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Aliases for PDP2 Gene

Aliases for PDP2 Gene

  • Pyruvate Dehyrogenase Phosphatase Catalytic Subunit 2 2 3 5
  • [Pyruvate Dehydrogenase (Acetyl-Transferring)]-Phosphatase 2 3
  • Pyruvate Dehydrogenase Phosphatase Catalytic Subunit 2 3 4
  • EC 4 63
  • PDPC 2 3 4
  • Protein Phosphatase 2C, Magnesium-Dependent, Catalytic Subunit 2 3
  • Pyruvate Dehydrogenase Phosphatase, Catalytic Subunit 2 3
  • Pyruvate Dehydrogenase Phosphatase Isoenzyme 2 3
  • Protein Phosphatase, Mg2+/Mn2+ Dependent 2B 3
  • Protein Phosphatase 2C 2
  • Mg2+/Mn2+ Dependent 2B 2
  • Protein Phosphatase 2
  • Magnesium-Dependent 2
  • Catalytic Subunit 2 2
  • KIAA1348 4
  • EC 3.1.3 63
  • PPM2C2 3
  • PPM2B 3
  • PDP 2 4

External Ids for PDP2 Gene

Previous GeneCards Identifiers for PDP2 Gene

  • GC16P066690
  • GC16P065471
  • GC16P066914
  • GC16P052788

Summaries for PDP2 Gene

GeneCards Summary for PDP2 Gene

PDP2 (Pyruvate Dehyrogenase Phosphatase Catalytic Subunit 2) is a Protein Coding gene. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. and Pyruvate metabolism and Citric Acid (TCA) cycle. GO annotations related to this gene include protein serine/threonine phosphatase activity and magnesium-dependent protein serine/threonine phosphatase activity. An important paralog of this gene is PDP1.

UniProtKB/Swiss-Prot for PDP2 Gene

  • Catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDP2 Gene

Genomics for PDP2 Gene

Regulatory Elements for PDP2 Gene

Enhancers for PDP2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around PDP2 on UCSC Golden Path with GeneCards custom track

Promoters for PDP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PDP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for PDP2 Gene

66,878,589 bp from pter
66,895,754 bp from pter
17,166 bases
Plus strand

Genomic View for PDP2 Gene

Genes around PDP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDP2 Gene

Proteins for PDP2 Gene

  • Protein details for PDP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 2, mitochondrial
    Protein Accession:
    Secondary Accessions:
    • A8K924

    Protein attributes for PDP2 Gene

    529 amino acids
    Molecular mass:
    59978 Da
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Quaternary structure:
    • Heterodimer of a catalytic subunit and a FAD protein of unknown function.
    • Sequence=BAA92586.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for PDP2 Gene

Proteomics data for PDP2 Gene at MOPED

Selected DME Specific Peptides for PDP2 Gene

Post-translational modifications for PDP2 Gene

  • Ubiquitination at Lys 438 and Lys 459
  • Modification sites at PhosphoSitePlus

Other Protein References for PDP2 Gene

Domains & Families for PDP2 Gene

Gene Families for PDP2 Gene

Protein Domains for PDP2 Gene

Suggested Antigen Peptide Sequences for PDP2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 PPM-type phosphatase domain.
  • Belongs to the PP2C family.
  • Contains 1 PPM-type phosphatase domain.
  • Belongs to the PP2C family.
genes like me logo Genes that share domains with PDP2: view

Function for PDP2 Gene

Molecular function for PDP2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
[Pyruvate dehydrogenase (acetyl-transferring)] phosphate + H(2)O = [pyruvate dehydrogenase (acetyl-transferring)] + phosphate.
UniProtKB/Swiss-Prot Function:
Catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex.

Enzyme Numbers (IUBMB) for PDP2 Gene

Gene Ontology (GO) - Molecular Function for PDP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004722 protein serine/threonine phosphatase activity IEA --
genes like me logo Genes that share ontologies with PDP2: view
genes like me logo Genes that share phenotypes with PDP2: view

Animal Model Products

CRISPR Products

miRNA for PDP2 Gene

miRTarBase miRNAs that target PDP2

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PDP2 Gene

Localization for PDP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PDP2 Gene

Mitochondrion matrix.

Subcellular locations from

Jensen Localization Image for PDP2 Gene COMPARTMENTS Subcellular localization image for PDP2 gene
Compartment Confidence
mitochondrion 5
cytosol 2
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for PDP2 Gene

Pathways & Interactions for PDP2 Gene

genes like me logo Genes that share pathways with PDP2: view

SIGNOR curated interactions for PDP2 Gene


Gene Ontology (GO) - Biological Process for PDP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010510 regulation of acetyl-CoA biosynthetic process from pyruvate TAS --
GO:0044237 cellular metabolic process TAS --
genes like me logo Genes that share ontologies with PDP2: view

Drugs & Compounds for PDP2 Gene

(2) Drugs for PDP2 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
FAD Approved Pharma 0
Magnesium Nutra 0

(4) Additional Compounds for PDP2 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Hydrogen phosphate
  • Biphosphate
  • Hydrogen orthophosphate
  • Hydrogen phosphate
  • Hydrogen phosphate anion
  • Hydrogen phosphate dianion
  • NFB Orthophosphate
  • O-Phosphoric acid
  • Ortho-phosphate
  • Orthophosphate (PO43-)
  • Orthophosphate(3-)
phosphoric acid
  • Acide phosphorique (FRENCH)
  • Acido fosforico [Italian]
  • Acidum phosphoricum
  • Diphosphate tetrasodium
  • Fosforzuuroplossingen [Dutch]
  • Dihydrogen oxide
  • Steam
genes like me logo Genes that share compounds with PDP2: view

Transcripts for PDP2 Gene

Unigene Clusters for PDP2 Gene

Pyruvate dehyrogenase phosphatase catalytic subunit 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PDP2 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g · 1h · 1i ^ 2 ^ 3a · 3b · 3c · 3d · 3e · 3f · 3g
SP2: - - - -
SP3: - - -
SP4: - - - - -
SP5: -
SP6: - -

Relevant External Links for PDP2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PDP2 Gene

mRNA expression in normal human tissues for PDP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PDP2 Gene

This gene is overexpressed in Lung (43.7) and Breast (24.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for PDP2 Gene

SOURCE GeneReport for Unigene cluster for PDP2 Gene Hs.632214

genes like me logo Genes that share expression patterns with PDP2: view

Protein tissue co-expression partners for PDP2 Gene

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PDP2 Gene

Orthologs for PDP2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PDP2 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia PDP2 35
  • 87.12 (n)
  • 87.5 (a)
PDP2 36
  • 86 (a)
(Canis familiaris)
Mammalia PDP2 35
  • 88.34 (n)
  • 88.47 (a)
PDP2 36
  • 88 (a)
(Mus musculus)
Mammalia Pdp2 35
  • 83.27 (n)
  • 85.74 (a)
Pdp2 16
Pdp2 36
  • 84 (a)
(Pan troglodytes)
Mammalia PDP2 35
  • 99.43 (n)
  • 99.81 (a)
PDP2 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Pdp2 35
  • 83.49 (n)
  • 83.93 (a)
(Monodelphis domestica)
Mammalia PDP2 36
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia PDP2 36
  • 67 (a)
(Gallus gallus)
Aves PDP2 35
  • 65.4 (n)
  • 66.1 (a)
PDP2 36
  • 65 (a)
(Anolis carolinensis)
Reptilia PDP2 36
  • 61 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia pdp2 35
  • 63.46 (n)
  • 59.81 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.17333 35
(Danio rerio)
Actinopterygii pdp2 35
  • 62.07 (n)
  • 60.22 (a)
pdp2 36
  • 52 (a)
fruit fly
(Drosophila melanogaster)
Insecta Pdp 36
  • 38 (a)
(Caenorhabditis elegans)
Secernentea pdp-1 36
  • 35 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACL083C 35
  • 46.63 (n)
  • 36.52 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C13706g 35
  • 45.27 (n)
  • 37.81 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PTC5 35
  • 46.34 (n)
  • 36.47 (a)
PTC5 36
  • 23 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU01767 35
  • 46.12 (n)
  • 36.51 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC10F6.17c 35
  • 45.7 (n)
  • 37.39 (a)
Species with no ortholog for PDP2:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PDP2 Gene

Gene Tree for PDP2 (if available)
Gene Tree for PDP2 (if available)

Paralogs for PDP2 Gene

Paralogs for PDP2 Gene

(2) SIMAP similar genes for PDP2 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with PDP2: view

Variants for PDP2 Gene

Sequence variations from dbSNP and Humsavar for PDP2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs3956601 -- 66,881,431(-) aaatt(A/T)aaAAA intron-variant
rs149156 -- 66,878,803(-) ATTCC(A/G)GTGAT upstream-variant-2KB
rs152169 -- 66,879,736(+) gagcc(C/T)ggcag upstream-variant-2KB
rs152170 -- 66,879,250(-) gtctc(A/G)ctctg upstream-variant-2KB
rs152171 -- 66,879,212(-) atctc(C/G)gctca upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PDP2 Gene

Variant ID Type Subtype PubMed ID
dgv2885n71 CNV Loss 21882294

Variation tolerance for PDP2 Gene

Residual Variation Intolerance Score: 12.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.08; 22.05% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for PDP2 Gene

Disorders for PDP2 Gene

Relevant External Links for PDP2

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for PDP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PDP2 Gene

Publications for PDP2 Gene

  1. Lower than expected desmosomal gene mutation prevalence in endurance athletes with complex ventricular arrhythmias of right ventricular origin. (PMID: 20525856) La Gerche A. … HeidbA1chel H. (Heart 2010) 3 48 67
  2. Isoenzymes of pyruvate dehydrogenase phosphatase. DNA-derived amino acid sequences, expression, and regulation. (PMID: 9651365) Huang B. … Popov K.M. (J. Biol. Chem. 1998) 2 3
  3. KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and lysosome-mediated degradation. (PMID: 25582440) Hong J.H. … Raught B. (Mol. Cell Proteomics 2015) 3
  4. Crystallization and preliminary crystallographic studies of the catalytic subunits of human pyruvate dehydrogenase phosphatase isoforms 1 and 2. (PMID: 20208177) Kato J. … Kato M. (Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2010) 3
  5. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3

Products for PDP2 Gene

Sources for PDP2 Gene