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Aliases for PDLIM2 Gene

Aliases for PDLIM2 Gene

  • PDZ And LIM Domain 2 2 3 5
  • Mystique 2 3
  • PDZ And LIM Domain Protein 2 3
  • PDZ-LIM Protein Mystique 4
  • SLIM 3

External Ids for PDLIM2 Gene

Previous GeneCards Identifiers for PDLIM2 Gene

  • GC00U990854
  • GC08P022788
  • GC08P022256
  • GC08P022458
  • GC08P022492
  • GC08P022435
  • GC08P020978

Summaries for PDLIM2 Gene

Entrez Gene Summary for PDLIM2 Gene

  • This gene encodes a member of the ALP subfamily of PDZ-LIM domain proteins. The encoded protein suppresses anchorage-dependent growth and promotes cell migration and adhesion through interactions with the actin cytoskeleton via the PDZ domain. The encoded protein is also a putative tumor suppressor protein, and decreased expression of this gene is associated with several malignancies including breast cancer and adult T-cell leukemia. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for PDLIM2 Gene

PDLIM2 (PDZ And LIM Domain 2) is a Protein Coding gene. Diseases associated with PDLIM2 include Cogan-Reese Syndrome. Among its related pathways are NF-kappaB Signaling and Cytoskeletal Signaling. GO annotations related to this gene include alpha-actinin binding and filamin binding. An important paralog of this gene is PDLIM1.

UniProtKB/Swiss-Prot for PDLIM2 Gene

  • Probable adapter protein located at the actin cytoskeleton that promotes cell attachment. Necessary for the migratory capacity of epithelial cells. Overexpression enhances cell adhesion to collagen and fibronectin and suppresses anchorage independent growth. May contribute to tumor cell migratory capacity.

Gene Wiki entry for PDLIM2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDLIM2 Gene

Genomics for PDLIM2 Gene

Regulatory Elements for PDLIM2 Gene

Enhancers for PDLIM2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G022439 2 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -133.6 -133614 10.2 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT ZFP64 ARID4B SIN3A ZNF2 ENSG00000253200 PPP3CC C8orf58 SORBS3 POLR3D LOC100507071 BIN3 ENSG00000251034 PDLIM2 ENSG00000248235
GH08G022363 2 FANTOM5 Ensembl ENCODE dbSUPER 10 -210.6 -210637 8.3 HDGF HNRNPUL1 FOXA2 PKNOX1 MLX CREB3L1 ARNT ZFP64 SIN3A ARID4B PIWIL2 PPP3CC SLC39A14 PDLIM2 ENSG00000248235 RNU6-336P ENSG00000253616 BTF3P3 POLR3D DMTN
GH08G022545 1.7 FANTOM5 ENCODE dbSUPER 11.4 -28.1 -28096 10.0 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 FOS PAF1 PPP3CC SORBS3 RNU6-336P PDLIM2 ENSG00000248235 ENSG00000253200 SLC39A14 LGI3 DMTN PHYHIP
GH08G022537 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -37.9 -37850 6.0 PKNOX1 FEZF1 RAD21 ZNF335 ZNF121 ZSCAN5C FOS KLF7 PAF1 CEBPB PPP3CC RNU6-336P PDLIM2 ENSG00000248235 SORBS3 GC08M022506
GH08G022578 1.9 FANTOM5 Ensembl ENCODE dbSUPER 8.2 +6.4 6430 13.1 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 C8orf58 ENSG00000253200 BIN3 POLR3D PDLIM2 FGF17 CCAR2 ENSG00000248235
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PDLIM2 on UCSC Golden Path with GeneCards custom track

Promoters for PDLIM2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000222078 959 1801 FUS DMAP1 GLIS2 PCBP1 RELB ETV6 IKZF2 EGR2 SP5 GATAD2B

Genomic Location for PDLIM2 Gene

Chromosome:
8
Start:
22,578,279 bp from pter
End:
22,598,025 bp from pter
Size:
19,747 bases
Orientation:
Plus strand

Genomic View for PDLIM2 Gene

Genes around PDLIM2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PDLIM2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PDLIM2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDLIM2 Gene

Proteins for PDLIM2 Gene

  • Protein details for PDLIM2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96JY6-PDLI2_HUMAN
    Recommended name:
    PDZ and LIM domain protein 2
    Protein Accession:
    Q96JY6
    Secondary Accessions:
    • D3DSR5
    • J3KNH4
    • Q7Z584
    • Q86WM8
    • Q8WZ29
    • Q9H4L9
    • Q9H7I2

    Protein attributes for PDLIM2 Gene

    Size:
    352 amino acids
    Molecular mass:
    37459 Da
    Quaternary structure:
    • Interacts with alpha-actinins ACTN1 and ACTN4, FLNA and MYH9.
    SequenceCaution:
    • Sequence=AAG16633.1; Type=Frameshift; Positions=131; Evidence={ECO:0000305}; Sequence=AAL55747.1; Type=Frameshift; Positions=42, 207; Evidence={ECO:0000305}; Sequence=AAL65265.1; Type=Frameshift; Positions=237; Evidence={ECO:0000305}; Sequence=BAB15788.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for PDLIM2 Gene

    Alternative splice isoforms for PDLIM2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PDLIM2 Gene

Post-translational modifications for PDLIM2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for PDLIM2 (PDLIM2)
  • Abcam antibodies for PDLIM2

No data available for DME Specific Peptides for PDLIM2 Gene

Domains & Families for PDLIM2 Gene

Gene Families for PDLIM2 Gene

Protein Domains for PDLIM2 Gene

Suggested Antigen Peptide Sequences for PDLIM2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PDLIM2: view

No data available for UniProtKB/Swiss-Prot for PDLIM2 Gene

Function for PDLIM2 Gene

Molecular function for PDLIM2 Gene

UniProtKB/Swiss-Prot Function:
Probable adapter protein located at the actin cytoskeleton that promotes cell attachment. Necessary for the migratory capacity of epithelial cells. Overexpression enhances cell adhesion to collagen and fibronectin and suppresses anchorage independent growth. May contribute to tumor cell migratory capacity.

Gene Ontology (GO) - Molecular Function for PDLIM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 21044950
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with PDLIM2: view
genes like me logo Genes that share phenotypes with PDLIM2: view

Animal Models for PDLIM2 Gene

MGI Knock Outs for PDLIM2:

Animal Model Products

CRISPR Products

miRNA for PDLIM2 Gene

miRTarBase miRNAs that target PDLIM2

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PDLIM2 Gene

Localization for PDLIM2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PDLIM2 Gene

Cytoplasm. Nucleus. Note=May be partially nuclear.
Isoform 1: Cytoplasm, cytoskeleton. Note=Colocalizes with beta-1 integrin (ITGB1) and alpha-actinin but not with paxillin (PXN).
Isoform 2: Cytoplasm, cytoskeleton.
Isoform 3: Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PDLIM2 gene
Compartment Confidence
extracellular 5
cytoskeleton 5
nucleus 5

Gene Ontology (GO) - Cellular Components for PDLIM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with PDLIM2: view

Pathways & Interactions for PDLIM2 Gene

genes like me logo Genes that share pathways with PDLIM2: view

Pathways by source for PDLIM2 Gene

2 Cell Signaling Technology pathways for PDLIM2 Gene
1 GeneGo (Thomson Reuters) pathway for PDLIM2 Gene

Gene Ontology (GO) - Biological Process for PDLIM2 Gene

None

No data available for SIGNOR curated interactions for PDLIM2 Gene

Drugs & Compounds for PDLIM2 Gene

No Compound Related Data Available

Transcripts for PDLIM2 Gene

Unigene Clusters for PDLIM2 Gene

PDZ and LIM domain 2 (mystique):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PDLIM2 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b · 13c ^ 14 ^ 15a · 15b · 15c · 15d · 15e ^ 16
SP1: - - - - - -
SP2: - - - - - -
SP3: - - - - - - -
SP4: - - - - - -
SP5: - - - - - - - -
SP6: - - -
SP7: - - - -
SP8: - - - -
SP9: - - -
SP10: - -
SP11: - - - - - - - -
SP12:

Relevant External Links for PDLIM2 Gene

GeneLoc Exon Structure for
PDLIM2
ECgene alternative splicing isoforms for
PDLIM2

Expression for PDLIM2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PDLIM2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PDLIM2 Gene

This gene is overexpressed in Spleen (x8.3) and Whole Blood (x4.2).

Protein differential expression in normal tissues from HIPED for PDLIM2 Gene

This gene is overexpressed in Bone marrow stromal cell (34.2) and Peripheral blood mononuclear cells (9.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for PDLIM2 Gene



Protein tissue co-expression partners for PDLIM2 Gene

NURSA nuclear receptor signaling pathways regulating expression of PDLIM2 Gene:

PDLIM2

SOURCE GeneReport for Unigene cluster for PDLIM2 Gene:

Hs.632034

Evidence on tissue expression from TISSUES for PDLIM2 Gene

  • Nervous system(4.3)
  • Liver(4.2)
  • Spleen(4.2)
genes like me logo Genes that share expression patterns with PDLIM2: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for PDLIM2 Gene

Orthologs for PDLIM2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PDLIM2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PDLIM2 34 35
  • 99.45 (n)
dog
(Canis familiaris)
Mammalia PDLIM2 35
  • 83 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PDLIM2 34 35
  • 82.75 (n)
mouse
(Mus musculus)
Mammalia Pdlim2 34 16 35
  • 79.15 (n)
rat
(Rattus norvegicus)
Mammalia Pdlim2 34
  • 78.48 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia PDLIM2 35
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PDLIM2 35
  • 57 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PDLIM2 35
  • 52 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii pdlim2 34 35
  • 50.74 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3932 35
  • 24 (a)
OneToOne
Species where no ortholog for PDLIM2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PDLIM2 Gene

ENSEMBL:
Gene Tree for PDLIM2 (if available)
TreeFam:
Gene Tree for PDLIM2 (if available)

Paralogs for PDLIM2 Gene

Paralogs for PDLIM2 Gene

Pseudogenes.org Pseudogenes for PDLIM2 Gene

genes like me logo Genes that share paralogs with PDLIM2: view

Variants for PDLIM2 Gene

Sequence variations from dbSNP and Humsavar for PDLIM2 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000049085 -- 22,586,688(+) TGTTC(C/T)GCGAC intron-variant
rs1000238811 -- 22,594,771(+) TTGAT(C/T)TGGAG downstream-variant-500B, utr-variant-3-prime
rs1000292520 -- 22,591,196(+) CACTT(G/T)GAAAG intron-variant
rs1000352024 -- 22,596,576(+) CGTCT(A/G)TGTTC utr-variant-3-prime
rs1000411599 -- 22,589,448(+) TTCCC(C/T)GAGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PDLIM2 Gene

Variant ID Type Subtype PubMed ID
esv2736748 CNV deletion 23290073
esv2759604 CNV loss 17122850
esv3543216 CNV deletion 23714750
nsv1124328 CNV deletion 24896259
nsv951113 CNV deletion 24416366

Variation tolerance for PDLIM2 Gene

Gene Damage Index Score: 5.83; 73.85% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PDLIM2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PDLIM2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PDLIM2 Gene

Disorders for PDLIM2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PDLIM2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
cogan-reese syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for PDLIM2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PDLIM2
genes like me logo Genes that share disorders with PDLIM2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PDLIM2 Gene

Publications for PDLIM2 Gene

  1. Mystique is a new IGF-I regulated PDZ-LIM domain protein that promotes cell attachment and migration and suppresses anchorage independent growth. (PMID: 15659642) Loughran G. … O'connor R. (Mol. Biol. Cell 2005) 3 4 22 64
  2. Epigenetic repression of PDZ-LIM domain-containing protein 2: implications for the biology and treatment of breast cancer. (PMID: 20185823) Qu Z. … Xiao G. (J. Biol. Chem. 2010) 3 22 64
  3. Human T-cell leukemia virus type I-mediated repression of PDZ-LIM domain-containing protein 2 involves DNA methylation but independent of the viral oncoprotein tax. (PMID: 19794962) Yan P. … Xiao G. (Neoplasia 2009) 3 22 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for PDLIM2 Gene

Sources for PDLIM2 Gene

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