PDZK1P1 Gene
pseudogene GIFtS : 25 GCID: GC01 M145924
PDZ Domain Containing 1 Pseudogene 1
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Aliasesfor PDZK1P1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section Subcategory (RNA class): lncRNAQuality score for the ORGUL clustered with this gene is 3 Aliases PDZ Domain Containing 1 Pseudogene 1 1 2
External Ids: HGNC: 31974 1 Entrez Gene: 728939 2 Ensembl: ENSG00000215860 7 UniProtKB: A8MUH7 3 Export aliases for PDZK1P1 gene to outside databases Previous GC identifer: GC01M144634
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Summariesfor PDZK1P1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section GeneCards Summary for PDZK1P1 Gene: PDZK1P1 (PDZ domain containing 1 pseudogene 1) is a pseudogene, and is affiliated with the lncRNA class.
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Genomic Viewsfor PDZK1P1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 73) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NT_167185.1 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the PDZK1P1 gene promoter:ISGF-3 Ik-2 HNF-1 CUTL1 HNF-1A Ik-1 Other transcription factors Search SABiosciences Chromatin IP Primers for PDZK1P1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PDZK1P1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1q21.1 Ensembl cytogenetic band: 1q21.1 HGNC cytogenetic band: 1q21.1 PDZK1P1 Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M145924: view genomic region
(about GC identifiers )
Start: 145,924,388 bp from pter End:
145,942,619 bp from pter
Size: 18,232 bases Orientation:
minus strand
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Proteinsfor PDZK1P1 gene
(According to
UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MAXQB
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Cloud-Clone Corp. ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Cloud-Clone Corp. ,
Ontologies according to Gene
Ontology Consortium 01 Oct 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
LSBio ,
Abcam , and/or
Cloud-Clone Corp. )
About This Section UniProtKB/Swiss-Prot: PDZ1P_HUMAN, A8MUH7 See
protein sequence )Recommended Name: Size : 402 amino acids; 44056 DaCaution : Could be the product of a pseudogeneAlternative splicing : 2 isoforms : A8MUH7-1 A8MUH7-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for PDZK1P1: NX_A8MUH7 Explore proteomics data for PDZK1P1 at MOPED PDZK1P1 Protein expression data from MOPED1 2 3 : About this image Human Recombinant Protein Products for PDZK1P1:
PDZK1P1 Antibody Products: Assay Products for PDZK1P1:
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Protein
Domains /for PDZK1P1 gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section 1 InterPro protein domain :
Graphical View of Domain Structure for InterPro Entry A8MUH7 ProtoNet protein and cluster: A8MUH7
UniProtKB/Swiss-Prot: PDZ1P_HUMAN, A8MUH7 Similarity : Belongs to the NHER familySimilarity : Contains 3 PDZ (DHR) domainsAbout GeneDecksing
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Functionfor PDZK1P1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene .)
About This Section Animal Models: In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1
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Pathways & Interactionsfor PDZK1P1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PDZK1P1
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Drugs & Compoundsfor PDZK1P1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
IUPHAR ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for PDZK1P1 (PDZ1P) PDZK1P1
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Transcriptsfor PDZK1P1 gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , KenesGroup ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,EMD Millipore ,
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section Unigene Cluster for PDZK1P1:
PDZ domain containing 1 pseudogene 1 Hs.696575 [show with all ESTs ] Unigene Representative Sequence: AK126719 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000401011 (uc010ozf.2 uc001eov.1 ) ENST00000449151 Additional mRNA sequence: AK126719.1 NR_003377.2
9 DOTS entries : DT.40215501 DT.40215503 DT.102820236 DT.405755 DT.121448657 DT.214578 DT.121363272 DT.40206531
DT.75103087 GeneLoc Exon Structure
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Expression for PDZK1P1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section PDZK1P1 expression in normal human tissues
(normalized intensities) PDZK1P1 embryonic expression: see See probesets specificity/sensitivity at GeneAnnot About this image BioGPS 2/3 CGAP TAG: -- About this image
PDZK1P1 expression in embryonic tissues and stem cells About this table LifeMap ,
the Embryonic Development and Stem Cells Database 5/3 selected tissues (see all 3 ) fully expand See PDZK1P1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for PDZK1P1 SOURCE GeneReport for Unigene cluster: Hs.696575 SABiosciences Custom PCR Arrays for PDZK1P1 Primer human mouse Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat PDZK1P1 QIAGEN QuantiTect SYBR Green Assays in human mouse rat QIAGEN QuantiFast Probe-based Assays in human mouse rat In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1
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Orthologsfor PDZK1P1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
ENSEMBL Gene Tree for PDZK1P1 (if available)TreeFam Gene Tree for PDZK1P1 (if available)
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Paralogsfor PDZK1P1 gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for PDZK1P1 gene 7 SIMAP similar genes for PDZK1P1 using alignment to 1 protein entry: PDZ1P_HUMAN :PDZK1 TJP2 DLG4 ARHGAP23 PDZD3 SLC9A3R1 SLC9A3R2 About GeneDecksing
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Genomic Variantsfor PDZK1P1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical Chr 1 pos Sequence # AA Type More # Allele Pop Total More
HapMap Linkage Disequilibrium report for PDZK1P1 (145924388 - 145942619 bp)
Structural Variations Database of Genomic Variants (DGV) 10/11 variations for PDZK1P1 (see all 11 ): About this table SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor PDZK1P1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Conferences by KenesGroup ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
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Publicationsfor PDZK1P1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for PDZK1P1 gene integrated from 9 sources :(articles sorted by number of sources associating them with PDZK1P1) Utopia : connect your pdf to the dynamic
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 (2004) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 2 (2006)
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External Searches for PDZK1P1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PDZK1P1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing PDZK1P1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing PDZK1P1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for PDZK1P1 gene: PDZK1P1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor PDZK1P1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , LSBio , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat PDZK1P1 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PDZK1P1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PDZK1P1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human mouse rat QIAGEN QuantiFast Probe-based Assays in human mouse rat QIAGEN QuantiTect SYBR Green Assays in human mouse rat
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for PDZK1P1
Search ThermoFisher Antibodies for PDZK1P1
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat PDZK1P1
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