PHB2 Gene
protein-coding GIFtS: 54
GCID: GC12M007074
|
|
prohibitin 2
| |
Aliases
for PHB2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Prohibitin 21 2 | | BAP2 3 | | REA1 2 3 5 | | D-Prohibitin1 | | BCAP371 2 | | B-Cell Receptor-Associated Protein BAP372 3 | | Bap371 2 | | PNAS-1412 | | P221 | | B-Cell Associated Protein2 | | Repressor Of Estrogen Receptor Activity2 3 | | Prohibitin-21 |
Export aliases for PHB2 gene to outside databasesPrevious GC identifer: GC12M006945 |
Summaries
for PHB2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: PHB2_HUMAN, Q99623Function: Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histonedeacetylases (By similarity). Functions as an estrogen receptor (ER)-selective coregulator that potentiates theinhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation ofER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging
Gene Wiki entry for PHB2
|
Genomic Views
for PHB2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000012.11 NC_018923.1 NT_009759.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the PHB2 gene promoter:
SRF Sp1 HFH-1 MyoD
Other transcription factors
Search SABiosciences Chromatin IP Primers for PHB2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PHB2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 12p13 Ensembl cytogenetic band: 12p13.31 HGNC cytogenetic band: 12p13PHB2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12M007074: view genomic region
(about GC identifiers)
Start:
|
7,074,490 bp from pter |
End:
|
7,079,988 bp from pter |
Size:
|
5,499 bases |
Orientation:
|
minus strand |
|
Proteins
for PHB2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: PHB2_HUMAN, Q99623 (See
protein sequence)Recommended Name: Prohibitin-2 Size: 299 amino acids; 33296 Da
Subunit: Interacts with PHB, ESR1, HDAC1 and HDAC5 (By similarity). Interacts with ZNF703. Interacts with STOML2
Subcellular location: Mitochondrion inner membrane (By similarity). Cytoplasm (By similarity). Nucleus (By similarity).Note=Also cytoplasmic and nuclear (By similarity)
Developmental stage: Levels of expression in fibroblasts decrease heterogeneously during cellular aging
Secondary accessions: B4DP75 Q2YDA4 Q7KYU3 Q92978Alternative splicing: 2 isoforms: Q99623-1 Q99623-2 Explore the universe of human proteins at neXtProt for PHB2: NX_Q99623
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q99623
PHB2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001138303.1 NP_001254629.1
ENSEMBL proteins: ENSP00000440040 ENSP00000438634 ENSP00000441875 ENSP00000440317 ENSP00000441662 ENSP00000438068 ENSP00000439029 ENSP00000445972 ENSP00000382362 ENSP00000412856
Human Recombinant Protein Products for PHB2:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
PHB2 for ontologies About GeneDecksing
PHB2 Antibody Products:
Assay Products for PHB2: |
Protein
Domains /
Families
for PHB2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
PHB2 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q99623ProtoNet protein and cluster: Q99623 1 Blocks protein family: IPB000163 Prohibitin signature
UniProtKB/Swiss-Prot: PHB2_HUMAN, Q99623Similarity: Belongs to the prohibitin family |
Function
for PHB2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: PHB2_HUMAN, Q99623Function: Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histonedeacetylases (By similarity). Functions as an estrogen receptor (ER)-selective coregulator that potentiates theinhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation ofER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in agingInduction: Expression increases approximately 3-fold upon entry into G1 phase compared to other phases of the cellcycle. Also induced following inhibition of mitochondrial protein synthesis by thiamphenicol Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
PHB2 for ontologies About GeneDecksing
Phenotypes:
5 GenomeRNAi human phenotypes for PHB2:
7 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Phb2):
PHB2 for phenotypes About GeneDecksing
Animal Models:
Mouse knock-outs for PHB2: Phb2tm1Katz Phb2tm1.1Tlan
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PHB2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PHB2 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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Synthesis Service for PHB2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat PHB2 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PHB2 |
|
Pathways & Interactions
for PHB2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Protein Stability | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 
Cell Signaling Technology (CST) Pathway for PHB2
PHB2 for pathways About GeneDecksing
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PHB2
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/554 Interacting proteins for PHB2 (Q996231, 2, 3 ENSP000003823624) via UniProtKB, MINT, STRING, and/or I2D (see all 554)About this table
Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006351 | transcription, DNA-dependent |
IEA | -- | | GO:0033147 | negative regulation of intracellular estrogen receptor signaling pathway |
IEA | -- | | GO:0033600 | negative regulation of mammary gland epithelial cell proliferation |
IEA | -- | | GO:0045892 | negative regulation of transcription, DNA-dependent |
IDA | 10359819 | | GO:0060744 | mammary gland branching involved in thelarche |
IEA | -- |
PHB2 for ontologies About GeneDecksing
|
Drugs & Compounds
for PHB2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
PHB2 for compounds About GeneDecksing
 Browse Tocris compounds for PHB2
2 Novoseek chemical compound relationships for PHB2 gene About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| estrogen |
37.8 |
5 |
17008324 (2), 16309230 (1), 18835980 (1) |
| estradiol |
16.6 |
1 |
17008324 (1) |
Search CenterWatch for drugs/clinical trials and news about PHB2
|
Transcripts
for PHB2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for PHB2 gene (2 alternative transcripts): NM_001144831.1 NM_001267700.1 Unigene Cluster for PHB2: Prohibitin 2 Hs.504620 [show with all ESTs]Unigene Representative Sequence: BF20469714 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000537646 ENST00000543465(uc010sfu.1) ENST00000546111 ENST00000535923(uc021quf.1 uc021qug.1)
ENST00000542912 ENST00000545555 ENST00000545167 ENST00000544888 ENST00000536316
ENST00000544134 ENST00000546217 ENST00000542294 ENST00000399433(uc010sft.1)
ENST00000440277
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PHB2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PHB2 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): PHB2 (NM_004442) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for PHB2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat PHB2 |
Additional cDNA sequence: AF126021.1 AF150962.1 AF178980.1 AF279895.1 AK298217.1 BC013228.1 BC014766.1 BC110322.1 U72511.1 U72512.1 24/43 DOTS entries (see all 43): DT.87001100 DT.121157357 DT.100879763 DT.100879760 DT.97795310 DT.121157466 DT.95308054 DT.121157247 DT.121157547 DT.121157914 DT.100879762 DT.121157622 DT.121157880 DT.121157529 DT.100879744 DT.95308210 DT.100879746 DT.121157495 DT.121157261 DT.40107282 DT.121158016 DT.121157820 DT.121157251 DT.121157301 24/1074 AceView cDNA sequences (see all 1074): BU190614 AA298905 BE383327 BE893013 BM771071 BE790826 AA019844 BM771489 AA345160 CR604561 BU752120 BQ420268 BF797481 BG757495 BQ687491 BC014766 CA488106 AA128956 BQ069084 BQ686187 BM755818 AF178980 BM755867 BM744911
GeneLoc Exon Structure
|
Expression
for PHB2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| PHB2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CGATGGTCCC
About this image
See PHB2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for PHB2
SOURCE GeneReport for Unigene cluster: Hs.504620
SABiosciences Expression via Pathway-Focused PCR Array including PHB2:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for PHB2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat PHB2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PHB2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PHB2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PHB2 |
Orthologs
for PHB2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for PHB2 gene from 10/38 species (see all 38) About this table
ENSEMBL Gene Tree for PHB2 (if available)
TreeFam Gene Tree for PHB2 (if available) |
Paralogs
for PHB2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for PHB2 gene
2 SIMAP similar genes for PHB2 using alignment to 9 protein entries: PHB2_HUMAN (see all proteins):PHB ZNF607
PHB2 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for PHB2
PGOHUM00000238914
|
Genomic Variants
for PHB2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 12 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for PHB2 (7074490 - 7079988 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for PHB2: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PHB2 |
|
Disorders
/ Diseases
for PHB2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
PHB2 for disorders About GeneDecksing
OMIM gene information: 610704
OMIM disorders: --
20/21  diseases for PHB2 (see all 21): About MalaCardssevere acute respiratory syndrome enthesopathy ankylosing spondylitis reactive arthritis
dysentery psoriatic arthritis onchocerciasis dyslexia
balanitis urethritis arthropathy gastroenteritis
schistosomiasis synovitis spondylitis diarrhea
arthritis breast cancer malaria carcinoma
8 diseases from the University of Copenhagen DISEASES database for PHB2:Arthritis Ankylosing spondylitis Urethritis Arthropathy
Psoriatic arthritis Synovitis Enthesopathy Dysentery Human Genome Epidemiology (HuGE) Navigator: PHB2 (2 documents)
Export disorders for PHB2 gene to outside databases
|
Publications
for PHB2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for PHB2 gene, integrated from 9 sources (see all 76):
(articles sorted by number of sources associating them with PHB2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Mammalian prohibitin proteins respond to mitochondrial stress and decrease during cellular senescence. (PubMed id 11302691)1, 2, 3 Coates P.J.... Wright E.G. (2001)
- The finished DNA sequence of human chromosome 12. (PubMed id 16541075)1, 2 Scherer S.E.... Gibbs R.A. (2006)
- Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)1, 2 Rush J.... Comb M.J. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PubMed id 10931946)1, 2 Hu R.-M.... Chen J.-L. (2000)
- An estrogen receptor-selective coregulator that potentiates the effectiveness of antiestrogens and represses the activity of estrogens. (PubMed id 10359819)1, 2 Montano M.M....Katzenellenbogen B.S. (1999)
- The prohibitin family of mitochondrial proteins regulate replicative lifespan. (PubMed id 9259555)1, 3 Coates P.J....Hall P.A. (1997)
- Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination. (PubMed id 9074930)1, 2 Ansari-Lari M.A....Gibbs R.A. (1997)
- PHB2 protects sister-chromatid cohesion in mitosis. (PubMed id 17656096)1, 9 Takata H....Fukui K. (2007)
- Mitochondrial functions and estrogen receptor-dependent nuclear translocation of pleiotropic human prohibitin 2. (PubMed id 17008324)1, 9 Kasashima K....Endo H. (2006)
|
External Searches for PHB2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing PHB2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing PHB2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PHB2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for PHB2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for PHB2 gene:
Search GeneIP for patents involving PHB2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for PHB2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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