Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PHACTR2-AS1 Gene

Subcategory (RNA class) for PHACTR2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PHACTR2-AS1 Gene

  • PHACTR2 Antisense RNA 1 2 3 5

External Ids for PHACTR2-AS1 Gene

Summaries for PHACTR2-AS1 Gene

GeneCards Summary for PHACTR2-AS1 Gene

PHACTR2-AS1 (PHACTR2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PHACTR2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PHACTR2-AS1 Gene

Genomics for PHACTR2-AS1 Gene

Regulatory Elements for PHACTR2-AS1 Gene

Enhancers for PHACTR2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H143960 1.2 Ensembl ENCODE 18.1 -398.2 -398180 13 HDAC1 TBP PKNOX1 FOXA2 PTBP1 ZFP64 THRB ZBTB40 RARA TCF12 PLAGL1 PHACTR2-AS1 LTV1 PHACTR2 ZC2HC1B GC06P143999
GH06H143741 1.6 Ensembl ENCODE dbSUPER 10.3 -176.4 -176411 9 PKNOX1 FOXA2 MLX ARID4B FEZF1 DMAP1 FOS SP5 ZHX2 MXD4 LTV1 ENSG00000270890 VDAC1P8 TUBB8P2 PHACTR2 ADAT2 PLAGL1 PHACTR2-AS1 ZC2HC1B GC06P143748
GH06H143528 0.9 Ensembl ENCODE 11.3 +40.7 40731 1 CTCF ZBTB8A ELF1 ZNF121 ZFHX2 CTBP1 ZNF292 IKZF2 EGR2 VDAC1P8 ADAT2 ENSG00000270890 PHACTR2-AS1 LTV1 TUBB8P2 PLAGL1 PHACTR2 LOC105378035
GH06H144005 0.9 ENCODE 10.4 -438.1 -438081 3 HDGF TBP PKNOX1 ATF1 ARNT EGR1 FOS CREM SMAD5 ZBTB11 SF3B5 PHACTR2 PHACTR2-AS1 PLAGL1 ENSG00000276680 HYMAI
GH06H143958 0.6 ENCODE 15.6 -390.1 -390149 2 CTBP1 GATA3 FOXA2 SCRT2 CTBP2 FOXA1 PHACTR2-AS1 PHACTR2 ZC2HC1B LTV1 GC06P143999
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PHACTR2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for PHACTR2-AS1 Gene

Chromosome:
6
Start:
143,554,115 bp from pter
End:
143,569,339 bp from pter
Size:
15,225 bases
Orientation:
Minus strand

Genomic View for PHACTR2-AS1 Gene

Genes around PHACTR2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PHACTR2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PHACTR2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PHACTR2-AS1 Gene

Proteins for PHACTR2-AS1 Gene

Post-translational modifications for PHACTR2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PHACTR2-AS1 Gene

Domains & Families for PHACTR2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PHACTR2-AS1 Gene

Function for PHACTR2-AS1 Gene

Phenotypes From GWAS Catalog for PHACTR2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PHACTR2-AS1 Gene

Localization for PHACTR2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PHACTR2-AS1 Gene

Pathways & Interactions for PHACTR2-AS1 Gene

SuperPathways for PHACTR2-AS1 Gene

No Data Available

Interacting Proteins for PHACTR2-AS1 Gene

Gene Ontology (GO) - Biological Process for PHACTR2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PHACTR2-AS1 Gene

Drugs & Compounds for PHACTR2-AS1 Gene

No Compound Related Data Available

Transcripts for PHACTR2-AS1 Gene

mRNA/cDNA for PHACTR2-AS1 Gene

(18) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PHACTR2-AS1 Gene

No ASD Table

Relevant External Links for PHACTR2-AS1 Gene

GeneLoc Exon Structure for
PHACTR2-AS1
ECgene alternative splicing isoforms for
PHACTR2-AS1

Expression for PHACTR2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PHACTR2-AS1 Gene

Orthologs for PHACTR2-AS1 Gene

Evolution for PHACTR2-AS1 Gene

ENSEMBL:
Gene Tree for PHACTR2-AS1 (if available)
TreeFam:
Gene Tree for PHACTR2-AS1 (if available)

No data available for Orthologs for PHACTR2-AS1 Gene

Paralogs for PHACTR2-AS1 Gene

No data available for Paralogs for PHACTR2-AS1 Gene

Variants for PHACTR2-AS1 Gene

Sequence variations from dbSNP and Humsavar for PHACTR2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000252973 -- 143,570,287(+) CAGGT(A/G)AAGCC upstream-variant-2KB
rs1000304109 -- 143,557,823(+) AGCGA(A/G)GTCAG intron-variant
rs1000909390 -- 143,559,167(+) TTCCA(A/G)TAGAG intron-variant
rs1001012430 -- 143,560,369(+) ATCTT(G/T)AAATT intron-variant
rs1001105714 -- 143,566,756(+) TATTT(G/T)TAAAT intron-variant

Relevant External Links for PHACTR2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PHACTR2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PHACTR2-AS1 Gene

Disorders for PHACTR2-AS1 Gene

Relevant External Links for PHACTR2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PHACTR2-AS1

No disorders were found for PHACTR2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PHACTR2-AS1 Gene

Publications for PHACTR2-AS1 Gene

  1. Genome-wide association analyses identify variants in developmental genes associated with hypospadias. (PMID: 25108383) Geller F … Melbye M (Nature genetics 2014) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for PHACTR2-AS1 Gene

Sources for PHACTR2-AS1 Gene

Content
Loading form....