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Aliases for PGK2 Gene

Aliases for PGK2 Gene

  • Phosphoglycerate Kinase 2 2 3
  • Phosphoglycerate Kinase, Testis Specific 3 4
  • EC 2.7.2.3 4 63
  • PGKB 3 4
  • Phosphoglycerate Kinase Autosomal Pseudogene 3
  • Epididymis Secretory Protein Li 272 3
  • DJ417L20.2 3
  • HEL-S-272 3
  • PGKPS 3

External Ids for PGK2 Gene

Previous GeneCards Identifiers for PGK2 Gene

  • GC06M049755
  • GC06M049800
  • GC06M049861
  • GC06M049753
  • GC06M049483

Summaries for PGK2 Gene

Entrez Gene Summary for PGK2 Gene

  • This gene is intronless, arose via retrotransposition of the phosphoglycerate kinase 1 gene, and is expressed specifically in the testis. Initially assumed to be a pseudogene, the encoded protein is actually a functional phosphoglycerate kinase that catalyzes the reversible conversion of 1,3-bisphosphoglycerate to 3-phosphoglycerate, during the Embden-Meyerhof-Parnas pathway of glycolysis, in the later stages of spermatogenesis.[provided by RefSeq, May 2010]

GeneCards Summary for PGK2 Gene

PGK2 (Phosphoglycerate Kinase 2) is a Protein Coding gene. Among its related pathways are Carbon metabolism and Metabolism. GO annotations related to this gene include phosphoglycerate kinase activity. An important paralog of this gene is PGK1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PGK2 Gene

Genomics for PGK2 Gene

Regulatory Elements for PGK2 Gene

Genomic Location for PGK2 Gene

Start:
49,785,651 bp from pter
End:
49,787,340 bp from pter
Size:
1,690 bases
Orientation:
Minus strand

Genomic View for PGK2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PGK2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGK2 Gene

Proteins for PGK2 Gene

  • Protein details for PGK2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P07205-PGK2_HUMAN
    Recommended name:
    Phosphoglycerate kinase 2
    Protein Accession:
    P07205
    Secondary Accessions:
    • B2R6Y8
    • Q9H107

    Protein attributes for PGK2 Gene

    Size:
    417 amino acids
    Molecular mass:
    44796 Da
    Quaternary structure:
    • Monomer.

neXtProt entry for PGK2 Gene

Proteomics data for PGK2 Gene at MOPED

Post-translational modifications for PGK2 Gene

  • Ubiquitination at Lys91 and Lys156
  • Modification sites at PhosphoSitePlus

Other Protein References for PGK2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for PGK2 Gene

Suggested Antigen Peptide Sequences for PGK2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P07205

UniProtKB/Swiss-Prot:

PGK2_HUMAN :
  • P07205
Family:
  • Belongs to the phosphoglycerate kinase family.
genes like me logo Genes that share domains with PGK2: view

No data available for Gene Families for PGK2 Gene

Function for PGK2 Gene

Molecular function for PGK2 Gene

GENATLAS Biochemistry: phosphoglycerate kinase 2,specifically expressed in spermatogenic cell,highly homologous to PGK1,glycolysis,energy pathway,key enzyme for ATP generation
UniProtKB/Swiss-Prot CatalyticActivity: ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate

Enzyme Numbers (IUBMB) for PGK2 Gene

Gene Ontology (GO) - Molecular Function for PGK2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004618 phosphoglycerate kinase activity NAS 3453121
GO:0005524 ATP binding ISS --
genes like me logo Genes that share ontologies with PGK2: view

Phenotypes for PGK2 Gene

MGI mutant phenotypes for PGK2:
inferred from 1 alleles
GenomeRNAi human phenotypes for PGK2:
genes like me logo Genes that share phenotypes with PGK2: view

Animal Models for PGK2 Gene

MGI Knock Outs for PGK2:

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PGK2

In Situ Assay Products

Flow Cytometry Products

No data available for miRNA , Transcription Factor Targeting and HOMER Transcription for PGK2 Gene

Localization for PGK2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PGK2 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PGK2 Gene COMPARTMENTS Subcellular localization image for PGK2 gene
Compartment Confidence
cytosol 5
nucleus 2
chloroplast 1
lysosome 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for PGK2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005737 cytoplasm IEA --
GO:0005929 cilium --
GO:0035686 sperm fibrous sheath IEA --
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with PGK2: view

Pathways for PGK2 Gene

genes like me logo Genes that share pathways with PGK2: view

Pathways by source for PGK2 Gene

1 GeneGo (Thomson Reuters) pathway for PGK2 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

UniProtKB/Swiss-Prot P07205-PGK2_HUMAN

  • Pathway: Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5

Gene Ontology (GO) - Biological Process for PGK2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006096 glycolytic process NAS 3453121
GO:0016310 phosphorylation NAS 3453121
GO:0030317 sperm motility IEA --
GO:0098779 activation of mitophagy in response to mitochondrial depolarization IMP 22020285
genes like me logo Genes that share ontologies with PGK2: view

Compounds for PGK2 Gene

(3) HMDB Compounds for PGK2 Gene

Compound Synonyms Cas Number PubMed IDs
2-Phosphoglyceric acid
  • 2-(dihydrogen phosphate)Glycerate
2553-59-5
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
ADP
  • adenosindiphosphorsaeure
58-64-0
genes like me logo Genes that share compounds with PGK2: view

Transcripts for PGK2 Gene

mRNA/cDNA for PGK2 Gene

(31) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PGK2 Gene

Phosphoglycerate kinase 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PGK2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PGK2 Gene

No ASD Table

Relevant External Links for PGK2 Gene

GeneLoc Exon Structure for
PGK2
ECgene alternative splicing isoforms for
PGK2

Expression for PGK2 Gene

mRNA expression in normal human tissues for PGK2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PGK2 Gene

This gene is overexpressed in Testis (52.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PGK2 Gene

SOURCE GeneReport for Unigene cluster for PGK2 Gene Hs.367727

mRNA Expression by UniProt/SwissProt for PGK2 Gene

P07205-PGK2_HUMAN
Tissue specificity: Testis specific
genes like me logo Genes that share expressions with PGK2: view

In Situ Assay Products

Orthologs for PGK2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PGK2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PGK2 35
  • 99.36 (n)
  • 99.52 (a)
PGK2 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PGK2 35
  • 88.33 (n)
  • 89.45 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 86 (a)
ManyToMany
PGK2 35
  • 88.57 (n)
  • 90.17 (a)
mouse
(Mus musculus)
Mammalia Pgk2 35
  • 84.89 (n)
  • 85.85 (a)
Pgk2 16
Pgk2 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 81 (a)
ManyToMany
-- 36
  • 82 (a)
ManyToMany
-- 36
  • 83 (a)
ManyToMany
-- 36
  • 83 (a)
ManyToMany
-- 36
  • 84 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 81 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Pgk2 35
  • 85.37 (n)
  • 86.57 (a)
chicken
(Gallus gallus)
Aves PGK1 36
  • 82 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 83 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii pgk1 36
  • 81 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG9961 36
  • 53 (a)
ManyToMany
Pgk 36
  • 68 (a)
ManyToMany
Pgk 37
  • 68 (a)
CG9961 37
  • 56 (a)
worm
(Caenorhabditis elegans)
Secernentea pgk-1 36
  • 69 (a)
OneToMany
T03F1.3 37
  • 69 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PGK1 36
  • 63 (a)
OneToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.6705 35
soybean
(Glycine max)
eudicotyledons Gma.6263 35
thale cress
(Arabidopsis thaliana)
eudicotyledons PGK 35
  • 56.5 (n)
  • 50.65 (a)
rice
(Oryza sativa)
Liliopsida Os02g0169300 35
  • 55.99 (n)
  • 50.9 (a)
Species with no ortholog for PGK2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for PGK2 Gene

ENSEMBL:
Gene Tree for PGK2 (if available)
TreeFam:
Gene Tree for PGK2 (if available)

Paralogs for PGK2 Gene

Paralogs for PGK2 Gene

Selected SIMAP similar genes for PGK2 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for PGK2 Gene

genes like me logo Genes that share paralogs with PGK2: view

Variants for PGK2 Gene

Sequence variations from dbSNP and Humsavar for PGK2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs686612 -- 49,785,326(-) CAAAT(A/G)CCAGC downstream-variant-500B
rs116147250 -- 49,785,316(+) TCTTT(C/T)TCTAG downstream-variant-500B
rs144098095 -- 49,785,171(+) ATTAT(G/T)AAACC downstream-variant-500B
rs145991013 -- 49,785,265(+) GCCTT(A/C)AAAAT downstream-variant-500B
rs148694207 -- 49,785,297(+) CTTGG(G/T)TTTAA downstream-variant-500B

Relevant External Links for PGK2 Gene

HapMap Linkage Disequilibrium report
PGK2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for PGK2 Gene

Disorders for PGK2 Gene

Relevant External Links for PGK2

Genetic Association Database (GAD)
PGK2
genes like me logo Genes that share disorders with PGK2: view

No data available for UniProtKB/Swiss-Prot for PGK2 Gene

Publications for PGK2 Gene

  1. Human testis-specific PGK gene lacks introns and possesses characteristics of a processed gene. (PMID: 3453121) McCarrey J.R. … Thomas K. (Nature 1987) 2 3 4
  2. Molecular cloning and structure of an autosomal processed gene for human phosphoglycerate kinase. (PMID: 3839763) Tani K. … Yoshida A. (Gene 1985) 2 3
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Large-scale analysis of the human ubiquitin-related proteome. (PMID: 16196087) Matsumoto M. … Nakayama K.I. (Proteomics 2005) 3

Products for PGK2 Gene

  • Addgene plasmids for PGK2

Sources for PGK2 Gene

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