Aliases for PDZK1P1 Gene
Aliases for PDZK1P1 Gene
External Ids for PDZK1P1 Gene
- HGNC: 31974
- Entrez Gene: 100034743
- Ensembl: ENSG00000244211
- UniProtKB: A8MUH7
Previous HGNC Symbols for PDZK1P1 Gene
- PDZK1P2
Previous GeneCards Identifiers for PDZK1P1 Gene
- GC01M144634
- GC01M145924
Summaries for PDZK1P1 Gene
GeneCards Summary for PDZK1P1 Gene
PDZK1P1 (PDZ Domain Containing 1 Pseudogene 1) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDZK1P1 Gene
Genomics for PDZK1P1 Gene
Regulatory Elements for PDZK1P1 Gene
- Transcription factor binding sites by QIAGEN in the PDZK1P1 gene promoter:
Regulatory Element Products
Genomic Location for PDZK1P1 Gene
- Chromosome:
- 1
- Start:
- 147,993,862 bp from pter
- End:
- 148,014,956 bp from pter
- Size:
- 21,095 bases
- Orientation:
- Minus strand
Genomic View for PDZK1P1 Gene
Genes around PDZK1P1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q21.2 by Ensembl
- 1q21.2 by Entrez Gene
- 1q21.2 by HGNC
PDZK1P1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for PDZK1P1 Gene
Proteins for PDZK1P1 Gene
-
Protein details for PDZK1P1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- A8MUH7-PDZ1P_HUMAN
- Recommended name:
- Putative PDZ domain-containing protein PDZK1P1
- Protein Accession:
- A8MUH7
Protein attributes for PDZK1P1 Gene
- Size:
- 402 amino acids
- Molecular mass:
- 44056 Da
- Quaternary structure:
- No Data Available
Protein Expression for PDZK1P1 Gene
Post-translational modifications for PDZK1P1 Gene
Antibody Products
- Search GeneTex for Antibodies for PDZK1P1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for PDZK1P1
- Origene Custom Protein Services for PDZK1P1
- Search GeneTex for Proteins for PDZK1P1
No data available for DME Specific Peptides for PDZK1P1 Gene
Domains & Families for PDZK1P1 Gene
Suggested Antigen Peptide Sequences for PDZK1P1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
A8MUH7- Family:
-
- Belongs to the NHER family.
No data available for Gene Families for PDZK1P1 Gene
Function for PDZK1P1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for PDZK1P1
-
- Search ViGene Biosciences for PDZK1P1
CRISPR Products
- Browse CRISPR knockouts for PDZK1P1
miRNA Products
- Search ViGene Biosciences for PDZK1P1
Inhibitory RNA Products
- Search ViGene Biosciences for PDZK1P1
Clone Products
- GenScript: Custom all cDNA clones Services for PDZK1P1
- VectorBuilder custom plasmid, inducible vectors for PDZK1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for PDZK1P1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDZK1P1 Gene
Localization for PDZK1P1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PDZK1P1 Gene
Transcripts for PDZK1P1 Gene
mRNA/cDNA for PDZK1P1 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for PDZK1P1
miRNA Products
- Search ViGene Biosciences for PDZK1P1
Inhibitory RNA Products
- Search ViGene Biosciences for PDZK1P1
Clone Products
- GenScript: Custom all cDNA clones Services for PDZK1P1
- VectorBuilder custom plasmid, inducible vectors for PDZK1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for PDZK1P1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for PDZK1P1 Gene
mRNA differential expression in normal tissues according to GTEx for PDZK1P1 Gene
This gene is overexpressed in Kidney - Cortex (x22.1), Liver (x6.9), Brain - Cerebellar Hemisphere (x4.8), Brain - Cerebellum (x4.3), and Small Intestine - Terminal Ileum (x4.2).
This gene is overexpressed in Plasma (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PDZK1P1 Gene
NURSA nuclear receptor signaling pathways regulating expression of PDZK1P1 Gene:
PDZK1P1Primer Products
-
OriGene qPCR primer pairs for PDZK1P1
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDZK1P1 Gene
Orthologs for PDZK1P1 Gene
No data available for Orthologs for PDZK1P1 Gene
Paralogs for PDZK1P1 Gene
(7) SIMAP similar genes for PDZK1P1 Gene using alignment to 1 proteins:
No data available for Paralogs for PDZK1P1 Gene
Variants for PDZK1P1 Gene
| SNP ID | Clin | Chr 01 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1001534692 | -- | 148,011,459(+) | ATTCT(C/T)GTGCT | intron-variant, upstream-variant-2KB | |
| rs1001609992 | -- | 148,011,614(+) | GGGAG(A/G)CGAGG | intron-variant, upstream-variant-2KB | |
| rs1002537748 | -- | 148,010,472(+) | TTTCT(C/T)AAAAA | nc-transcript-variant, upstream-variant-2KB | |
| rs1002611260 | -- | 148,010,816(+) | TAGTT(A/G/T)TATAG | intron-variant, upstream-variant-2KB | |
| rs1005006946 | -- | 148,011,287(+) | GTGCT(A/G)GATCT | intron-variant, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv184n106 | CNV | deletion | 24896259 |
| dgv327n100 | CNV | gain | 25217958 |
| dgv66e199 | CNV | deletion | 23128226 |
| esv2761299 | CNV | gain+loss | 21179565 |
| nsv1000564 | CNV | gain | 25217958 |
| nsv1003688 | CNV | gain | 25217958 |
| nsv1005055 | CNV | loss | 25217958 |
| nsv1078214 | CNV | deletion | 25765185 |
| nsv1132304 | CNV | duplication | 24896259 |
| nsv509457 | CNV | insertion | 20534489 |
| nsv510962 | OTHER | complex | 20534489 |
| nsv511130 | CNV | loss | 21212237 |
| nsv8114 | CNV | loss | 18304495 |
| nsv8180 | CNV | loss | 18304495 |
| nsv946313 | CNV | duplication | 23825009 |
| nsv951832 | CNV | deletion | 24416366 |
Relevant External Links for PDZK1P1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- PDZK1P1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PDZK1P1 Gene
Disorders for PDZK1P1 Gene
Relevant External Links for PDZK1P1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- PDZK1P1
No disorders were found for PDZK1P1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDZK1P1 Gene
Publications for PDZK1P1 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
- The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
Products for PDZK1P1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for PDZK1P1
- Origene Custom Protein Services for PDZK1P1
- Browse OriGene Inhibitory RNA Products For PDZK1P1
- OriGene qPCR primer pairs for PDZK1P1
- Browse CRISPR knockouts for PDZK1P1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For PDZK1P1
- GenScript: Custom all cDNA clones Services for PDZK1P1
- GenScript Custom Purified and Recombinant Proteins Services for PDZK1P1
- GenScript Custom Assay Services for PDZK1P1
- GenScript Custom overexpressing Cell Line Services for PDZK1P1
- Browse GenScript CRISPR for PDZK1P1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for PDZK1P1
- Browse Sino Biological cDNA Clones
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- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search GeneTex for Antibodies for PDZK1P1
- Search GeneTex for Proteins for PDZK1P1
- Search ViGene Biosciences for PDZK1P1
- Cyagen custom Knockout/knockin (KOKI) mouse models for PDZK1P1
- VectorBuilder custom plasmid, inducible vectors for PDZK1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for PDZK1P1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for PDZK1P1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer