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Aliases for PDIA4 Gene

Aliases for PDIA4 Gene

  • Protein Disulfide Isomerase Family A, Member 4 2 3
  • Endoplasmic Reticulum Resident Protein 70 3 4
  • Endoplasmic Reticulum Resident Protein 72 3 4
  • Protein Disulfide Isomerase-Associated 4 2 3
  • ER Protein 70 3 4
  • ER Protein 72 3 4
  • EC 5.3.4.1 4 64
  • ERp-72 3 4
  • ERP70 3 4
  • ERP72 3 4
  • Protein Disulfide Isomerase Related Protein (Calcium-Binding Protein, Intestinal-Related) 3
  • Protein Disulfide-Isomerase A4 3

External Ids for PDIA4 Gene

Summaries for PDIA4 Gene

GeneCards Summary for PDIA4 Gene

PDIA4 (Protein Disulfide Isomerase Family A, Member 4) is a Protein Coding gene. Among its related pathways are Translational Control and Neuropathic Pain-Signaling in Dorsal Horn Neurons. GO annotations related to this gene include electron carrier activity and protein disulfide isomerase activity. An important paralog of this gene is PDIA3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDIA4 Gene

Genomics for PDIA4 Gene

Genomic Location for PDIA4 Gene

Start:
149,003,051 bp from pter
End:
149,028,690 bp from pter
Size:
25,640 bases
Orientation:
Minus strand

Genomic View for PDIA4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PDIA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDIA4 Gene

Regulatory Elements for PDIA4 Gene

Proteins for PDIA4 Gene

  • Protein details for PDIA4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P13667-PDIA4_HUMAN
    Recommended name:
    Protein disulfide-isomerase A4
    Protein Accession:
    P13667
    Secondary Accessions:
    • A8K4K6
    • Q549T6

    Protein attributes for PDIA4 Gene

    Size:
    645 amino acids
    Molecular mass:
    72932 Da
    Quaternary structure:
    • Part of a large chaperone multiprotein complex comprising DNAJB11, HSP90B1, HSPA5, HYOU, PDIA2, PDIA4, PDIA6, PPIB, SDF2L1, UGT1A1 and very small amounts of ERP29, but not, or at very low levels, CALR nor CANX

    Three dimensional structures from OCA and Proteopedia for PDIA4 Gene

neXtProt entry for PDIA4 Gene

Proteomics data for PDIA4 Gene at MOPED

Post-translational modifications for PDIA4 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys103, Lys141, Lys256, Lys294, and Lys391
  • Glycosylation at Thr503

Other Protein References for PDIA4 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for PDIA4 Gene

Gene Families for PDIA4 Gene

HGNC:
  • PDI :Protein disulfide isomerases

UniProtKB/Swiss-Prot:

PDIA4_HUMAN
Domain:
  • Contains 3 thioredoxin domains.:
    • P13667
Family:
  • Belongs to the protein disulfide isomerase family.:
    • P13667
genes like me logo Genes that share domains with PDIA4: view

Function for PDIA4 Gene

Molecular function for PDIA4 Gene

UniProtKB/Swiss-Prot CatalyticActivity: Catalyzes the rearrangement of -S-S- bonds in proteins

Enzyme Numbers (IUBMB) for PDIA4 Gene

Gene Ontology (GO) - Molecular Function for PDIA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003756 protein disulfide isomerase activity ISS --
GO:0005509 calcium ion binding --
GO:0005515 protein binding IPI 22190034
GO:0016853 isomerase activity --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with PDIA4: view

Phenotypes for PDIA4 Gene

GenomeRNAi human phenotypes for PDIA4:
genes like me logo Genes that share phenotypes with PDIA4: view

miRNA for PDIA4 Gene

miRTarBase miRNAs that target PDIA4

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for PDIA4 Gene

Localization for PDIA4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PDIA4 Gene

Endoplasmic reticulum lumen. Melanosome. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PDIA4 Gene COMPARTMENTS Subcellular localization image for PDIA4 gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 2

Gene Ontology (GO) - Cellular Components for PDIA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IBA --
GO:0005788 endoplasmic reticulum lumen IEA --
GO:0009986 cell surface IDA 19995400
GO:0042470 melanosome IEA --
genes like me logo Genes that share ontologies with PDIA4: view

Pathways for PDIA4 Gene

genes like me logo Genes that share pathways with PDIA4: view

Pathways by source for PDIA4 Gene

1 Qiagen pathway for PDIA4 Gene
1 Cell Signaling Technology pathway for PDIA4 Gene

Gene Ontology (GO) - Biological Process for PDIA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding IBA --
GO:0009306 protein secretion TAS 2295602
GO:0034976 response to endoplasmic reticulum stress IBA --
GO:0045454 cell redox homeostasis IEA --
GO:0061077 chaperone-mediated protein folding ISS --
genes like me logo Genes that share ontologies with PDIA4: view

Compounds for PDIA4 Gene

(5) Novoseek inferred chemical compound relationships for PDIA4 Gene

Compound -log(P) Hits PubMed IDs
sucrose 25 1
atp 23.7 4
arginine 5.39 1
glucose 0 2
calcium 0 1
genes like me logo Genes that share compounds with PDIA4: view

Transcripts for PDIA4 Gene

mRNA/cDNA for PDIA4 Gene

Unigene Clusters for PDIA4 Gene

Protein disulfide isomerase family A, member 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PDIA4 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10a · 10b
SP1: -
SP2: -
SP3: - -
SP4: -
SP5: -
SP6:

Relevant External Links for PDIA4 Gene

GeneLoc Exon Structure for
PDIA4
ECgene alternative splicing isoforms for
PDIA4

Expression for PDIA4 Gene

mRNA expression in normal human tissues for PDIA4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PDIA4 Gene

This gene is overexpressed in Liver (7.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PDIA4 Gene

SOURCE GeneReport for Unigene cluster for PDIA4 Gene Hs.93659

genes like me logo Genes that share expressions with PDIA4: view

Orthologs for PDIA4 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PDIA4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PDIA4 36
  • 99.28 (n)
  • 98.91 (a)
PDIA4 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ERP70 37
  • 87 (a)
OneToOne
PDIA4 36
  • 86.31 (n)
  • 86.94 (a)
dog
(Canis familiaris)
Mammalia PDIA4 36
  • 85.1 (n)
  • 84.89 (a)
PDIA4 37
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pdia4 36
  • 86.27 (n)
  • 88.3 (a)
Pdia4 16
Pdia4 37
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PDIA4 37
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PDIA4 37
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pdia4 36
  • 85.38 (n)
  • 87.09 (a)
chicken
(Gallus gallus)
Aves PDIA4 36
  • 75.06 (n)
  • 82.36 (a)
PDIA4 37
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PDIA4 37
  • 77 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.5570 36
tropical clawed frog
(Silurana tropicalis)
Amphibia pdia4 36
  • 69.87 (n)
  • 75.3 (a)
Str.16310 36
zebrafish
(Danio rerio)
Actinopterygii pdia4 36
  • 70.55 (n)
  • 76.2 (a)
pdia4 37
  • 73 (a)
OneToOne
wufd20c07 36
worm
(Caenorhabditis elegans)
Secernentea C14B9.2 36
  • 54.99 (n)
  • 50 (a)
C14B9.2 37
  • 47 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes EUG1 37
  • 25 (a)
ManyToMany
PDI1 37
  • 29 (a)
ManyToMany
PDI1 39
thale cress
(Arabidopsis thaliana)
eudicotyledons PDIL1-2 36
  • 49.92 (n)
  • 42.01 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.3992 36
rice
(Oryza sativa)
Liliopsida Os.10985 36
Os11g0199200 36
  • 51.84 (n)
  • 40.41 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4873 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.373 37
  • 57 (a)
OneToOne
Species with no ortholog for PDIA4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PDIA4 Gene

ENSEMBL:
Gene Tree for PDIA4 (if available)
TreeFam:
Gene Tree for PDIA4 (if available)

Paralogs for PDIA4 Gene

Paralogs for PDIA4 Gene

Selected SIMAP similar genes for PDIA4 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with PDIA4: view

Variants for PDIA4 Gene

Sequence variations from dbSNP and Humsavar for PDIA4 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs9065 -- 149,003,757(-) CAGAC(A/C/G)CCCTG utr-variant-3-prime
rs718411 -- 149,010,044(+) GGATG(A/C/G)GGGGG intron-variant
rs728451 -- 149,007,068(+) TGGAA(A/G)GAAGT intron-variant
rs1020940 -- 149,017,719(+) ttatc(A/G)aaata intron-variant
rs1052549 -- 149,003,450(-) CCTTT(G/T)CCAAA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for PDIA4 Gene

Variant ID Type Subtype PubMed ID
nsv528358 CNV Loss 19592680
nsv889402 CNV Loss 21882294

Relevant External Links for PDIA4 Gene

HapMap Linkage Disequilibrium report
PDIA4
Human Gene Mutation Database (HGMD)
PDIA4

Disorders for PDIA4 Gene

(1) Novoseek inferred disease relationships for PDIA4 Gene

Disease -log(P) Hits PubMed IDs
shock 9.56 1

Relevant External Links for PDIA4

Genetic Association Database (GAD)
PDIA4
Human Genome Epidemiology (HuGE) Navigator
PDIA4
genes like me logo Genes that share disorders with PDIA4: view

No data available for UniProtKB/Swiss-Prot for PDIA4 Gene

Publications for PDIA4 Gene

  1. Human deoxycytidine kinase. Sequence of cDNA clones and analysis of expression in cell lines with and without enzyme activity. (PMID: 2002068) Huang S.H. … Holcenberg J. (J. Biol. Chem. 1991) 2 3 4
  2. Human deoxycytidine kinase. Sequence of cDNA clones and analysis of expression in cell lines with and without enzyme activity. (PMID: 2549034) Huang S.-H. … Holcenberg J.S. (J. Biol. Chem. 1989) 2 3 4
  3. A possible biochemical link between NADPH oxidase (Nox) 1 redox-signalling and ERp72. (PMID: 18620548) Chen W. … Kamata T. (Biochem. J. 2008) 3 23
  4. A novel von Willebrand disease-causing mutation (Arg273Trp) in the von Willebrand factor propeptide that results in defective multimerization and secretion. (PMID: 10887119) Allen S. … Daly M.E. (Blood 2000) 3 23
  5. A subset of chaperones and folding enzymes form multiprotein complexes in endoplasmic reticulum to bind nascent proteins. (PMID: 12475965) Meunier L. … Hendershot L.M. (Mol. Biol. Cell 2002) 3 4

Products for PDIA4 Gene

Sources for PDIA4 Gene

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