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Aliases for PDZK1P1 Gene

Aliases for PDZK1P1 Gene

  • PDZ Domain Containing 1 Pseudogene 1 2 3
  • PDZ Domain Containing 1 Pseudogene 2 2 3
  • OTTHUMT00000038524 3
  • PDZK1P1 PDZK1P2 4
  • PDZK1P2 3

External Ids for PDZK1P1 Gene

Previous Symbols for PDZK1P1 Gene

  • PDZK1P2

Summaries for PDZK1P1 Gene

GeneCards Summary for PDZK1P1 Gene

PDZK1P1 (PDZ Domain Containing 1 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDZK1P1 Gene

Genomics for PDZK1P1 Gene

Genomic Location for PDZK1P1 Gene

Start:
147,993,801 bp from pter
End:
148,014,956 bp from pter
Size:
21,156 bases
Orientation:
Minus strand

Genomic View for PDZK1P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PDZK1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDZK1P1 Gene

Regulatory Elements for PDZK1P1 Gene

Proteins for PDZK1P1 Gene

  • Protein details for PDZK1P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MUH7-PDZ1P_HUMAN
    Recommended name:
    Putative PDZ domain-containing protein 1P
    Protein Accession:
    A8MUH7
    Secondary Accessions:

    Protein attributes for PDZK1P1 Gene

    Size:
    402 amino acids
    Molecular mass:
    44056 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for PDZK1P1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PDZK1P1 Gene

Proteomics data for PDZK1P1 Gene at MOPED

Post-translational modifications for PDZK1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDZK1P1 Gene

Domains for PDZK1P1 Gene

Protein Domains for PDZK1P1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

PDZ1P_HUMAN
Domain:
  • Contains 3 PDZ (DHR) domains.:
    • A8MUH7
Family:
  • Belongs to the NHER family.:
    • A8MUH7
genes like me logo Genes that share domains with PDZK1P1: view

No data available for Gene Families for PDZK1P1 Gene

Function for PDZK1P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for PDZK1P1 Gene

Localization for PDZK1P1 Gene

No data available for Gene Ontology (GO) - Cellular Components for PDZK1P1 Gene

Pathways for PDZK1P1 Gene

SuperPathways for PDZK1P1 Gene

No Data Available

Interacting Proteins for PDZK1P1 Gene

Gene Ontology (GO) - Biological Process for PDZK1P1 Gene

None

No data available for Pathways by source for PDZK1P1 Gene

Transcripts for PDZK1P1 Gene

mRNA/cDNA for PDZK1P1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PDZK1P1 Gene

No ASD Table

Relevant External Links for PDZK1P1 Gene

GeneLoc Exon Structure for
PDZK1P1
ECgene alternative splicing isoforms for
PDZK1P1

Expression for PDZK1P1 Gene

mRNA expression in normal human tissues for PDZK1P1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PDZK1P1 Gene

This gene is overexpressed in Kidney - Cortex (22.1), Liver (6.9), Brain - Cerebellar Hemisphere (4.8), Brain - Cerebellum (4.3), and Small Intestine - Terminal Ileum (4.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for PDZK1P1 Gene

genes like me logo Genes that share expressions with PDZK1P1: view

Orthologs for PDZK1P1 Gene

Evolution for PDZK1P1 Gene

ENSEMBL:
Gene Tree for PDZK1P1 (if available)
TreeFam:
Gene Tree for PDZK1P1 (if available)

No data available for Orthologs for PDZK1P1 Gene

Paralogs for PDZK1P1 Gene

Selected SIMAP similar genes for PDZK1P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PDZK1P1: view

No data available for Paralogs for PDZK1P1 Gene

Variants for PDZK1P1 Gene

Sequence variations from dbSNP and Humsavar for PDZK1P1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs113873955 -- 148,014,392(+) CACAT(A/C)GGCGG intron-variant
rs368222920 -- 148,015,392(+) TCATT(C/G)CAACC upstream-variant-2KB
rs370379154 -- 148,015,067(+) TCCGT(A/C)TGTCG upstream-variant-2KB
rs372803048 -- 148,015,557(+) GATGC(A/G)CCCGC upstream-variant-2KB
rs374322234 -- 148,015,336(+) CTCTC(-/GACGGAG)TCTCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PDZK1P1 Gene

Variant ID Type Subtype PubMed ID
nsv7181 OTHER Inversion 18451855
dgv15n16 CNV Deletion 17901297
dgv46e201 CNV Deletion 23290073
esv529 CNV CNV 17122850
nsv428224 CNV Gain 18775914
dgv113e1 CNV Complex 17122850
dgv114e1 CNV Complex 17122850
nsv8114 CNV Loss 18304495
nsv511130 CNV Loss 21212237
nsv872268 CNV Gain 21882294
nsv8180 CNV Loss 18304495

Relevant External Links for PDZK1P1 Gene

HapMap Linkage Disequilibrium report
PDZK1P1

Disorders for PDZK1P1 Gene

No disorders were found for PDZK1P1 Gene.

No data available for UniProtKB/Swiss-Prot for PDZK1P1 Gene

Publications for PDZK1P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for PDZK1P1 Gene

Sources for PDZK1P1 Gene

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