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Aliases for PGGHG Gene

Aliases for PGGHG Gene

  • Protein-Glucosylgalactosylhydroxylysine Glucosidase 2 3 5
  • ATHL1 3 4
  • ATH1, Acid Trehalase-Like 1 (Yeast) 2
  • Testicular Tissue Protein Li 25 3
  • Acid Trehalase-Like Protein 1 3
  • ATH1, Acid Trehalase-Like 1 3
  • EC 3.2.1.- 4

External Ids for PGGHG Gene

Previous HGNC Symbols for PGGHG Gene

  • ATHL1

Summaries for PGGHG Gene

GeneCards Summary for PGGHG Gene

PGGHG (Protein-Glucosylgalactosylhydroxylysine Glucosidase) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PGGHG Gene

Genomics for PGGHG Gene

Regulatory Elements for PGGHG Gene

Enhancers for PGGHG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F000296 1.3 Ensembl ENCODE 32.7 +11.1 11117 3.9 HDAC1 ATF1 PKNOX1 SIN3A ZNF766 ZBTB2 SMARCA4 GLIS1 IKZF1 ZBTB33 PGGHG ENSG00000255026 IFITM5 IFITM3 LOC105376503
GH11F000311 1.5 FANTOM5 ENCODE 27.1 +27.0 27037 7.0 HDGF ATF1 PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A ARID4B ETS1 YY1 ENSG00000254910 IFITM3 PGGHG PHRF1 IFITM2 SNORA52 RIC8A ENSG00000251661 ENSG00000255026 NLRP6
GH11F000290 1 ENCODE 24.4 +3.2 3199 0.7 POLR2A KDM6A PGGHG LOC105376503 IFITM5
GH11F000291 0.2 ENCODE 23.8 +3.9 3864 0.2 POLR2A POU5F1 KDM6A PGGHG LOC105376503 IFITM5
GH11F000266 1 FANTOM5 Ensembl ENCODE 17.1 -17.8 -17780 6.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A YY1 ZNF766 CBX5 ZNF143 RIC8A IFITM2 PHRF1 PSMD13 SNORA52 SIRT3 PGGHG ENSG00000255237 ENSG00000254559 ODF3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PGGHG on UCSC Golden Path with GeneCards custom track

Promoters for PGGHG Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000556762 1268 1801 NFRKB ZBTB40 ZNF335 EGR1 SMAD5 SP1 POLR2H ZFP69B SMARCA4 IKZF1

Genomic Location for PGGHG Gene

Chromosome:
11
Start:
287,832 bp from pter
End:
296,107 bp from pter
Size:
8,276 bases
Orientation:
Plus strand

Genomic View for PGGHG Gene

Genes around PGGHG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PGGHG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PGGHG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PGGHG Gene

Proteins for PGGHG Gene

  • Protein details for PGGHG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q32M88-ATHL1_HUMAN
    Recommended name:
    Acid trehalase-like protein 1
    Protein Accession:
    Q32M88
    Secondary Accessions:
    • Q658X8
    • Q8TEG9
    • Q9H635

    Protein attributes for PGGHG Gene

    Size:
    737 amino acids
    Molecular mass:
    80655 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI09258.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI09259.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB15431.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB84981.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for PGGHG Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PGGHG Gene

Post-translational modifications for PGGHG Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PGGHG Gene

Domains & Families for PGGHG Gene

Suggested Antigen Peptide Sequences for PGGHG Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q32M88

UniProtKB/Swiss-Prot:

ATHL1_HUMAN :
  • Belongs to the glycosyl hydrolase 65 family.
Family:
  • Belongs to the glycosyl hydrolase 65 family.
genes like me logo Genes that share domains with PGGHG: view

No data available for Gene Families for PGGHG Gene

Function for PGGHG Gene

Enzyme Numbers (IUBMB) for PGGHG Gene

Gene Ontology (GO) - Molecular Function for PGGHG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016787 hydrolase activity IEA,IBA --
GO:0016798 hydrolase activity, acting on glycosyl bonds IEA --
genes like me logo Genes that share ontologies with PGGHG: view
genes like me logo Genes that share phenotypes with PGGHG: view

Animal Model Products

  • Taconic Biosciences Mouse Models for PGGHG

miRNA for PGGHG Gene

miRTarBase miRNAs that target PGGHG

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PGGHG Gene

Localization for PGGHG Gene

Gene Ontology (GO) - Cellular Components for PGGHG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005618 cell wall IBA --
genes like me logo Genes that share ontologies with PGGHG: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for PGGHG Gene

Pathways & Interactions for PGGHG Gene

SuperPathways for PGGHG Gene

No Data Available

Interacting Proteins for PGGHG Gene

Gene Ontology (GO) - Biological Process for PGGHG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process IEA --
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with PGGHG: view

No data available for Pathways by source and SIGNOR curated interactions for PGGHG Gene

Transcripts for PGGHG Gene

Unigene Clusters for PGGHG Gene

ATH1, acid trehalase-like 1 (yeast):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PGGHG Gene

No ASD Table

Relevant External Links for PGGHG Gene

GeneLoc Exon Structure for
PGGHG
ECgene alternative splicing isoforms for
PGGHG

Expression for PGGHG Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of PGGHG Gene:

PGGHG

SOURCE GeneReport for Unigene cluster for PGGHG Gene:

Hs.353181
genes like me logo Genes that share expression patterns with PGGHG: view

Primer Products

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for PGGHG Gene

Orthologs for PGGHG Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PGGHG Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ATHL1 34
  • 99.08 (n)
dog
(Canis familiaris)
Mammalia ATHL1 34 35
  • 82.83 (n)
cow
(Bos Taurus)
Mammalia ATHL1 35
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Athl1 34 35
  • 81.06 (n)
Pgghg 16
rat
(Rattus norvegicus)
Mammalia Athl1 34
  • 80.72 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ATHL1 35
  • 59 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ATHL1 35
  • 46 (a)
OneToOne
chicken
(Gallus gallus)
Aves ATHL1 34 35
  • 64.92 (n)
lizard
(Anolis carolinensis)
Reptilia ATHL1 35
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia athl1 34
  • 57.5 (n)
zebrafish
(Danio rerio)
Actinopterygii athl1 34 35
  • 55.52 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008548 34
  • 49.23 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG16965 34 35
  • 46.54 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ATH1 35
  • 12 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 35 (a)
OneToOne
Species where no ortholog for PGGHG was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PGGHG Gene

ENSEMBL:
Gene Tree for PGGHG (if available)
TreeFam:
Gene Tree for PGGHG (if available)

Paralogs for PGGHG Gene

No data available for Paralogs for PGGHG Gene

Variants for PGGHG Gene

Sequence variations from dbSNP and Humsavar for PGGHG Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1060814 -- 295,445(+) GGGCG(A/C)GACCC nc-transcript-variant, utr-variant-3-prime
rs1060819 -- 295,527(+) AGCCT(C/T)TGTCT nc-transcript-variant, utr-variant-3-prime
rs1060831 -- 295,631(+) CCTGC(A/C)CCGCT nc-transcript-variant, utr-variant-3-prime
rs10751645 -- 288,003(+) GGGGG(G/T)TCTGT intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs10751646 -- 288,022(+) AAGGC(A/G)TAAGT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for PGGHG Gene

Variant ID Type Subtype PubMed ID
dgv1012n100 CNV gain 25217958
dgv1505n54 CNV gain 21841781
esv3891905 CNV gain 25118596
esv989344 CNV gain 20482838
nsv1052484 CNV gain 25217958
nsv1070914 CNV deletion 25765185
nsv1118196 CNV deletion 24896259
nsv516809 CNV loss 19592680
nsv527327 CNV loss 19592680
nsv552765 CNV gain 21841781
nsv7212 OTHER inversion 18451855

Variation tolerance for PGGHG Gene

Residual Variation Intolerance Score: 35.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.02; 68.51% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PGGHG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PGGHG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PGGHG Gene

Disorders for PGGHG Gene

Relevant External Links for PGGHG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PGGHG
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PGGHG

No disorders were found for PGGHG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PGGHG Gene

Publications for PGGHG Gene

  1. Catalytic site of human protein-glucosylgalactosylhydroxylysine glucosidase: Three crucial carboxyl residues were determined by cloning and site-directed mutagenesis. (PMID: 26682924) Hamazaki H. … Hamazaki M.H. (Biochem. Biophys. Res. Commun. 2016) 2 3 64
  2. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 4 64
  3. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PMID: 22990118) Woods N.T. … Monteiro A.N. (Sci Signal 2012) 3 64
  4. Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging. (PMID: 19834535) Wheeler H.E. … Kim S.K. (PLoS Genet. 2009) 3 64
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64

Products for PGGHG Gene

Sources for PGGHG Gene

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