Aliases for PDZK1P1 Gene
Aliases for PDZK1P1 Gene
External Ids for PDZK1P1 Gene
- HGNC: 31974
- Entrez Gene: 100034743
- Ensembl: ENSG00000215859
- UniProtKB: A8MUH7
Previous HGNC Symbols for PDZK1P1 Gene
- PDZK1P2
Previous GeneCards Identifiers for PDZK1P1 Gene
- GC01M144634
- GC01M145924
Summaries for PDZK1P1 Gene
GeneCards Summary for PDZK1P1 Gene
PDZK1P1 (PDZ Domain Containing 1 Pseudogene 1) is a Pseudogene.
Additional gene information for PDZK1P1 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDZK1P1 Gene
Genomics for PDZK1P1 Gene
GeneHancer (GH) Regulatory Elements for PDZK1P1 Gene
Promoters and enhancers for PDZK1P1 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01I148013 | Enhancer | 0.2 | Ensembl | 550.8 | +0.7 | 696 | 2.3 | PDZK1P1 RNU1-129P ENSG00000273059 LOC105371228 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around PDZK1P1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for PDZK1P1 Gene
Genomic Locations for PDZK1P1 Gene
- chr1:147,993,862-148,014,956
- (GRCh38/hg38)
- Size:
- 21,095 bases
- Orientation:
- Minus strand
- chr1:145,924,388-145,942,619
- (GRCh37/hg19)
Genomic View for PDZK1P1 Gene
Genes around PDZK1P1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q21.2 by Ensembl
- 1q21.2 by Entrez Gene
- 1q21.2 by HGNC
PDZK1P1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)


RefSeq DNA sequence for PDZK1P1 Gene
Proteins for PDZK1P1 Gene
-
Protein details for PDZK1P1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- A8MUH7-PDZ1P_HUMAN
- Recommended name:
- Putative PDZ domain-containing protein PDZK1P1
- Protein Accession:
- A8MUH7
Protein attributes for PDZK1P1 Gene
- Size:
- 402 amino acids
- Molecular mass:
- 44056 Da
- Quaternary structure:
- No Data Available
Protein Expression for PDZK1P1 Gene
Post-translational modifications for PDZK1P1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for PDZK1P1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for PDZK1P1
- Origene Custom Protein Services for PDZK1P1
- Search GeneTex for Proteins for PDZK1P1
No data available for DME Specific Peptides for PDZK1P1 Gene
Domains & Families for PDZK1P1 Gene
Suggested Antigen Peptide Sequences for PDZK1P1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
A8MUH7- Family:
-
- Belongs to the NHER family.
No data available for Gene Families for PDZK1P1 Gene
Function for PDZK1P1 Gene
Phenotypes From GWAS Catalog for PDZK1P1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for PDZK1P1
-
- Search ViGene Biosciences for PDZK1P1
CRISPR Products
- Browse CRISPR knockouts for PDZK1P1
- Applied Biological Materials CRISPR for PDZK1P1
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for PDZK1P1
Inhibitory RNA Products
- Search ViGene Biosciences for PDZK1P1
Clone Products
- GenScript: Custom all cDNA clones Services for PDZK1P1
- VectorBuilder custom plasmid, inducible vectors for PDZK1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for PDZK1P1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for PDZK1P1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDZK1P1 Gene
Localization for PDZK1P1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PDZK1P1 Gene
Transcripts for PDZK1P1 Gene
mRNA/cDNA for PDZK1P1 Gene
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for PDZK1P1
- Applied Biological Materials CRISPR for PDZK1P1
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for PDZK1P1
Inhibitory RNA Products
- Search ViGene Biosciences for PDZK1P1
Clone Products
- GenScript: Custom all cDNA clones Services for PDZK1P1
- VectorBuilder custom plasmid, inducible vectors for PDZK1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for PDZK1P1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for PDZK1P1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for PDZK1P1 Gene
mRNA differential expression in normal tissues according to GTEx for PDZK1P1 Gene
This gene is overexpressed in Kidney - Cortex (x22.1), Liver (x6.9), Brain - Cerebellar Hemisphere (x4.8), Brain - Cerebellum (x4.3), and Small Intestine - Terminal Ileum (x4.2).
This gene is overexpressed in Plasma (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PDZK1P1 Gene
NURSA nuclear receptor signaling pathways regulating expression of PDZK1P1 Gene:
PDZK1P1Primer Products
-
OriGene qPCR primer pairs for PDZK1P1
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDZK1P1 Gene
Orthologs for PDZK1P1 Gene
No data available for Orthologs for PDZK1P1 Gene
Paralogs for PDZK1P1 Gene
(7) SIMAP similar genes for PDZK1P1 Gene using alignment to 1 proteins:
No data available for Paralogs for PDZK1P1 Gene
Variants for PDZK1P1 Gene
SNP ID | Clin | Chr 01 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1001534692 | -- | 148,011,459(-) | C/T | intron_variant | |
rs1001609992 | -- | 148,011,614(-) | A/G | intron_variant | |
rs1002537748 | -- | 148,010,472(-) | C/T | non_coding_transcript_variant | |
rs1002611260 | -- | 148,010,816(-) | G/A/T | intron_variant | |
rs1005006946 | -- | 148,011,287(-) | G/A | intron_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv184n106 | CNV | deletion | 24896259 |
dgv327n100 | CNV | gain | 25217958 |
dgv66e199 | CNV | deletion | 23128226 |
esv2761299 | CNV | gain+loss | 21179565 |
nsv1000564 | CNV | gain | 25217958 |
nsv1003688 | CNV | gain | 25217958 |
nsv1005055 | CNV | loss | 25217958 |
nsv1078214 | CNV | deletion | 25765185 |
nsv1132304 | CNV | duplication | 24896259 |
nsv509457 | CNV | insertion | 20534489 |
nsv510962 | OTHER | complex | 20534489 |
nsv511130 | CNV | loss | 21212237 |
nsv8114 | CNV | loss | 18304495 |
nsv8180 | CNV | loss | 18304495 |
nsv946313 | CNV | duplication | 23825009 |
nsv951832 | CNV | deletion | 24416366 |
Additional Variant Information for PDZK1P1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- PDZK1P1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PDZK1P1 Gene
Disorders for PDZK1P1 Gene
Additional Disease Information for PDZK1P1
No disorders were found for PDZK1P1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDZK1P1 Gene
Publications for PDZK1P1 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
- The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
Products for PDZK1P1 Gene
- Browse R&D Systems for Antibodies
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- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- OriGene qPCR primer pairs for PDZK1P1
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- GenScript: Custom all cDNA clones Services for PDZK1P1
- GenScript Custom Purified and Recombinant Proteins Services for PDZK1P1
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for PDZK1P1
- VectorBuilder custom plasmid, inducible vectors for PDZK1P1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for PDZK1P1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for PDZK1P1
- Search GeneTex for Proteins for PDZK1P1
Sources for PDZK1P1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew