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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

PECAM1 Gene

protein-coding   GIFtS: 63
GCID: GC17M062399

platelet/endothelial cell adhesion molecule 1

(Previous name: platelet/endothelial cell adhesion molecule )
 Explore 147 diseases affiliated with
PECAM1 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for PECAM1    

Aliases
for PECAM1 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 2

Aliases
Platelet/Endothelial Cell Adhesion Molecule 11 2     Platelet/Endothelial Cell Adhesion Molecule1
CD311 2     CD31/EndoCAM2
GPIIA'2 3     EndoCAM3
PECA12 3     Platelet Endothelial Cell Adhesion Molecule2
PECAM-12 3     EndoCAM3
CD31 Antigen2 3     

External Ids:    HGNC: 88231   Entrez Gene: 51752   OMIM: 1734455   UniProtKB: P162843   
ORGUL members:         
NONCODE:n387037    

Export aliases for PECAM1 gene to outside databases

Previous GC identifers: GC17U990071 GC17M064827 GC17M062740 GC17M062873 GC17M059754


Summaries
for PECAM1 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for PECAM1:
The protein encoded by this gene is found on the surface of platelets, monocytes, neutrophils, and some types of
T-cells, and makes up a large portion of endothelial cell intercellular junctions. The encoded protein is a member of
the immunoglobulin superfamily and is likely involved in leukocyte migration, angiogenesis, and integrin activation.
(provided by RefSeq, May 2010)

UniProtKB/Swiss-Prot: PECA1_HUMAN, P16284
Function: Induces susceptibility to atherosclerosis (By similarity). Cell adhesion molecule which is required for
leukocyte transendothelial migration (TEM) under most inflammatory conditions. Tyr-690 plays a critical role in TEM
and is required for efficient trafficking of PECAM1 to and from the lateral border recycling compartment (LBRC) and is
also essential for the LBRC membrane to be targeted around migrating leukocytes. Prevents phagocyte ingestion of
closely apposed viable cells by transmitting 'detachment' signals, and changes function on apoptosis, promoting
tethering of dying cells to phagocytes (the encounter of a viable cell with a phagocyte via the homophilic interaction
of PECAM1 on both cell surfaces leads to the viable cell's active repulsion from the phagocyte. During apoptosis, the
inside-out signaling of PECAM1 is somehow disabled so that the apoptotic cell does not actively reject the phagocyte
anymore. The lack of this repulsion signal together with the interaction of the eat-me signals and their respective
receptors causes the attachment of the apoptotic cell to the phagocyte, thus triggering the process of engulfment).
Isoform Delta15 is unable to protect against apoptosis. Modulates BDKRB2 activation. Regulates bradykinin- and
hyperosmotic shock-induced ERK1/2 activation in human umbilical cord vein cells (HUVEC)

Gene Wiki entry for PECAM1 (CD31)


Genomic Views
for PECAM1 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.1  NT_010783.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the PECAM1 gene promoter:
         STAT1   FOXO3   HNF-3beta   FOXO3b   NRF-2   FOXO4   COMP1   FOXO1a   FOXO3a   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: PECAM1 promoter sequence
   Search SABiosciences Chromatin IP Primers for PECAM1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PECAM1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q23.3   HGNC cytogenetic band: 17q23.3

PECAM1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PECAM1 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M062399:  view genomic region     (about GC identifiers)

Start:
 62,399,863 bp from pter      End:
 62,401,205 bp from pter
Size:
 1,343 bases      Orientation:
 minus strand

1 alternative location:
Chr17-,PATCHES 62,359,242-62,427,617     

Proteins
for PECAM1 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: PECA1_HUMAN, P16284 (See protein sequence)
Recommended Name: Platelet endothelial cell adhesion molecule precursor  
Size: 738 amino acids; 82536 Da
Subunit: Interacts with PTPN11; Tyr-713 is critical for PTPN11 recruitment. Forms a complex with BDKRB2 and GNAQ.
Interacts with BDKRB2 and GNAQ
Subcellular location: Isoform Long: Membrane; Single-pass type I membrane protein. Cell junction. Note=Localizes to the
lateral border recycling compartment (LBRC) and recycles from the LBRC to the junction in resting endothelial cells
Subcellular location: Isoform Delta15: Cell junction. Note=Localizes to the lateral border recycling compartment (LBRC)
and recycles from the LBRC to the junction in resting endothelial cells
1 PDB 3D structure from and Proteopedia for PECAM1:
2KY5 (3D)    
Secondary accessions: Q6LDA9 Q8TBH1 Q96RF5 Q96RF6 Q9NP65 Q9NPB7 Q9NPG9 Q9NQS9 Q9NQT0 Q9NQT1 Q9NQT2
Alternative splicing: 6 isoforms:  P16284-1   P16284-2   P16284-3   P16284-4   P16284-5   P16284-6   

Explore the universe of human proteins at neXtProt for PECAM1: NX_P16284

Post-translational modifications:

  • Phosphorylated on Ser and Tyr residues after cellular activation. Phosphorylated on tyrosine residues by FER and FES in
    • response to FCER1 activation (By similarity). In endothelial cells Fyn mediates mechanical-force (stretch or pull)
    induced tyrosine phosphorylation1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P16284

    • PECAM1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_000433.4  Reactome Protein details: P16284
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    R&D Systems Recombinant & Natural Proteins for PECAM1 (CD31/PECAM-1)
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    OriGene Purified Protein: PECAM1
    OriGene Protein Over-expression Lysate: PECAM1
    OriGene Custom Protein Services for PECAM1 
    GenScript Custom Purified and Recombinant Proteins Services for PECAM1
    Novus Biologicals PECAM1 Proteins
    Novus Biologicals PECAM1 Lysates
    Sino Biological Recombinant Protein for PECAM1
    ProSpec Recombinant Protein for PECAM1
    Uscn Proteins for PECAM1

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615extracellular space IDA9290466
    GO:0005886plasma membrane TAS--
    GO:0016021integral to membrane IEA--
    GO:0030054cell junction IEA--
    GO:0031092platelet alpha granule membrane TAS--


    PECAM1 for ontologies           About GeneDecksing



    PECAM1 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of PECAM1
    R&D Systems Antibodies for PECAM1 (CD31/PECAM-1)
    Cell Signaling Technology (CST) Antibodies for PECAM1  (PECAM-1)
    OriGene Antibodies (see all 28): PECAM1
    OriGene Custom Antibody Services for PECAM1 
    GenScript Custom Superior Antibodies Services for PECAM1
    Novus Biologicals PECAM1 Antibodies
    Abcam antibodies for PECAM1 
    Uscn Antibodies for PECAM1
    ThermoFisher Antibody for PECAM1

    Assay Products for PECAM1: 
    Browse Kits and Assays available from EMD Millipore
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    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for PECAM1

    Protein Domains /
    Families
    for PECAM1 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    PECAM1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR013783 Ig-like_fold
     IPR007110 Ig-like_dom
     IPR003599 Ig_sub

    Graphical View of Domain Structure for InterPro Entry P16284

    ProtoNet protein and cluster: P16284

    1 Blocks protein family: IPB003599 Immunoglobulin subtype

    UniProtKB/Swiss-Prot: PECA1_HUMAN, P16284
    Domain: The Ig-like C2-type domains 2 and 3 contribute to formation of the complex with BDKRB2 and in regulation of its
    activity
    Similarity: Contains 6 Ig-like C2-type (immunoglobulin-like) domains


    Function
    for PECAM1 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: PECA1_HUMAN, P16284
    Function: Induces susceptibility to atherosclerosis (By similarity). Cell adhesion molecule which is required for
    leukocyte transendothelial migration (TEM) under most inflammatory conditions. Tyr-690 plays a critical role in TEM
    and is required for efficient trafficking of PECAM1 to and from the lateral border recycling compartment (LBRC) and is
    also essential for the LBRC membrane to be targeted around migrating leukocytes. Prevents phagocyte ingestion of
    closely apposed viable cells by transmitting 'detachment' signals, and changes function on apoptosis, promoting
    tethering of dying cells to phagocytes (the encounter of a viable cell with a phagocyte via the homophilic interaction
    of PECAM1 on both cell surfaces leads to the viable cell's active repulsion from the phagocyte. During apoptosis, the
    inside-out signaling of PECAM1 is somehow disabled so that the apoptotic cell does not actively reject the phagocyte
    anymore. The lack of this repulsion signal together with the interaction of the eat-me signals and their respective
    receptors causes the attachment of the apoptotic cell to the phagocyte, thus triggering the process of engulfment).
    Isoform Delta15 is unable to protect against apoptosis. Modulates BDKRB2 activation. Regulates bradykinin- and
    hyperosmotic shock-induced ERK1/2 activation in human umbilical cord vein cells (HUVEC)

         Genatlas biochemistry entry for PECAM1:
    platelet endothelial cell adhesion molecule 1,immunoglobulin superfamily,expressed on circulating
    platelets,monocytes,neutrophils,subsets of T cells,also a major constituent of the endothelial intercellular cell
    junction

    miRNA
    Products:            		 OriGene 3'-UTR Clone: PECAM1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat PECAM1
    8/24 QIAGEN miScript miRNA Assays for microRNAs that regulate PECAM1 (see all 24):
    hsa-miR-4291 hsa-miR-3614-3p hsa-miR-4272 hsa-miR-519a hsa-miR-3916 hsa-miR-3125 hsa-miR-1297 hsa-miR-374c
    SwitchGear 3'UTR luciferase reporter plasmid: PECAM1 3' UTR sequence
    Inhib. RNA
    Products:            		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for PECAM1 (see all 7)
    OriGene shRNA RFP: PECAM1
    OriGene siRNA: PECAM1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat PECAM1

    Gene Editing
    Products:    		DNA2.0 Custom Protein Engineering Service for PECAM1

    Clone
    Products:             		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for PECAM1 (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for PECAM1
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: PECAM1 (NM_000442)
    Sino Biological Human cDNA Clone for PECAM1
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for PECAM1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat PECAM1 

    Cell Line
    Products:             		GenScript Custom overexpressing Cell Line Services for PECAM1
    Search LifeMap BioReagents cell lines for PECAM1

    In Situ Assay
    Products:       
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PECAM1

    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI10801826


    PECAM1 for ontologies           About GeneDecksing


    Animal Models:
         Mouse knock-out Pecam1tm1Mak for PECAM1
         11 MGI mutant phenotypes (inferred from 2 alleles) (MGI details for Pecam1):
     cardiovascular system  cellular  digestive/alimentary  hematopoietic system  homeostasis/metabolism 
     immune system  liver/biliary system  muscle  renal/urinary system  respiratory system 
     skeleton 

    PECAM1 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for PECAM1 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/16 super-pathways (see all 16) About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Platelet activation, signaling and aggregation
    		Platelet activation, signaling and aggregation1.00
    		Hemostasis0.43
    2Platelet degranulation
    		Platelet degranulation 1.00
    		Response to elevated platelet cytosolic Ca2+0.94
    3Cell adhesion_Integrin-mediated cell adhesion and migration
    		Cell adhesion_Endothelial cell contacts by non-junctional mechanisms0.21
    		Cell adhesion Endothelial cell contacts by non-junctional mechanisms0.21
    4Lymphocyte Signaling
    		Lymphocyte Signaling1.00
    5Angiogenesis
    		Angiogenesis1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for PECAM1
        Cell adhesion Endothelial cell contacts by non-junctional mechanisms

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for PECAM1
        Transendothelial Migration of Leukocytes

    2 Cell Signaling Technology (CST) Pathways for PECAM1
        Angiogenesis
    Lymphocyte Signaling

    1 GeneGo (Thomson Reuters) Pathway for PECAM1
        Cell adhesion Endothelial cell contacts by non-junctional mechanisms

    5/11        Reactome Pathways for PECAM1 (see all 11)
        Hemostasis
    Integrin cell surface interactions
    Platelet homeostasis
    PECAM1 interactions
    Response to elevated platelet cytosolic Ca2+


    3         Kegg Pathways  (Kegg details for PECAM1):
        Cell adhesion molecules (CAMs)
    Leukocyte transendothelial migration
    Malaria


    PECAM1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for PECAM1

    5/24 Interacting proteins for PECAM1 (P162841, 2, 3) via UniProtKB, MINT, STRING, and/or I2D (see all 24)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PTPN11Q061242, 3MINT-8031324 MINT-8031354 MINT-8031339 MINT-8033295 MINT-8033235 MINT-8033280 MINT-8033310 I2D: score=3 
    PTPN6P293502, 3MINT-8031294 MINT-8031309 MINT-8033265 MINT-8033250 I2D: score=3 
    SRCP129312, 3MINT-8033220 MINT-8031279 I2D: score=4 
    XRCC6P129562, 3MINT-63486 I2D: score=4 
    JUPP149231, 3EBI-716404,EBI-744449 I2D: score=3 
    About this table

    Gene Ontology (GO): 5/10 biological process terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002576platelet degranulation TAS--
    GO:0006909phagocytosis IDA12110892
    GO:0007155cell adhesion IEA--
    GO:0007165signal transduction TAS7994021
    GO:0007596blood coagulation TAS--


    PECAM1 for ontologies           About GeneDecksing



    Drugs & Compounds
    for PECAM1 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    PECAM1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for PECAM1
    10/60 Novoseek chemical compound relationships for PECAM1 gene (see all 60)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    vegf 70.3 78 16151023 (6), 17822316 (3), 15166262 (2), 11326478 (2) (see all 51)
    matrigel 58.4 7 19883577 (1), 9243511 (1), 10655298 (1), 12433657 (1) (see all 5)
    tyrosine 48.9 156 12972546 (6), 9774457 (5), 15201144 (4), 9054388 (4) (see all 48)
    laccer 35.2 11 16151023 (5), 15084746 (5)
    slex 31.2 1 18334960 (1)
    prasugrel 30.4 1 16754711 (1)
    adp 29.8 11 19850043 (2), 16754711 (1), 19096001 (1), 16546241 (1) (see all 6)
    paraffin 29.8 8 11844241 (2), 15355911 (2), 16096774 (1), 15679808 (1) (see all 5)
    carbimazole 26.6 5 10848805 (2), 10942385 (1)
    phosphotyrosine 26.5 9 7515918 (1), 1544907 (1), 9774457 (1), 9312087 (1)

    Search CenterWatch for drugs/clinical trials and news about PECAM1 / PECA1 

    Transcripts
    for PECAM1 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for PECAM1 gene: 
    NM_000442.4  

    Unigene Clusters for PECAM1:

    Platelet/endothelial cell adhesion molecule 1
    Hs.376675  [show with all ESTs], Hs.514412  [show with all ESTs]
    Unigene Representative Sequences: NM_000442, AF393678

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat PECAM1
    8/24 QIAGEN miScript miRNA Assays for microRNAs that regulate PECAM1 (see all 24):
    hsa-miR-4291 hsa-miR-3614-3p hsa-miR-4272 hsa-miR-519a hsa-miR-3916 hsa-miR-3125 hsa-miR-1297 hsa-miR-374c
    SwitchGear 3'UTR luciferase reporter plasmid: PECAM1 3' UTR sequence
    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for PECAM1 (see all 7)
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    OriGene siRNA: PECAM1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat PECAM1
    Clone
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PECAM1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PECAM1

    Additional cDNA sequence: 

    AF281287.1 AF281288.1 AF281289.1 AF281290.1 AF281291.1 AF281292.1 AF281293.1 AF281294.1 
    AF281295.1 AF281296.1 AF281297.1 AF281298.1 AF281299.1 AF281300.1 AF281301.1 AF393676.1 
    AF393677.1 AF393678.1 JQ287500.1 S66450.1 X96849.1 

    19 DOTS entries:

    DT.40271821  DT.91998572  DT.100866813  DT.311597  DT.100016242  DT.100866816  DT.92000070  DT.100866810 
    DT.97759930  DT.100866803  DT.100866818  DT.40195550  DT.100866815  DT.120996412  DT.120996468  DT.92000018 
    DT.97763648  DT.100042610  DT.100866806 

    24/439 AceView cDNA sequences (see all 439):

    CR595917 AI686366 AA564715 CA440040 AL538940 BQ109454 CA307538 BM998585 
    AA056355 AW469143 AA713790 BG272085 BQ948402 BX358463 BF435623 S66450 
    C18167 CD369887 BE465285 BU789035 AA761616 BM974903 CA442225 AW276352 

    GeneLoc Exon Structure


    Expression
    for PECAM1 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    PECAM1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CAATGAAACC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    PECAM1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    10/18 LifeMap In Vivo Development Anatomical Compartments/Cells (see all 18) 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BrainBlood Brain BarrierAdult Endothelial CellsBlood Brain Barrier, Endothelium
    BrainBlood Brain BarrierEndothelial CellsBlood Brain Barrier, Endothelium
    BrainBlood Brain BarrierPostnatal Endothelial CellsBlood Brain Barrier, Endothelium
    HeartEndocardiumCushion Mesenchymal CellsEndocardium
    HeartEndocardiumEndocardial CellsEndocardium
    HeartEndocardiumEndocardial Tube CellsEndocardium
    Lateral Plate MesodermEmbryonic Capillary PlexusAngioblastsEndothelium
    Lateral Plate MesodermPaired Dorsal AortaArterial endothelial cellsEndothelium
    Lateral Plate MesodermProepicardiumAngioblastsEndothelium
    PlacentaChorioallantoic PlacentaExtraembryonic AngioblastsEndothelium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 10/45 LifeMap Cells (see all 45) 
    NameCategory
    Bone marrow-derived ALDH+ cells (ALD) (Adult Stem / Progenitor Cell)Bone
    Bone marrow-derived CD34+ stem cells (ACT34) (Adult Stem / Progenitor Cell)Bone
    PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)Blood, Endothelium
    PureStem™ endothelial Progenitor 30-SM2-3 (Embryonic Progenitor Cell)Blood, Endothelium
    Endothelial progenitor cells (Adult Stem / Progenitor Cell)Endothelium
    Human umbilical vein endothelial cells (HUVEC) (Primary Cell)Endothelium
    PureStem™ endothelial progenitor 30-SM2-1 (Embryonic Progenitor Cell)Endothelium
    PureStem™ endothelial progenitor RP1-MV2-18 (Embryonic Progenitor Cell)Endothelium
    PureStem™ endothelial progenitor 30-MV2-14 (Embryonic Progenitor Cell)Endothelium
    Cardiosphere-derived cells (Primary Cell)Heart, Myocardium

    See PECAM1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for PECAM1

    SOURCE GeneReport for Unigene clusters: Hs.376675 Hs.514412

    UniProtKB/Swiss-Prot: PECA1_HUMAN, P16284
    Tissue specificity: Expressed on platelets and leukocytes and is primarily concentrated at the borders between
    endothelial cells. Isoform Long predominates in all tissues examined. Isoform Delta12 is detected only in trachea.
    Isoform Delta14-15 is only detected in lung. Isoform Delta14 is detected in all tissues examined with the strongest
    expression in heart. Isoform Delta15 is expressed in brain, testis, ovary, cell surface of platelets, human umbilical
    vein endothelial cells (HUVECs), Jurkat T-cell leukemia, human erythroleukemia (HEL) and U-937 histiocytic lymphoma
    cell lines (at protein level)

        SABiosciences Expression via Pathway-Focused PCR Arrays including PECAM1 (see all 8): 
              Extracellular Matrix & Adhesion Molecules in human mouse rat
              Cell Surface Markers in human mouse rat
              Terminal Differentiation Markers in human mouse rat
              Endothelial Cell Biology in human mouse rat
              Tight Junctions in human mouse rat

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    Orthologs
    for PECAM1 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of chordates.

    Orthologs for PECAM1 gene from 3/7 species (see all 7)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Pecam11 , 5 platelet/endothelial cell adhesion molecule 11, 5 73.19(n)1
    64.08(a)1    		   11 (69.92 cM)5
    186131  NM_008816.21  NP_032842.21 
     1066542175 
    chicken
    (Gallus gallus)    		 Aves PECAM11 platelet/endothelial cell adhesion molecule (CD31 antigen) 48.69(n)
    34.35(a)    		   771243  XM_001234535.1  XP_001234536.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii LOC5693861 platelet/endothelial cell adhesion molecule 42.67(n)
    28.92(a)    		   569386  XM_692767.4  XP_697859.4 

    Paralogs
    for PECAM1 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for PECAM1 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/121 NCBI SNPs in PECAM1 are shown (see all 121)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 17 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs1168156741,2
    		C,F,--62396632(+) CCCCAC/TGCCTT 1 -- ds50011Minor allele frequency- T:0.04WA 118
    rs129416981,2
    		C,F,A,H,--62396746(+) GTGGTC/TTTAAG 1 -- ds500112Minor allele frequency- T:0.46NS EA NA CSA WA 778
    rs1117180561,2
    		--62397176(+) TTATCG/AGGAAG 1 -- ut311Minor allele frequency- A:0.50CSA 2
    rs776488471,2
    		--62397430(+) ATAGCA/CTGCTG 1 -- ut310--------
    rs780220471,2
    		C,F,--62397786(+) CAGGGC/ACTTCC 1 -- ut311Minor allele frequency- A:0.11WA 118
    rs2004114201,2
    		C--62398069(+) AATCTC/TCCCAC 1 -- ut310--------
    rs2008372131,2
    		--62398351(+) GAGAC-/AAAATCGC 1 -- ut310--------
    rs72146431,2
    		C,F,H,--62398530(+) AAGTTC/G/TTACTG 2 -- ut3126NS EA NA WA CSA 2384
    rs72138891,2
    		C,F,H,--62398568(+) CTTCAA/GTGACC 1 -- ut3132Minor allele frequency- G:0.28NA NS EA WA CSA 2918
    rs1508946801,2
    		C,F,--62399202(+) GCTCCC/TGTGGC 1 -- ut311Minor allele frequency- T:0.02EU 569

    HapMap Linkage Disequilibrium report for PECAM1 (62399863 - 62401205 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for PECAM1: --
    Human Gene Mutation Database (HGMD): PECAM1

    SABiosciences Cancer Mutation PCR Assays
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    Disorders / Diseases
    for PECAM1 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    PECAM1 for disorders           About GeneDecksing

    OMIM gene information: 173445    OMIM disorders: --

    20/147 diseases for PECAM1 (see all 147):    About MalaCards
    erythema elevatum diutinum    tick-borne encephalitis    graft versus host disease    glanzmann's thrombasthenia
    b-cell non-hodgkin lymphoma    cerebral cavernous malformations    cavernous malformation    langerhans-cell histiocytosis
    lichen planus    non-hodgkin lymphoma    anal canal carcinoma    arteriovenous malformation
    plasmodium falciparum malaria    oral lichen planus    pre-eclampsia    myocardial infarction
    abdominal aortic aneurysm    pulmonary vein stenosis    acute myocardial infarction    thrombasthenia

    10/80 Novoseek disease relationships for PECAM1 gene (see all 80)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    angiosarcoma 52.6 3 18084256 (1)
    neovascularization 52.4 5 15818089 (2), 17654489 (1), 14517436 (1), 19515525 (1)
    melanoma experimental 47.9 1 7507944 (1)
    tumors 44.7 113 8226797 (9), 14517436 (4), 8604238 (3), 20074345 (3) (see all 65)
    inflammation 43.3 23 10900350 (2), 15589815 (2), 15756041 (1), 9159026 (1) (see all 17)
    hemangioma 40.6 6 9243511 (1), 9446823 (1), 18084256 (1)
    necrosis 38.9 17 8764109 (2), 17607964 (2), 17606807 (1), 9159026 (1) (see all 13)
    idiopathic membranous nephropathy 38.5 1 9551397 (1)
    atherosclerosis 34.2 15 15756041 (2), 17673705 (1), 19183069 (1), 14527361 (1) (see all 11)
    cerebral cavernous malformations 30.4 1 11844241 (1)

    Genetic Association Database (GAD): PECAM1
    Human Genome Epidemiology (HuGE) Navigator: PECAM1 (56 documents)

    Export disorders for PECAM1 gene to outside databases

    Publications
    for PECAM1 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for PECAM1 gene, integrated from 9 sources (see all 814):
    (articles sorted by number of sources associating them with PECAM1)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Codon 125 polymorphism of CD31 and susceptibility to malaria. (PubMed id 11791967)1, 2, 4 Casals-Pascual C....Roberts D.J. (2001)
    2. PECAM-1 (CD31) cloning and relation to adhesion molecules of the immunoglobulin gene superfamily. (PubMed id 1690453)1, 2, 3 Newman P.J....Muller W.A. (1990)
    3. Regulation of G protein-coupled receptor activities by the platelet-endothelial cell adhesion molecule, PECAM-1. (PubMed id 18672896)1, 2, 9 Yeh J.C....Frangos J.A. (2008)
    4. Association of Leu125Val polymorphism of platelet endothelial cell adhesion molecule-1 (PECAM-1) gene & soluble level of PECAM-1 with coronary artery disease in Asian Indians. (PubMed id 15756041)1, 4, 9 Fang L....Chatterjee S. (2005)
    5. Identification of PECAM-1 in solid tumor cells and its potential involvement in tumor cell adhesion to endothelium. (PubMed id 8226797)1, 2, 9 Tang D.G....Honn K.V. (1993)
    6. Tissue-specific distributions of alternatively spliced human PECAM-1 isoforms. (PubMed id 12433657)1, 2, 9 Wang Y.... Sheibani N. (2003)
    7. Donor CD31 genotype impacts on transplant complications after human leukocyte antigen-matched sibling allogeneic bone marrow transplantation. (PubMed id 15753851)1, 4, 9 Cavanagh G....Middleton P.G. (2005)
    8. Platelet-endothelial cell adhesion molecule-1 gene polymorphism and its soluble level are associated with severe coronary artery stenosis in Chinese Singaporean. (PubMed id 15589815)1, 4, 9 Wei H....Chatterjee S. (2004)
    9. Polymorphisms in the platelet-endothelial cell adhesion molecule-1 (PECAM-1) gene, Asn563Ser and Gly670Arg, associated with myocardial infarction in the Japanese. (PubMed id 11795274)1, 4, 9 Sasaoka T....Izumi T. (2001)
    10. Tyrosine residue in exon 14 of the cytoplasmic domain of platelet endothelial cell adhesion molecule-1 (PECAM-1/CD31) regulates ligand binding specificity. (PubMed id 9298995)1, 2, 9 Famiglietti J.... Albelda S.M. (1997)

    External Searches for PECAM1 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing PECAM1 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 5175 HGNC: 8823 AceView: PECAM1 euGenes: HUgn5175 ECgene: PECAM1 Kegg: 5175
    H-InvDB: PECAM1

    Other Databases showing PECAM1 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing PECAM1 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for PECAM1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for PECAM1 Genetics and Cytogenetics in Oncology and Haematology
    SHMPDhttp://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=PECAM-1
    Wikipedia http://en.wikipedia.org/wiki/CD31
    Functional Glycomics Gateway - Glycan Bindinghttp://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Itlect_265

    Intellectual Property
    for PECAM1 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for PECAM1 gene:
    Search GeneIP for patents involving PECAM1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

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