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PDZK1P1 Gene(Pseudogene)

PDZ Domain Containing 1 Pseudogene 1

GCID:
GC01M147996
GIFtS:
21
Genes Participants
UDN Logo

Aliases for PDZK1P1 Gene

Aliases for PDZK1P1 Gene

  • PDZ Domain Containing 1 Pseudogene 1 2 3 5
  • PDZ Domain Containing 1 Pseudogene 2 2 3
  • PDZK1P2 3 4
  • PDZ Domain-Containing 1 Pseudogene 1 4
  • PDZ Domain-Containing 1 Pseudogene 2 4
  • OTTHUMT00000038524 3

External Ids for PDZK1P1 Gene

Previous HGNC Symbols for PDZK1P1 Gene

  • PDZK1P2

Previous GeneCards Identifiers for PDZK1P1 Gene

  • GC01M144634
  • GC01M145924

Summaries for PDZK1P1 Gene

GeneCards Summary for PDZK1P1 Gene

PDZK1P1 (PDZ Domain Containing 1 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDZK1P1 Gene

Genomics for PDZK1P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for PDZK1P1 Gene


Transcription factor binding sites by QIAGEN in the PDZK1P1 gene promoter:

Genomic Location for PDZK1P1 Gene

Chromosome:
1
Start:
147,993,862 bp from pter
End:
148,014,956 bp from pter
Size:
21,095 bases
Orientation:
Minus strand

Genomic View for PDZK1P1 Gene

Genes around PDZK1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDZK1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDZK1P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PDZK1P1 Gene

Proteins for PDZK1P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for PDZK1P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MUH7-PDZ1P_HUMAN
    Recommended name:
    Putative PDZ domain-containing protein PDZK1P1
    Protein Accession:
    A8MUH7

    Protein attributes for PDZK1P1 Gene

    Size:
    402 amino acids
    Molecular mass:
    44056 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for PDZK1P1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PDZK1P1 Gene

Proteomics data for PDZK1P1 Gene at MOPED

Protein Expression for PDZK1P1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for PDZK1P1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PDZK1P1 Gene

Domains & Families for PDZK1P1 Gene

Protein Domains for PDZK1P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for PDZK1P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MUH7

UniProtKB/Swiss-Prot:

PDZ1P_HUMAN :
  • Contains 3 PDZ (DHR) domains.
  • Belongs to the NHER family.
Domain:
  • Contains 3 PDZ (DHR) domains.
Family:
  • Belongs to the NHER family.
genes like me logo Genes that share domains with PDZK1P1: view

No data available for Gene Families for PDZK1P1 Gene

Function for PDZK1P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDZK1P1 Gene

Localization for PDZK1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PDZK1P1 Gene

Pathways & Interactions for PDZK1P1 Gene

SuperPathways for PDZK1P1 Gene

PathCards logoMore details on SuperPathways for PDZK1P1
No Data Available

Interacting Proteins for PDZK1P1 Gene

Gene Ontology (GO) - Biological Process for PDZK1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PDZK1P1 Gene

Drugs & Compounds for PDZK1P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PDZK1P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for PDZK1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PDZK1P1 Gene

No ASD Table

Relevant External Links for PDZK1P1 Gene

GeneLoc Exon Structure for
PDZK1P1
ECgene alternative splicing isoforms for
PDZK1P1

Expression for PDZK1P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for PDZK1P1 Gene

mRNA expression in normal human tissues for PDZK1P1 Gene
mRNA expression by GTEx for PDZK1P1 Gene

mRNA differential expression in normal tissues according to GTEx for PDZK1P1 Gene

This gene is overexpressed in Kidney - Cortex (x22.1), Liver (x6.9), Brain - Cerebellar Hemisphere (x4.8), Brain - Cerebellum (x4.3), and Small Intestine - Terminal Ileum (x4.2).

Protein differential expression in normal tissues from HIPED for PDZK1P1 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PDZK1P1 Gene



genes like me logo Genes that share expression patterns with PDZK1P1: view

Protein tissue co-expression partners for PDZK1P1 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for PDZK1P1 Gene

Orthologs for PDZK1P1 Gene

Evolution for PDZK1P1 Gene

ENSEMBL:
Gene Tree for PDZK1P1 (if available)
TreeFam:
Gene Tree for PDZK1P1 (if available)

No data available for Orthologs for PDZK1P1 Gene

Paralogs for PDZK1P1 Gene

(7) SIMAP similar genes for PDZK1P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PDZK1P1: view

No data available for Paralogs for PDZK1P1 Gene

Variants for PDZK1P1 Gene

Sequence variations from dbSNP and Humsavar for PDZK1P1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1775268 -- 148,006,205(+) CCTTG(A/C)ACCAG intron-variant
rs1775269 -- 148,007,211(+) GCTGG(A/G)ACTAC intron-variant
rs372570345 -- 147,998,598(+) ATTTT(A/G)GCCGG intron-variant
rs372793024 -- 147,999,451(+) AAAAT(G/T)AGCTG intron-variant
rs369604388 -- 148,007,221(+) CAGGC(A/G)CCCAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PDZK1P1 Gene

Variant ID Type Subtype PubMed ID
nsv7181 OTHER Inversion 18451855
dgv15n16 CNV Deletion 17901297
dgv46e201 CNV Deletion 23290073
esv529 CNV CNV 17122850
nsv428224 CNV Gain 18775914
dgv113e1 CNV Complex 17122850
dgv114e1 CNV Complex 17122850
nsv8114 CNV Loss 18304495
nsv511130 CNV Loss 21212237
nsv872268 CNV Gain 21882294
nsv8180 CNV Loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for PDZK1P1 Gene

Disorders for PDZK1P1 Gene

Relevant External Links for PDZK1P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PDZK1P1

No disorders were found for PDZK1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDZK1P1 Gene

Publications for PDZK1P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for PDZK1P1 Gene

Sources for PDZK1P1 Gene

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