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Aliases for PEX12 Gene

Aliases for PEX12 Gene

  • Peroxisomal Biogenesis Factor 12 2 3 5
  • Peroxisome Assembly Factor 3 3 4
  • PAF-3 3 4
  • Peroxisome Assembly Protein 12 3
  • Peroxin 12 3
  • Peroxin-12 4
  • PBD3A 3
  • PAF3 4

External Ids for PEX12 Gene

Previous GeneCards Identifiers for PEX12 Gene

  • GC17M033671
  • GC17M035937
  • GC17M033750
  • GC17M034047
  • GC17M030925
  • GC17M033897
  • GC17M030086

Summaries for PEX12 Gene

Entrez Gene Summary for PEX12 Gene

  • This gene belongs to the peroxin-12 family. Peroxins (PEXs) are proteins that are essential for the assembly of functional peroxisomes. The peroxisome biogenesis disorders (PBDs) are a group of genetically heterogeneous autosomal recessive, lethal diseases characterized by multiple defects in peroxisome function. The peroxisomal biogenesis disorders are a heterogeneous group with at least 14 complementation groups and with more than 1 phenotype being observed in cases falling into particular complementation groups. Although the clinical features of PBD patients vary, cells from all PBD patients exhibit a defect in the import of one or more classes of peroxisomal matrix proteins into the organelle. Defects in this gene are a cause of Zellweger syndrome (ZWS). [provided by RefSeq, Oct 2008]

GeneCards Summary for PEX12 Gene

PEX12 (Peroxisomal Biogenesis Factor 12) is a Protein Coding gene. Diseases associated with PEX12 include Peroxisome Biogenesis Disorder 3B and Peroxisome Biogenesis Disorder 3A. Among its related pathways are Peroxisome. GO annotations related to this gene include protein C-terminus binding.

UniProtKB/Swiss-Prot for PEX12 Gene

  • Required for protein import into peroxisomes.

Gene Wiki entry for PEX12 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PEX12 Gene

Genomics for PEX12 Gene

Regulatory Elements for PEX12 Gene

Enhancers for PEX12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F035533 1.7 FANTOM5 Ensembl ENCODE 12 +41.2 41191 9.0 HDGF PKNOX1 ATF1 WRNIP1 ZNF2 YY1 ZNF143 KLF13 JUNB REST AP2B1 SLFN12L CCL5 PEX12 SLFN5 TAF5LP1 GAS2L2 SLFN11 CCL14 RFFL
GH17F035543 0.7 ENCODE 10.9 +35.7 35667 0.2 JUN PEX12 ENSG00000267035 ENSG00000267359
GH17F035605 1 ENCODE 10.8 -27.2 -27168 1.0 HDGF BCOR SMARCA5 ZMYM3 ZNF623 POLR2A HDAC2 FOXK2 KDM1A SUPT5H PEX12 C17orf50 AP2B1 LOC100420062 GC17M035631
GH17F035613 0.2 ENCODE 10.6 -34.3 -34264 0.1 CTCF ZNF654 SMC3 ZZZ3 RAD21 C17orf50 TAF15 RASL10B PEX12 MMP28 LOC100420062 GC17M035631
GH17F035546 0.5 Ensembl 10.4 +32.2 32163 0.6 HDGF PKNOX1 TBL1XR1 ARNT NFXL1 CREM SMARCA5 REST MBD2 SMARCA4 AP2B1 PEX12 SLFN13 NLE1 ENSG00000267035 ENSG00000267359
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PEX12 on UCSC Golden Path with GeneCards custom track

Promoters for PEX12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001344810 263 2001 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766

Genomic Location for PEX12 Gene

Chromosome:
17
Start:
35,574,795 bp from pter
End:
35,578,863 bp from pter
Size:
4,069 bases
Orientation:
Minus strand

Genomic View for PEX12 Gene

Genes around PEX12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PEX12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PEX12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PEX12 Gene

Proteins for PEX12 Gene

  • Protein details for PEX12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00623-PEX12_HUMAN
    Recommended name:
    Peroxisome assembly protein 12
    Protein Accession:
    O00623
    Secondary Accessions:
    • B2R6M2

    Protein attributes for PEX12 Gene

    Size:
    359 amino acids
    Molecular mass:
    40797 Da
    Quaternary structure:
    • Interacts with PEX5 and PEX10. Interacts with PEX19 via its cytoplasmic domain.

neXtProt entry for PEX12 Gene

Post-translational modifications for PEX12 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PEX12 Gene

No data available for DME Specific Peptides for PEX12 Gene

Domains & Families for PEX12 Gene

Gene Families for PEX12 Gene

Protein Domains for PEX12 Gene

Suggested Antigen Peptide Sequences for PEX12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O00623

UniProtKB/Swiss-Prot:

PEX12_HUMAN :
  • Belongs to the pex2/pex10/pex12 family.
  • Contains 1 RING-type zinc finger.
Family:
  • Belongs to the pex2/pex10/pex12 family.
Similarity:
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with PEX12: view

Function for PEX12 Gene

Molecular function for PEX12 Gene

UniProtKB/Swiss-Prot Function:
Required for protein import into peroxisomes.

Gene Ontology (GO) - Molecular Function for PEX12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004842 ubiquitin-protein transferase activity IBA --
GO:0005515 protein binding IPI 10562279
GO:0008022 protein C-terminus binding IEA,IPI 10562279
GO:0008270 zinc ion binding IEA,IMP 10562279
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with PEX12: view
genes like me logo Genes that share phenotypes with PEX12: view

Human Phenotype Ontology for PEX12 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

miRNA for PEX12 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for PEX12 Gene

Localization for PEX12 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PEX12 Gene

Peroxisome membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PEX12 Gene COMPARTMENTS Subcellular localization image for PEX12 gene
Compartment Confidence
peroxisome 5
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for PEX12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005777 peroxisome IEA,IDA 9922452
GO:0005778 peroxisomal membrane IEA,IDA 21525035
GO:0005779 integral component of peroxisomal membrane IEA,TAS 10562279
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with PEX12: view

Pathways & Interactions for PEX12 Gene

SuperPathways for PEX12 Gene

SuperPathway Contained pathways
1 Peroxisome
genes like me logo Genes that share pathways with PEX12: view

Pathways by source for PEX12 Gene

1 KEGG pathway for PEX12 Gene

Gene Ontology (GO) - Biological Process for PEX12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006513 protein monoubiquitination IBA --
GO:0006625 protein targeting to peroxisome IEA,NAS 12096124
GO:0007031 peroxisome organization IMP 17534573
GO:0016558 protein import into peroxisome matrix NAS 12456682
genes like me logo Genes that share ontologies with PEX12: view

No data available for SIGNOR curated interactions for PEX12 Gene

Drugs & Compounds for PEX12 Gene

(1) Drugs for PEX12 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with PEX12: view

Transcripts for PEX12 Gene

Unigene Clusters for PEX12 Gene

Peroxisomal biogenesis factor 12:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PEX12 Gene

No ASD Table

Relevant External Links for PEX12 Gene

GeneLoc Exon Structure for
PEX12
ECgene alternative splicing isoforms for
PEX12

Expression for PEX12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PEX12 Gene

Protein differential expression in normal tissues from HIPED for PEX12 Gene

This gene is overexpressed in Testis (32.6), Frontal cortex (9.3), Fetal testis (7.7), Retina (7.1), and Liver (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PEX12 Gene



Protein tissue co-expression partners for PEX12 Gene

NURSA nuclear receptor signaling pathways regulating expression of PEX12 Gene:

PEX12

SOURCE GeneReport for Unigene cluster for PEX12 Gene:

Hs.591190
genes like me logo Genes that share expression patterns with PEX12: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PEX12 Gene

Orthologs for PEX12 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PEX12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PEX12 34 35
  • 99.63 (n)
dog
(Canis familiaris)
Mammalia PEX12 34 35
  • 92.01 (n)
cow
(Bos Taurus)
Mammalia PEX12 34 35
  • 91.74 (n)
rat
(Rattus norvegicus)
Mammalia LOC100909787 34
  • 87.28 (n)
mouse
(Mus musculus)
Mammalia Pex12 34 16 35
  • 87 (n)
oppossum
(Monodelphis domestica)
Mammalia PEX12 35
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PEX12 35
  • 57 (a)
OneToOne
chicken
(Gallus gallus)
Aves PEX12 34 35
  • 72.19 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia pex12 34
  • 66.29 (n)
Str.18184 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.15035 34
zebrafish
(Danio rerio)
Actinopterygii pex12 34 35
  • 61.35 (n)
zgc56182 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010497 34
  • 47.21 (n)
fruit fly
(Drosophila melanogaster)
Insecta Pex12 34 35
  • 44.89 (n)
worm
(Caenorhabditis elegans)
Secernentea prx-12 34 35
  • 48.77 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PEX12 35 37
  • 21 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons PEX12 34
  • 44.71 (n)
rice
(Oryza sativa)
Liliopsida Os10g0467200 34
  • 45.1 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU05245 34
  • 43.78 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAPB17E12.03 34
  • 40.72 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 34 (a)
OneToOne
Species where no ortholog for PEX12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PEX12 Gene

ENSEMBL:
Gene Tree for PEX12 (if available)
TreeFam:
Gene Tree for PEX12 (if available)

Paralogs for PEX12 Gene

Pseudogenes.org Pseudogenes for PEX12 Gene

genes like me logo Genes that share paralogs with PEX12: view

No data available for Paralogs for PEX12 Gene

Variants for PEX12 Gene

Sequence variations from dbSNP and Humsavar for PEX12 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs147530802 Peroxisome biogenesis disorder complementation group 3 (PBD-CG3) [MIM:614859], Benign 35,577,920(+) GCGGG(A/T)CTCAC reference, missense
rs28936697 Peroxisome biogenesis disorder 3B (PBD3B) [MIM:266510], Pathogenic 35,575,903(-) CACCT(C/T)TGGCT reference, missense
rs104894616 Pathogenic 35,576,171(-) GTGAG(A/T)AGATA reference, stop-gained
rs28936698 Pathogenic 35,577,445(-) AAGAG(A/T)ATTGT reference, missense
rs398123301 Pathogenic 35,575,973(-) CCCCT(-/CT)TACCC reference, frameshift-variant

Structural Variations from Database of Genomic Variants (DGV) for PEX12 Gene

Variant ID Type Subtype PubMed ID
esv3892999 CNV loss 25118596
nsv2038 CNV insertion 18451855
nsv953880 CNV duplication 24416366

Variation tolerance for PEX12 Gene

Residual Variation Intolerance Score: 64.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.08; 50.77% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PEX12 Gene

Human Gene Mutation Database (HGMD)
PEX12
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PEX12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PEX12 Gene

Disorders for PEX12 Gene

MalaCards: The human disease database

(9) MalaCards diseases for PEX12 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
peroxisome biogenesis disorder 3b
  • pbd3b
peroxisome biogenesis disorder 3a
  • pbd3a
peroxisome biogenesis disorder 1b
  • infantile refsum disease
neonatal adrenoleukodystrophy
  • adrenoleukodystrophy autosomal neonatal form
peroxisome biogenesis disorders, zellweger syndrome spectrum
  • peroxisome biogenesis disorder-zellweger syndrome spectrum
- elite association - COSMIC cancer census association via MalaCards
Search PEX12 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

PEX12_HUMAN
  • Peroxisome biogenesis disorder 3A (PBD3A) [MIM:614859]: A fatal peroxisome biogenesis disorder belonging to the Zellweger disease spectrum and clinically characterized by severe neurologic dysfunction with profound psychomotor retardation, severe hypotonia and neonatal seizures, craniofacial abnormalities, liver dysfunction, and biochemically by the absence of peroxisomes. Additional features include cardiovascular and skeletal defects, renal cysts, ocular abnormalities, and hearing impairment. Most severely affected individuals with the classic form of the disease (classic Zellweger syndrome) die within the first year of life. {ECO:0000269 PubMed:9090384}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Peroxisome biogenesis disorder 3B (PBD3B) [MIM:266510]: A peroxisome biogenesis disorder that includes neonatal adrenoleukodystrophy (NALD) and infantile Refsum disease (IRD), two milder manifestations of the Zellweger disease spectrum. The clinical course of patients with the NALD and IRD presentation is variable and may include developmental delay, hypotonia, liver dysfunction, sensorineural hearing loss, retinal dystrophy and vision impairment. Children with the NALD presentation may reach their teens, while patients with the IRD presentation may reach adulthood. The clinical conditions are often slowly progressive in particular with respect to loss of hearing and vision. The biochemical abnormalities include accumulation of phytanic acid, very long chain fatty acids (VLCFA), di- and trihydroxycholestanoic acid and pipecolic acid. Note=The disease is caused by mutations affecting the gene represented in this entry. {ECO:0000269 PubMed:10562279, ECO:0000269 PubMed:19105186}.
  • Peroxisome biogenesis disorder complementation group 3 (PBD-CG3) [MIM:614859]: A peroxisomal disorder arising from a failure of protein import into the peroxisomal membrane or matrix. The peroxisome biogenesis disorders (PBD group) are genetically heterogeneous with at least 14 distinct genetic groups as concluded from complementation studies. Include disorders are: Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). ZWS, NALD and IRD are distinct from RCDP and constitute a clinical continuum of overlapping phenotypes known as the Zellweger spectrum (PBD-ZSS). {ECO:0000269 PubMed:19105186}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for PEX12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PEX12
genes like me logo Genes that share disorders with PEX12: view

No data available for Genatlas for PEX12 Gene

Publications for PEX12 Gene

  1. Isolation of the human PEX12 gene, mutated in group 3 of the peroxisome biogenesis disorders. (PMID: 9090384) Chang C.-C. … Gould S.J. (Nat. Genet. 1997) 2 3 4 22 64
  2. Identification of novel mutations and sequence variation in the Zellweger syndrome spectrum of peroxisome biogenesis disorders. (PMID: 19105186) Yik W.Y. … Hacia J.G. (Hum. Mutat. 2009) 3 4 22 64
  3. PEX12 interacts with PEX5 and PEX10 and acts downstream of receptor docking in peroxisomal matrix protein import. (PMID: 10562279) Chang C.C. … Gould S.J. (J. Cell Biol. 1999) 3 4 22 64
  4. PEX12, the pathogenic gene of group III Zellweger syndrome: cDNA cloning by functional complementation on a CHO cell mutant, patient analysis, and characterization of PEX12p. (PMID: 9632816) Okumoto K. … Fujiki Y. (Mol. Cell. Biol. 1998) 3 4 22 64
  5. A novel PEX12 mutation identified as the cause of a peroxisomal biogenesis disorder with mild clinical phenotype, mild biochemical abnormalities in fibroblasts and a mosaic catalase immunofluorescence pattern, even at 40 degrees C. (PMID: 17534573) Zeharia A. … Korman S.H. (J. Hum. Genet. 2007) 3 22 64

Products for PEX12 Gene

Sources for PEX12 Gene

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