PDZK1P1 Gene
pseudogene GIFtS: 20
GCID: GC01M145924
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PDZ Domain Containing 1 Pseudogene 1
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Aliases
for PDZK1P1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
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| Aliases |
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| PDZ Domain Containing 1 Pseudogene 11 2 |
Export aliases for PDZK1P1 gene to outside databasesPrevious GC identifer: GC01M144634 |
Summaries
for PDZK1P1 gene(According to Entrez Gene,
GeneCards,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
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GeneCards Summary for PDZK1P1 Gene:
PDZK1P1 (PDZ domain containing 1 pseudogene 1) is a pseudogene.
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Genomic Views
for PDZK1P1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 75),
Regulatory elements and Epigenetics data according to
QIAGEN, and/or
SwitchGear Genomics)
About This Section
TryGeneCards Plus | Regulatory elements:
 Regulatory transcription factor binding sites in the PDZK1P1 gene promoter:
ISGF-3 Ik-2 HNF-1 CUTL1 HNF-1A Ik-1
Other transcription factors
Search Chromatin IP Primers for PDZK1P1
Epigenetics:
| | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PDZK1P1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q21.1 Ensembl cytogenetic band: 1q21.1 HGNC cytogenetic band: 1q21.1PDZK1P1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M145924: view genomic region
(about GC identifiers)
Start:
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145,924,388 bp from pter |
End:
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145,942,619 bp from pter |
Size:
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18,232 bases |
Orientation:
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minus strand |
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Proteins
for PDZK1P1 gene
(According to
1UniProtKB,
HORDE,
2neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Antibodies by
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: PDZ1P_HUMAN, A8MUH7 (See
protein sequence)Recommended Name: Putative PDZ domain-containing protein 1P Size: 402 amino acids; 44056 Da
Caution: Could be the product of a pseudogeneAlternative splicing: 2 isoforms: A8MUH7-1 A8MUH7-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for PDZK1P1: NX_A8MUH7
Explore proteomics data for PDZK1P1 at MOPED
See PDZK1P1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB
PDZK1P1 Human Recombinant
Protein Products:PDZK1P1 Antibody
Products:PDZK1P1 Assay Products: |
Domains /
Families
for PDZK1P1 gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
TryGeneCards Plus | 1 InterPro protein domain:Graphical View of Domain Structure for InterPro Entry A8MUH7 ProtoNet protein and cluster: A8MUH7 UniProtKB/Swiss-Prot: PDZ1P_HUMAN, A8MUH7Similarity: Belongs to the NHER familySimilarity: Contains 3 PDZ (DHR) domains
PDZK1P1 for domains About GeneDecksing
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Function
for PDZK1P1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
transcription factor targeting from QIAGEN
and/or HOMER,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
SwitchGear Genomics,
Gene Editing from DNA2.0,
Clones from OriGene,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
ESI BIO,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Animal Models:
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for PDZK1P1 | |  | Browse ESI BIO Cell Lines and PureStem Progenitors for PDZK1P1  | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1 |
Localization
for PDZK1P1 gene
(According to UniProtKB, COMPARTMENTS Subcellular localization database,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Pathways & Interactions
for PDZK1P1 gene
(SuperPaths according to PathCards,
Pathways according to
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
QIAGEN,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene).
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Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for PDZK1P1
Interactions:
Search GeneGlobe Interaction Network for PDZK1P1
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Drugs & Compounds
for PDZK1P1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience,
ApexBio,
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB)
About This Section
TryGeneCards Plus |  Browse compounds at ApexBio
 Browse Tocris compounds for PDZK1P1 (PDZ1P)
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Transcripts
for PDZK1P1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
SwitchGear Genomics,
Tagged/untagged cDNA clones from
OriGene,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene, and/or
QIAGEN
)
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2 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000401011(uc010ozf.2 uc001eov.1) ENST00000449151
GeneLoc Exon Structure
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Expression
for PDZK1P1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MaxQB,
plus additional links to
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
QIAGEN,
Primers from
OriGene, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
TryGeneCards Plus | PDZK1P1 expression in normal human tissues
(normalized intensities) PDZK1P1 embryonic expression: see 
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
About this image
PDZK1P1 expression in embryonic tissues and stem cells About this table
Data from LifeMap,
the Embryonic Development and Stem Cells Database
PDZK1P1 Protein expression data from MOPED1, PaxDb2 and
MaxQB3:  About this image
Custom PCR Arrays for PDZK1P1
Primer
Products: |  | OriGene qSTAR qPCR primer pairs in human, mouse for PDZK1P1
| | | Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat PDZK1P1 | | | QuantiTect SYBR Green Assays in human, mouse, rat PDZK1P1 | | | QuantiFast Probe-based Assays in human, mouse, rat PDZK1P1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1 |
Orthologs
for PDZK1P1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
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--
ENSEMBL Gene Tree for PDZK1P1 (if available)
TreeFam Gene Tree for PDZK1P1 (if available) |
Paralogs
for PDZK1P1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
TryGeneCards Plus | Paralogs for PDZK1P1 gene
7 SIMAP similar genes for PDZK1P1 using alignment to 1 protein entry: PDZ1P_HUMAN:PDZK1 TJP2 DLG4 ARHGAP23 PDZD3 SLC9A3R1
SLC9A3R2
PDZK1P1 for paralogs About GeneDecksing
|
Genomic Variants
for PDZK1P1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD), the Human Cytochrome P450 Allele
Nomenclature Database, and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for PDZK1P1 (145924388 - 145942619 bp)
Structural Variations
Database of Genomic Variants (DGV) Selected variations for PDZK1P1 (see all 11): About this table
| | Site Specific Mutation Identification with PCR Assays |
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Disorders
/ Diseases
for PDZK1P1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
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Publications
for PDZK1P1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
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PubMed articles for PDZK1P1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with PDZK1P1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (Nature 2006)
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External Searches for PDZK1P1 gene (in PubMed,
OMIM, and NCBI Bookshelf)
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Genome Databases showing PDZK1P1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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|
Other Databases showing PDZK1P1 gene
(According to HUGE)
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Specialized Databases showing PDZK1P1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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TryGeneCards Plus | Patent Information for PDZK1P1 gene:
Search GeneIP for patents involving PDZK1P1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for PDZK1P1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or
ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
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|  | Block miRNA regulation of human, mouse, rat PDZK1P1 using miScript Target Protectors | | SeqTarget long-range PCR primers for resequencing PDZK1P1 | | | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat PDZK1P1 | | Predesigned siRNA for gene silencing in human, mouse, rat PDZK1P1 | | | QuantiFast Probe-based Assays in human, mouse, rat PDZK1P1 | | QuantiTect SYBR Green Assays in human, mouse, rat PDZK1P1 | | | Custom PCR Arrays for PDZK1P1 | | Search Chromatin IP Primers for PDZK1P1 | | | Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat PDZK1P1 | | Search GeneGlobe Interaction Network for PDZK1P1 | | | Regulatory tfbs in PDZK1P1 promoter |
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 |  | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1 |
| |  |  |  |  | | | Search ThermoFisher Antibodies for PDZK1P1 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PDZK1P1 |
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