta]1 integrin regulating cell adhesion in mammary epithelial cells. (PubMed id 16720730) 1, 2, 3 Cella N....Zhang M. (2006) A serine proteinase inhibitor locus at 18q21.3 contains a tandem duplication of the human squamous cell carcinoma antigen gene. (PubMed id 7724531) 1, 2, 3 Schneider S.S....Silverman G.A. (1995) The paradoxical expression of maspin in ovarian carcinoma. (PubMed id 12231537) 1, 3 Sood A.K....Hendrix M.J. (2002) Maspin expression and its clinicopathological significance in tumorigenesis and progression of gastric cancer. (PubMed id 14991928) 1, 3 Wang M.C....Li Y. (2004) Tamoxifen induces the expression of maspin through estrogen receptor-alpha. (PubMed id 15145521) 1, 3 Liu Z....Zhang M. (2004) Pleiotrophic inhibition of pericellular urokinase-type plasminogen activator system by endogenous tumor suppressive maspin. (PubMed id 11751384) 1, 3 Biliran H. and Sheng S. (2001) Maspin and p53 protein expression in gastric adenocarcinoma and its clinical applications. (PubMed id 18091326) 1, 3 Lee D.Y....Lee S. (2008)
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Genome Databases showing SERPINB5
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SERPINB5
(According to HUGE )
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Specialized Databases showing SERPINB5 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for SERPINB5 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for SERPINB5:
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Aliases for SERPINB5
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009