Free for academic non-profit institutions. Other users need a Commercial license

PDZK1P1 Gene(Pseudogene)

PDZ Domain Containing 1 Pseudogene 1

GCID:
GC01M147996
GIFtS:
18
Genes Participants
UDN Logo

Aliases for PDZK1P1 Gene

Aliases for PDZK1P1 Gene

  • PDZ Domain Containing 1 Pseudogene 1 2 3 5
  • PDZ Domain Containing 1 Pseudogene 2 2 3
  • PDZK1P2 3 4
  • PDZ Domain-Containing 1 Pseudogene 1 4
  • PDZ Domain-Containing 1 Pseudogene 2 4

External Ids for PDZK1P1 Gene

Previous HGNC Symbols for PDZK1P1 Gene

  • PDZK1P2

Previous GeneCards Identifiers for PDZK1P1 Gene

  • GC01M144634
  • GC01M145924

Summaries for PDZK1P1 Gene

GeneCards Summary for PDZK1P1 Gene

PDZK1P1 (PDZ Domain Containing 1 Pseudogene 1) is a Pseudogene.

Additional gene information for PDZK1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDZK1P1 Gene

Genomics for PDZK1P1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for PDZK1P1 Gene

Promoters and enhancers for PDZK1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I148013 Enhancer 0.2 Ensembl 550.8 +0.7 696 2.3 PDZK1P1 RNU1-129P ENSG00000273059 LOC105371228
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PDZK1P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PDZK1P1 gene promoter:

Genomic Locations for PDZK1P1 Gene

Genomic Locations for PDZK1P1 Gene
chr1:147,993,862-148,014,956
(GRCh38/hg38)
Size:
21,095 bases
Orientation:
Minus strand
chr1:145,924,388-145,942,619
(GRCh37/hg19)

Genomic View for PDZK1P1 Gene

Genes around PDZK1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDZK1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDZK1P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PDZK1P1 Gene

Proteins for PDZK1P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for PDZK1P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MUH7-PDZ1P_HUMAN
    Recommended name:
    Putative PDZ domain-containing protein PDZK1P1
    Protein Accession:
    A8MUH7

    Protein attributes for PDZK1P1 Gene

    Size:
    402 amino acids
    Molecular mass:
    44056 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for PDZK1P1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PDZK1P1 Gene

Protein Expression for PDZK1P1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for PDZK1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDZK1P1 Gene

Domains & Families for PDZK1P1 Gene

Protein Domains for PDZK1P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for PDZK1P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MUH7

UniProtKB/Swiss-Prot:

PDZ1P_HUMAN :
  • Belongs to the NHER family.
Family:
  • Belongs to the NHER family.
genes like me logo Genes that share domains with PDZK1P1: view

No data available for Gene Families for PDZK1P1 Gene

Function for PDZK1P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for PDZK1P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDZK1P1 Gene

Localization for PDZK1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PDZK1P1 Gene

Pathways & Interactions for PDZK1P1 Gene

SuperPathways for PDZK1P1 Gene

PathCards logo More details on SuperPathways for PDZK1P1
No Data Available

Interacting Proteins for PDZK1P1 Gene

Selected Interacting proteins: A8MUH7-PDZ1P_HUMAN for PDZK1P1 Gene via IID

Gene Ontology (GO) - Biological Process for PDZK1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PDZK1P1 Gene

Drugs & Compounds for PDZK1P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PDZK1P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for PDZK1P1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PDZK1P1 Gene

No ASD Table

Relevant External Links for PDZK1P1 Gene

GeneLoc Exon Structure for
PDZK1P1
ECgene alternative splicing isoforms for
PDZK1P1

Expression for PDZK1P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PDZK1P1 Gene

mRNA expression in normal human tissues for PDZK1P1 Gene
mRNA expression by GTEx for PDZK1P1 Gene

mRNA differential expression in normal tissues according to GTEx for PDZK1P1 Gene

This gene is overexpressed in Kidney - Cortex (x22.1), Liver (x6.9), Brain - Cerebellar Hemisphere (x4.8), Brain - Cerebellum (x4.3), and Small Intestine - Terminal Ileum (x4.2).

Protein differential expression in normal tissues from HIPED for PDZK1P1 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PDZK1P1 Gene



Protein tissue co-expression partners for PDZK1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of PDZK1P1 Gene:

PDZK1P1
genes like me logo Genes that share expression patterns with PDZK1P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDZK1P1 Gene

Orthologs for PDZK1P1 Gene

Evolution for PDZK1P1 Gene

ENSEMBL:
Gene Tree for PDZK1P1 (if available)
TreeFam:
Gene Tree for PDZK1P1 (if available)

No data available for Orthologs for PDZK1P1 Gene

Paralogs for PDZK1P1 Gene

(7) SIMAP similar genes for PDZK1P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PDZK1P1: view

No data available for Paralogs for PDZK1P1 Gene

Variants for PDZK1P1 Gene

Sequence variations from dbSNP and Humsavar for PDZK1P1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001534692 -- 148,011,459(-) C/T intron_variant
rs1001609992 -- 148,011,614(-) A/G intron_variant
rs1002537748 -- 148,010,472(-) C/T non_coding_transcript_variant
rs1002611260 -- 148,010,816(-) G/A/T intron_variant
rs1005006946 -- 148,011,287(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PDZK1P1 Gene

Variant ID Type Subtype PubMed ID
dgv184n106 CNV deletion 24896259
dgv327n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
esv2761299 CNV gain+loss 21179565
nsv1000564 CNV gain 25217958
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1078214 CNV deletion 25765185
nsv1132304 CNV duplication 24896259
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv511130 CNV loss 21212237
nsv8114 CNV loss 18304495
nsv8180 CNV loss 18304495
nsv946313 CNV duplication 23825009
nsv951832 CNV deletion 24416366

Additional Variant Information for PDZK1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PDZK1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PDZK1P1 Gene

Disorders for PDZK1P1 Gene

Additional Disease Information for PDZK1P1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for PDZK1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDZK1P1 Gene

Publications for PDZK1P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58

Products for PDZK1P1 Gene

Sources for PDZK1P1 Gene

Content
Loading form....