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Aliases for PDXDC2P-NPIPB14P Gene

Aliases for PDXDC2P-NPIPB14P Gene

  • Nuclear Pore Complex-Interacting Protein 3
  • Pyridoxal Dependent Decarboxylase Domain Containing 2, Pseudogene 5
  • PDXDC2P 5

External Ids for PDXDC2P-NPIPB14P Gene

Summaries for PDXDC2P-NPIPB14P Gene

Entrez Gene Summary for PDXDC2P-NPIPB14P Gene

  • This locus represents naturally-occurring readthrough transcription between two pseudogenes, PDXDC2P (pyridoxal dependent decarboxylase domain containing 2, pseudogene) and NPIPB14P (nuclear pore complex interacting protein family, member B14, pseudogene). The individual pseudogene loci are not curated as transcribed regions. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Feb 2017]

GeneCards Summary for PDXDC2P-NPIPB14P Gene

PDXDC2P-NPIPB14P (Nuclear Pore Complex-Interacting Protein) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDXDC2P-NPIPB14P Gene

Genomics for PDXDC2P-NPIPB14P Gene

Regulatory Elements for PDXDC2P-NPIPB14P Gene

Enhancers for PDXDC2P-NPIPB14P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G070025 1.5 FANTOM5 Ensembl ENCODE dbSUPER 30.1 +39.7 39711 1.7 JUN NR2F1 ARID4B PPARG NR2F2 RARA NFIL3 PRDM6 HMBOX1 NR2F6 CLEC18A NPIPB14P PDXDC2P-NPIPB14P WWP2 EXOSC6 MIR1972-2
GH16G070379 1.4 Ensembl ENCODE 27.1 -314.8 -314788 3.3 AGO1 ZFP64 DMAP1 YY1 SLC30A9 SP3 NFYC MEF2D SSRP1 GLIS1 PDPR LOC400541 SF3B3 PDXDC2P-NPIPB14P NONOP1 PDXDC2P NPIPB14P LOC100506083 EXOSC6 SMG1P7
GH16G069721 1.7 FANTOM5 ENCODE dbSUPER 21.6 +340.7 340697 7.2 CREB3L1 MLX DMAP1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SSRP1 RCOR2 SF3B3 NONOP1 CHTF8 PDPR NPIPB14P PDXDC2P-NPIPB14P NIP7 PDXDC2P EXOSC6 NOB1
GH16G069070 1.6 Ensembl ENCODE dbSUPER 22.6 +993.2 993244 3.6 PKNOX1 AGO1 ARID4B SIN3A FEZF1 FOS DEK SP3 MCM3 REST NONOP1 CHTF8 PDXDC2P-NPIPB14P ENSG00000263276 NOB1 PDXDC2P NIP7 NPIPB14P ENSG00000259797 ENSG00000262514
GH16G070522 1.1 ENCODE 30.5 -458.1 -458119 3.5 PKNOX1 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 PDXDC2P-NPIPB14P PDXDC2P NONOP1 SF3B3 PDPR SMG1P7 NPIPB14P COG4 SNORD111B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PDXDC2P-NPIPB14P on UCSC Golden Path with GeneCards custom track

Genomic Location for PDXDC2P-NPIPB14P Gene

Chromosome:
16
Start:
69,976,297 bp from pter
End:
70,065,948 bp from pter
Size:
89,652 bases
Orientation:
Minus strand

Genomic View for PDXDC2P-NPIPB14P Gene

Genes around PDXDC2P-NPIPB14P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDXDC2P-NPIPB14P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDXDC2P-NPIPB14P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDXDC2P-NPIPB14P Gene

Proteins for PDXDC2P-NPIPB14P Gene

Post-translational modifications for PDXDC2P-NPIPB14P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PDXDC2P-NPIPB14P Gene

Domains & Families for PDXDC2P-NPIPB14P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PDXDC2P-NPIPB14P Gene

Function for PDXDC2P-NPIPB14P Gene

Gene Ontology (GO) - Molecular Function for PDXDC2P-NPIPB14P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016831 carboxy-lyase activity IEA --
GO:0030170 pyridoxal phosphate binding IEA --
genes like me logo Genes that share ontologies with PDXDC2P-NPIPB14P: view

Phenotypes for PDXDC2P-NPIPB14P Gene

GenomeRNAi human phenotypes for PDXDC2P-NPIPB14P:
genes like me logo Genes that share phenotypes with PDXDC2P-NPIPB14P: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PDXDC2P-NPIPB14P Gene

Localization for PDXDC2P-NPIPB14P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PDXDC2P-NPIPB14P Gene

Pathways & Interactions for PDXDC2P-NPIPB14P Gene

SuperPathways for PDXDC2P-NPIPB14P Gene

No Data Available

Interacting Proteins for PDXDC2P-NPIPB14P Gene

Gene Ontology (GO) - Biological Process for PDXDC2P-NPIPB14P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019752 carboxylic acid metabolic process IEA --
genes like me logo Genes that share ontologies with PDXDC2P-NPIPB14P: view

No data available for Pathways by source and SIGNOR curated interactions for PDXDC2P-NPIPB14P Gene

Drugs & Compounds for PDXDC2P-NPIPB14P Gene

No Compound Related Data Available

Transcripts for PDXDC2P-NPIPB14P Gene

mRNA/cDNA for PDXDC2P-NPIPB14P Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PDXDC2P-NPIPB14P Gene

No ASD Table

Relevant External Links for PDXDC2P-NPIPB14P Gene

GeneLoc Exon Structure for
PDXDC2P-NPIPB14P

Expression for PDXDC2P-NPIPB14P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDXDC2P-NPIPB14P Gene

Orthologs for PDXDC2P-NPIPB14P Gene

Evolution for PDXDC2P-NPIPB14P Gene

ENSEMBL:
Gene Tree for PDXDC2P-NPIPB14P (if available)
TreeFam:
Gene Tree for PDXDC2P-NPIPB14P (if available)

No data available for Orthologs for PDXDC2P-NPIPB14P Gene

Paralogs for PDXDC2P-NPIPB14P Gene

No data available for Paralogs for PDXDC2P-NPIPB14P Gene

Variants for PDXDC2P-NPIPB14P Gene

Sequence variations from dbSNP and Humsavar for PDXDC2P-NPIPB14P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000061114 -- 69,988,310(+) GCTGA(A/G)GCAGA intron-variant
rs1000110030 -- 70,065,267(+) GGTGA(A/T)TCCCA intron-variant
rs1000121406 -- 70,065,481(+) CAAGG(G/T)CGGCC intron-variant
rs1000270727 -- 70,059,801(+) TTTCT(C/T)ATCTA intron-variant
rs1000288324 -- 70,053,339(+) CAGTG(A/G)GCAGA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for PDXDC2P-NPIPB14P Gene

Disorders for PDXDC2P-NPIPB14P Gene

No disorders were found for PDXDC2P-NPIPB14P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PDXDC2P-NPIPB14P Gene

Publications for PDXDC2P-NPIPB14P Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  2. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry J.R. … Ong K.K. (Nature 2014) 3 64
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  4. Proteome-wide Identification of HtrA2/Omi Substrates. (PMID: 17266347) Vande Walle L. … Vandenabeele P. (J. Proteome Res. 2007) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for PDXDC2P-NPIPB14P Gene

Sources for PDXDC2P-NPIPB14P Gene

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