PDZK1P1 Gene pseudogene GIFtS : 20 GCID: GC01 M145924
PDZ Domain Containing 1 Pseudogene 1
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Aliasesfor PDZK1P1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section GeneCards Plus Aliases PDZ Domain Containing 1 Pseudogene 1 1 2
Export aliases for PDZK1P1 gene to outside databases Previous GC identifer: GC01M144634
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Summariesfor PDZK1P1 gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section GeneCards Plus GeneCards Summary for PDZK1P1 Gene: PDZK1P1 (PDZ domain containing 1 pseudogene 1) is a pseudogene.
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Genomic Viewsfor PDZK1P1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section GeneCards Plus Regulatory elements: Regulatory transcription factor binding sites in the PDZK1P1 gene promoter:ISGF-3 Ik-2 HNF-1 CUTL1 HNF-1A Ik-1 Other transcription factors Search Chromatin IP Primers for PDZK1P1 Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PDZK1P1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1q21.1 Ensembl cytogenetic band: 1q21.1 HGNC cytogenetic band: 1q21.1 PDZK1P1 Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M145924: view genomic region
(about GC identifiers )
Start: 145,924,388 bp from pter End:
145,942,619 bp from pter
Size: 18,232 bases Orientation:
minus strand
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Proteinsfor PDZK1P1 gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section GeneCards Plus UniProtKB/Swiss-Prot: PDZ1P_HUMAN, A8MUH7 See
protein sequence )Recommended Name: Size : 402 amino acids; 44056 DaCaution : Could be the product of a pseudogeneAlternative splicing : 2 isoforms : A8MUH7-1 A8MUH7-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for PDZK1P1: NX_A8MUH7 Explore proteomics data for PDZK1P1 at MOPED See PDZK1P1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB
PDZK1P1 Human Recombinant
Protein Products: PDZK1P1 Antibody
Products: PDZK1P1 Assay Products:
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Domains /for PDZK1P1 gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section GeneCards Plus 1 InterPro protein domain :
Graphical View of Domain Structure for InterPro Entry A8MUH7 ProtoNet protein and cluster: A8MUH7
UniProtKB/Swiss-Prot: PDZ1P_HUMAN, A8MUH7 Similarity : Belongs to the NHER familySimilarity : Contains 3 PDZ (DHR) domains
Find genes that share domains with PDZK1P1
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Functionfor PDZK1P1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
Animal Models: Cell Line GenScript Custom overexpressing Cell Line Services for PDZK1P1 Browse ESI BIO Cell Lines and PureStem Progenitors for PDZK1P1 In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1
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Localizationfor PDZK1P1 gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
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Pathways & Interactionsfor PDZK1P1 gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene) .
About This Section GeneCards Plus
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for PDZK1P1 Interactions: Search GeneGlobe Interaction Network for PDZK1P1
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Drugs & Compoundsfor PDZK1P1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB )
About This Section GeneCards Plus
Browse compounds at ApexBio Browse Tocris compounds for PDZK1P1 (PDZ1P)
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Transcriptsfor PDZK1P1 gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section GeneCards Plus 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000401011 (uc010ozf.2 uc001eov.1 ) ENST00000449151 GeneLoc Exon Structure
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Expression for PDZK1P1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GeneCards Plus
PDZK1P1 expression in normal human tissues
(normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS 2/3 CGAP TAG: -- About this image
PDZK1P1 expression in embryonic tissues and stem cells About this table LifeMap ,
the Embryonic Development and Stem Cells DatabasePDZK1P1 Protein expression data from MOPED1 2 3 : About this image Custom PCR Arrays for PDZK1P1 Primer human mouse Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat PDZK1P1 QuantiTect SYBR Green Assays in human mouse rat QuantiFast Probe-based Assays in human mouse rat In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1
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Orthologsfor PDZK1P1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section GeneCards Plus
ENSEMBL Gene Tree for PDZK1P1 (if available)TreeFam Gene Tree for PDZK1P1 (if available)
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Paralogsfor PDZK1P1 gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section GeneCards Plus Paralogs for PDZK1P1 gene 7 SIMAP similar genes for PDZK1P1 using alignment to 1 protein entry: PDZ1P_HUMAN :PDZK1 TJP2 DLG4 ARHGAP23 PDZD3 SLC9A3R1 SLC9A3R2
Find genes that share paralogs with PDZK1P1
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Genomic Variantsfor PDZK1P1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section GeneCards Plus Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical Chr 1 pos Sequence # AA Type More # Allele Pop Total More
HapMap Linkage Disequilibrium report for PDZK1P1 (145924388 - 145942619 bp)
Structural Variations Database of Genomic Variants (DGV) Selected variations for PDZK1P1 (see all 11 ): About this table Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor PDZK1P1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section GeneCards Plus
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Publicationsfor PDZK1P1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section GeneCards Plus PubMed articles for PDZK1P1 gene integrated from 10 sources :(articles sorted by number of sources associating them with PDZK1P1) Utopia : connect your pdf to the dynamic
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 (Nat. Genet. 2004) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 2 (Nature 2006)
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External Searches for PDZK1P1 gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section GeneCards Plus
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Genome Databases showing PDZK1P1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section GeneCards Plus
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Other Databases showing PDZK1P1 gene
(According to HUGE )
About This Section GeneCards Plus --
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Specialized Databases showing PDZK1P1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section GeneCards Plus
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About This Section GeneCards Plus Patent Information for PDZK1P1 gene: PDZK1P1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PDZK1P1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section GeneCards Plus
Block miRNA regulation of human, mouse, rat PDZK1P1 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing PDZK1P1 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PDZK1P1 Predesigned siRNA for gene silencing in human mouse rat QuantiFast Probe-based Assays in human mouse rat QuantiTect SYBR Green Assays in human mouse rat Custom PCR Arrays for PDZK1P1 Search Chromatin IP Primers for PDZK1P1 Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat PDZK1P1 Search GeneGlobe Interaction Network for PDZK1P1 Regulatory tfbs in PDZK1P1 promoter
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1
Search ThermoFisher Antibodies for PDZK1P1
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PDZK1P1
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