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Aliases for PEX1 Gene

Aliases for PEX1 Gene

  • Peroxisomal Biogenesis Factor 1 2 3
  • Peroxisome Biogenesis Disorder Protein 1 3 4
  • Peroxisome Biogenesis Factor 1 2 3
  • Zellweger Syndrome 2 3
  • Peroxin-1 3 4
  • PBD1A 3 6
  • PBD1B 3 6
  • ZWS1 3 6
  • Zellweger Syndrome 1 2
  • ZWS 3

External Ids for PEX1 Gene

Previous HGNC Symbols for PEX1 Gene

  • ZWS1
  • ZWS

Previous GeneCards Identifiers for PEX1 Gene

  • GC07M090651
  • GC07M091714
  • GC07M091728
  • GC07M091760
  • GC07M091954
  • GC07M092116
  • GC07M086725

Summaries for PEX1 Gene

Entrez Gene Summary for PEX1 Gene

  • This gene encodes a member of the AAA ATPase family, a large group of ATPases associated with diverse cellular activities. This protein is cytoplasmic but is often anchored to a peroxisomal membrane where it forms a heteromeric complex and plays a role in the import of proteins into peroxisomes and peroxisome biogenesis. Mutations in this gene have been associated with complementation group 1 peroxisomal disorders such as neonatal adrenoleukodystrophy, infantile Refsum disease, and Zellweger syndrome. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2013]

GeneCards Summary for PEX1 Gene

PEX1 (Peroxisomal Biogenesis Factor 1) is a Protein Coding gene. Diseases associated with PEX1 include peroxisome biogenesis disorder 1a and peroxisome biogenesis disorder 1b. Among its related pathways are Peroxisome. GO annotations related to this gene include protein C-terminus binding and ATPase activity, coupled.

UniProtKB/Swiss-Prot for PEX1 Gene

  • Required for stability of PEX5 and protein import into the peroxisome matrix. Anchored by PEX26 to peroxisome membranes, possibly to form heteromeric AAA ATPase complexes required for the import of proteins into peroxisomes

Gene Wiki entry for PEX1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PEX1 Gene

Genomics for PEX1 Gene

Regulatory Elements for PEX1 Gene

Genomic Location for PEX1 Gene

Start:
92,487,020 bp from pter
End:
92,528,531 bp from pter
Size:
41,512 bases
Orientation:
Minus strand

Genomic View for PEX1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PEX1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PEX1 Gene

Proteins for PEX1 Gene

  • Protein details for PEX1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43933-PEX1_HUMAN
    Recommended name:
    Peroxisome biogenesis factor 1
    Protein Accession:
    O43933
    Secondary Accessions:
    • A4D1G3
    • A8KA90
    • B4DIM7
    • E9PE75
    • Q96S71
    • Q96S72
    • Q96S73
    • Q99994

    Protein attributes for PEX1 Gene

    Size:
    1283 amino acids
    Molecular mass:
    142867 Da
    Quaternary structure:
    • Interacts directly with PEX6. Interacts indirectly with PEX26, via its interaction with PEX6.
    SequenceCaution:
    • Sequence=AAB46346.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for PEX1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PEX1 Gene

Proteomics data for PEX1 Gene at MOPED

Post-translational modifications for PEX1 Gene

  • Ubiquitination at Lys806, Lys816, Lys833, Lys887, and Lys1224
  • Modification sites at PhosphoSitePlus

Other Protein References for PEX1 Gene

No data available for DME Specific Peptides for PEX1 Gene

Domains for PEX1 Gene

Gene Families for PEX1 Gene

HGNC:
  • AATP :ATPases / AAA-type

Suggested Antigen Peptide Sequences for PEX1 Gene

Graphical View of Domain Structure for InterPro Entry

O43933

UniProtKB/Swiss-Prot:

PEX1_HUMAN :
  • O43933
Family:
  • Belongs to the AAA ATPase family.
genes like me logo Genes that share domains with PEX1: view

Function for PEX1 Gene

Molecular function for PEX1 Gene

GENATLAS Biochemistry: peroxin 1,peroxisome biogenesis factor 1,located mainly in the cytoplasm,required for the stability of PEX5 (PXR1) homolog to S cerevisiae PEX1
UniProtKB/Swiss-Prot Function: Required for stability of PEX5 and protein import into the peroxisome matrix. Anchored by PEX26 to peroxisome membranes, possibly to form heteromeric AAA ATPase complexes required for the import of proteins into peroxisomes

Gene Ontology (GO) - Molecular Function for PEX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16257970
GO:0005524 ATP binding IMP 16854980
GO:0008022 protein C-terminus binding IPI 16854980
GO:0009378 four-way junction helicase activity --
GO:0032403 protein complex binding IDA 16854980
genes like me logo Genes that share ontologies with PEX1: view

Phenotypes for PEX1 Gene

GenomeRNAi human phenotypes for PEX1:
genes like me logo Genes that share phenotypes with PEX1: view

Animal Model Products

miRNA for PEX1 Gene

miRTarBase miRNAs that target PEX1

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for PEX1 Gene

Localization for PEX1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PEX1 Gene

Cytoplasm. Peroxisome membrane. Note=Associated with peroxisomal membranes.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PEX1 Gene COMPARTMENTS Subcellular localization image for PEX1 gene
Compartment Confidence
cytosol 5
peroxisome 5
nucleus 4
endoplasmic reticulum 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for PEX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 9588209
GO:0005777 peroxisome IDA 16854980
GO:0005778 peroxisomal membrane IDA 11439091
GO:0005829 cytosol IDA 16854980
GO:0043231 intracellular membrane-bounded organelle IDA --
genes like me logo Genes that share ontologies with PEX1: view

Pathways for PEX1 Gene

SuperPathways for PEX1 Gene

Superpath Contained pathways
1 Peroxisome
genes like me logo Genes that share pathways with PEX1: view

Pathways by source for PEX1 Gene

1 KEGG pathway for PEX1 Gene

Gene Ontology (GO) - Biological Process for PEX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006200 obsolete ATP catabolic process --
GO:0006281 DNA repair --
GO:0006310 DNA recombination --
GO:0006625 protein targeting to peroxisome IMP 11439091
GO:0007031 peroxisome organization IMP 11439091
genes like me logo Genes that share ontologies with PEX1: view

Compounds for PEX1 Gene

(1) Novoseek inferred chemical compound relationships for PEX1 Gene

Compound -log(P) Hits PubMed IDs
lipid 0 3
genes like me logo Genes that share compounds with PEX1: view

Transcripts for PEX1 Gene

Unigene Clusters for PEX1 Gene

Peroxisomal biogenesis factor 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PEX1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PEX1 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17a · 17b ^
SP1:
SP2:
SP3:
SP4: -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

ExUns: 18 ^ 19a · 19b · 19c ^ 20a · 20b · 20c ^ 21 ^ 22a · 22b ^ 23a · 23b ^ 24a · 24b · 24c ^ 25
SP1:
SP2:
SP3:
SP4:
SP5:
SP6: - -
SP7:
SP8:
SP9: -
SP10: -
SP11:
SP12:

Relevant External Links for PEX1 Gene

GeneLoc Exon Structure for
PEX1
ECgene alternative splicing isoforms for
PEX1

Expression for PEX1 Gene

mRNA expression in normal human tissues for PEX1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PEX1 Gene

SOURCE GeneReport for Unigene cluster for PEX1 Gene Hs.164682

genes like me logo Genes that share expressions with PEX1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PEX1 Gene

Orthologs for PEX1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PEX1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PEX1 35
  • 99.56 (n)
  • 99.69 (a)
PEX1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PEX1 35
  • 87.3 (n)
  • 87.43 (a)
PEX1 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PEX1 35
  • 88.11 (n)
  • 87.29 (a)
PEX1 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pex1 35
  • 82.93 (n)
  • 81.72 (a)
Pex1 16
Pex1 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PEX1 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PEX1 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pex1 35
  • 82.93 (n)
  • 81.73 (a)
chicken
(Gallus gallus)
Aves PEX1 35
  • 68.83 (n)
  • 63.32 (a)
PEX1 36
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PEX1 36
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia pex1 35
  • 60.34 (n)
  • 52.44 (a)
Str.19191 35
zebrafish
(Danio rerio)
Actinopterygii pex1 35
  • 55.89 (n)
  • 51.03 (a)
pex1 36
  • 49 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Pex1 36
  • 28 (a)
OneToOne
l(3)70Da 37
  • 40 (a)
worm
(Caenorhabditis elegans)
Secernentea prx-1 36
  • 27 (a)
OneToOne
prx-1 37
  • 36 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PEX1 36
  • 30 (a)
OneToOne
PEX1 38
Species with no ortholog for PEX1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PEX1 Gene

ENSEMBL:
Gene Tree for PEX1 (if available)
TreeFam:
Gene Tree for PEX1 (if available)

Paralogs for PEX1 Gene

Selected SIMAP similar genes for PEX1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with PEX1: view

No data available for Paralogs for PEX1 Gene

Variants for PEX1 Gene

Sequence variations from dbSNP and Humsavar for PEX1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs38805 -- 92,510,160(+) aaaGA(C/T)GACTC intron-variant
rs38806 -- 92,510,477(+) aaaaa(A/T)aataa intron-variant
rs38807 -- 92,513,693(+) ATGGC(G/T)AACAT intron-variant
rs38808 -- 92,516,636(+) TTTAG(C/G)TTCCA intron-variant
rs38809 Benign 92,518,270(+) ACAGA(C/T)GAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PEX1 Gene

Variant ID Type Subtype PubMed ID
esv2657169 CNV Deletion 23128226
nsv5841 CNV Insertion 18451855

Relevant External Links for PEX1 Gene

HapMap Linkage Disequilibrium report
PEX1
Human Gene Mutation Database (HGMD)
PEX1
Locus Specific Mutation Databases (LSDB)
PEX1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PEX1 Gene

Disorders for PEX1 Gene

(2) OMIM Diseases for PEX1 Gene (602136)

UniProtKB/Swiss-Prot

PEX1_HUMAN
  • Peroxisome biogenesis disorder complementation group 1 (PBD-CG1) [MIM:214100]: A peroxisomal disorder arising from a failure of protein import into the peroxisomal membrane or matrix. The peroxisome biogenesis disorders (PBD group) are genetically heterogeneous with at least 14 distinct genetic groups as concluded from complementation studies. Include disorders are: Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). ZWS, NALD and IRD are distinct from RCDP and constitute a clinical continuum of overlapping phenotypes known as the Zellweger spectrum (PBD-ZSS). {ECO:0000269 PubMed:19105186}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Peroxisome biogenesis disorder 1A (PBD1A) [MIM:214100]: A fatal peroxisome biogenesis disorder belonging to the Zellweger disease spectrum. PBD1A is an autosomal recessive systemic disorder characterized clinically by severe neurologic dysfunction with profound psychomotor retardation, severe hypotonia and neonatal seizures, craniofacial abnormalities, liver dysfunction, and biochemically by the absence of peroxisomes. Additional features include cardiovascular and skeletal defects, renal cysts, ocular abnormalities, and hearing impairment. Most severely affected individuals with the classic form of the disease (classic Zellweger syndrome) die within the first year of life. {ECO:0000269 PubMed:9398847, ECO:0000269 PubMed:9398848, ECO:0000269 PubMed:9539740}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Peroxisome biogenesis disorder 1B (PBD1B) [MIM:601539]: A peroxisome biogenesis disorder that includes neonatal adrenoleukodystrophy (NALD) and infantile Refsum disease (IRD), two milder manifestations of the Zellweger disease spectrum. The clinical course of patients with the NALD and IRD presentation is variable and may include developmental delay, hypotonia, liver dysfunction, sensorineural hearing loss, retinal dystrophy and vision impairment. Children with the NALD presentation may reach their teens, while patients with the IRD presentation may reach adulthood. The clinical conditions are often slowly progressive in particular with respect to loss of hearing and vision. The biochemical abnormalities include accumulation of phytanic acid, very long chain fatty acids (VLCFA), di- and trihydroxycholestanoic acid and pipecolic acid. {ECO:0000269 PubMed:11439091, ECO:0000269 PubMed:9398847, ECO:0000269 PubMed:9539740}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(3) University of Copenhagen DISEASES for PEX1 Gene

(5) Novoseek inferred disease relationships for PEX1 Gene

Disease -log(P) Hits PubMed IDs
peroxisome biogenesis disorders 98.3 8
refsum disease infantile 97.1 1
adrenoleukodystrophy neonatal 96.5 1
zellweger syndrome 96.1 11
peroxisomal disorders 77.8 1

Relevant External Links for PEX1

GeneTests
PEX1
GeneReviews
PEX1
Genetic Association Database (GAD)
PEX1
Human Genome Epidemiology (HuGE) Navigator
PEX1
genes like me logo Genes that share disorders with PEX1: view

Publications for PEX1 Gene

  1. Human PEX1 is mutated in complementation group 1 of the peroxisome biogenesis disorders. (PMID: 9398848) Portsteffen H. … Dodt G. (Nat. Genet. 1997) 2 3 4 23
  2. Human PEX1 cloned by functional complementation on a CHO cell mutant is responsible for peroxisome-deficient Zellweger syndrome of complementation group I. (PMID: 9539740) Tamura S. … Fujiki Y. (Proc. Natl. Acad. Sci. U.S.A. 1998) 3 4 23
  3. Identification of novel mutations and sequence variation in the Zellweger syndrome spectrum of peroxisome biogenesis disorders. (PMID: 19105186) Yik W.Y. … Hacia J.G. (Hum. Mutat. 2009) 3 4 23
  4. Phenotype-genotype relationships in peroxisome biogenesis disorders of PEX1-defective complementation group 1 are defined by Pex1p-Pex6p interaction. (PMID: 11439091) Tamura S. … Fujiki Y. (Biochem. J. 2001) 3 4 23
  5. Mutations in PEX1 are the most common cause of peroxisome biogenesis disorders. (PMID: 9398847) Reuber B.E. … Gould S.J. (Nat. Genet. 1997) 3 4 23

Products for PEX1 Gene

Sources for PEX1 Gene

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