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Aliases for PDGFRL Gene

Aliases for PDGFRL Gene

  • Platelet-Derived Growth Factor Receptor-Like 2 3
  • PDGF Receptor Beta-Like Tumor Suppressor 3 4
  • PDGFR-Like Protein 3 4
  • PRLTS 3 4
  • Platelet-Derived Growth Factor-Beta-Like Tumor Suppressor 3
  • PDGRL 3

External Ids for PDGFRL Gene

Previous GeneCards Identifiers for PDGFRL Gene

  • GC08P017327
  • GC08P017514
  • GC08P017444
  • GC08P017478
  • GC08P017435
  • GC08P017436
  • GC08P015978

Summaries for PDGFRL Gene

Entrez Gene Summary for PDGFRL Gene

  • This gene encodes a protein with significant sequence similarity to the ligand binding domain of platelet-derived growth factor receptor beta. Mutations in this gene, or deletion of a chromosomal segment containing this gene, are associated with sporadic hepatocellular carcinomas, colorectal cancers, and non-small cell lung cancers. This suggests this gene product may function as a tumor suppressor. [provided by RefSeq, Jul 2008]

GeneCards Summary for PDGFRL Gene

PDGFRL (Platelet-Derived Growth Factor Receptor-Like) is a Protein Coding gene. Diseases associated with PDGFRL include colorectal cancer and hepatocellular carcinoma. GO annotations related to this gene include platelet activating factor receptor activity and platelet-derived growth factor beta-receptor activity.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDGFRL Gene

Genomics for PDGFRL Gene

Regulatory Elements for PDGFRL Gene

Genomic Location for PDGFRL Gene

Chromosome:
8
Start:
17,576,433 bp from pter
End:
17,644,071 bp from pter
Size:
67,639 bases
Orientation:
Plus strand

Genomic View for PDGFRL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PDGFRL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDGFRL Gene

Proteins for PDGFRL Gene

  • Protein details for PDGFRL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15198-PGFRL_HUMAN
    Recommended name:
    Platelet-derived growth factor receptor-like protein
    Protein Accession:
    Q15198
    Secondary Accessions:
    • A8K085
    • Q6FH04

    Protein attributes for PDGFRL Gene

    Size:
    375 amino acids
    Molecular mass:
    41861 Da
    Quaternary structure:
    • Forms a complex composed of PDGFRL, TNK2 and GRB2

neXtProt entry for PDGFRL Gene

Proteomics data for PDGFRL Gene at MOPED

Post-translational modifications for PDGFRL Gene

  • Glycosylation at Asn 132 and Asn 219
  • Modification sites at PhosphoSitePlus

Other Protein References for PDGFRL Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for PDGFRL Gene

Domains & Families for PDGFRL Gene

Protein Domains for PDGFRL Gene

Suggested Antigen Peptide Sequences for PDGFRL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15198

UniProtKB/Swiss-Prot:

PGFRL_HUMAN :
  • Contains 2 Ig-like C2-type (immunoglobulin-like) domains.
Domain:
  • Contains 2 Ig-like C2-type (immunoglobulin-like) domains.
genes like me logo Genes that share domains with PDGFRL: view

Function for PDGFRL Gene

Molecular function for PDGFRL Gene

GENATLAS Biochemistry:
platelet-derived growth factor receptor-like

Gene Ontology (GO) - Molecular Function for PDGFRL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004992 platelet activating factor receptor activity TAS 7898930
GO:0005019 platelet-derived growth factor beta-receptor activity TAS 7898930
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with PDGFRL: view
genes like me logo Genes that share phenotypes with PDGFRL: view

Animal Model Products

miRNA for PDGFRL Gene

miRTarBase miRNAs that target PDGFRL

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PDGFRL

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for PDGFRL Gene

Localization for PDGFRL Gene

Subcellular locations from UniProtKB/Swiss-Prot for PDGFRL Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PDGFRL Gene COMPARTMENTS Subcellular localization image for PDGFRL gene
Compartment Confidence
extracellular 3
golgi apparatus 2
nucleus 2

Gene Ontology (GO) - Cellular Components for PDGFRL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with PDGFRL: view

Pathways & Interactions for PDGFRL Gene

SuperPathways for PDGFRL Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for PDGFRL Gene

Gene Ontology (GO) - Biological Process for PDGFRL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway TAS 7898930
GO:0008150 biological_process ND --
GO:0035791 platelet-derived growth factor receptor-beta signaling pathway TAS 7898930
genes like me logo Genes that share ontologies with PDGFRL: view

No data available for Pathways by source and SIGNOR curated interactions for PDGFRL Gene

Drugs & Compounds for PDGFRL Gene

(2) Drugs for PDGFRL Gene - From: ApexBio and NovoSeek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Crenolanib (CP-868596) Pharma PDGFR-β inhibitor,potent and selective 0
tyrosine Nutra 547
genes like me logo Genes that share compounds with PDGFRL: view

Transcripts for PDGFRL Gene

mRNA/cDNA for PDGFRL Gene

Unigene Clusters for PDGFRL Gene

Platelet-derived growth factor receptor-like:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PDGFRL

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PDGFRL Gene

No ASD Table

Relevant External Links for PDGFRL Gene

GeneLoc Exon Structure for
PDGFRL
ECgene alternative splicing isoforms for
PDGFRL

Expression for PDGFRL Gene

mRNA expression in normal human tissues for PDGFRL Gene

mRNA differential expression in normal tissues according to GTEx for PDGFRL Gene

This gene is overexpressed in Nerve - Tibial (x6.4).

Protein differential expression in normal tissues from HIPED for PDGFRL Gene

This gene is overexpressed in Synovial fluid (47.9) and Placenta (21.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PDGFRL Gene



SOURCE GeneReport for Unigene cluster for PDGFRL Gene Hs.458573

mRNA Expression by UniProt/SwissProt for PDGFRL Gene

Q15198-PGFRL_HUMAN
Tissue specificity: Expressed in colon, lung and liver.
genes like me logo Genes that share expression patterns with PDGFRL: view

Protein tissue co-expression partners for PDGFRL Gene

Primer Products

In Situ Assay Products

Orthologs for PDGFRL Gene

This gene was present in the common ancestor of chordates.

Orthologs for PDGFRL Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PDGFRL 35
  • 86.04 (n)
  • 89.33 (a)
PDGFRL 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PDGFRL 35
  • 87.56 (n)
  • 89.07 (a)
PDGFRL 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pdgfrl 35
  • 84.09 (n)
  • 89.33 (a)
Pdgfrl 16
Pdgfrl 36
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PDGFRL 35
  • 98.93 (n)
  • 99.2 (a)
PDGFRL 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pdgfrl 35
  • 84.09 (n)
  • 90.4 (a)
oppossum
(Monodelphis domestica)
Mammalia PDGFRL 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PDGFRL 36
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves PDGFRL 35
  • 69.7 (n)
  • 68.45 (a)
PDGFRL 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PDGFRL 36
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia pdgfrl 35
  • 70.8 (n)
  • 71.43 (a)
Str.8504 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.23703 35
zebrafish
(Danio rerio)
Actinopterygii pdgfrl 35
  • 61.75 (n)
  • 57.38 (a)
zgc56104 35
pdgfrl 36
  • 57 (a)
OneToOne
Species with no ortholog for PDGFRL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PDGFRL Gene

ENSEMBL:
Gene Tree for PDGFRL (if available)
TreeFam:
Gene Tree for PDGFRL (if available)

Paralogs for PDGFRL Gene

No data available for Paralogs for PDGFRL Gene

Variants for PDGFRL Gene

Sequence variations from dbSNP and Humsavar for PDGFRL Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs4705 -- 17,642,714(+) GACTT(C/T)GAGAC synonymous-codon, reference
rs2229084 -- 17,628,773(+) CTCTA(C/T)GTGGC reference, synonymous-codon
rs2237819 -- 17,576,246(+) AGGAA(A/G)GAAAA upstream-variant-2KB
rs2237820 -- 17,605,295(+) CATGC(C/T)CCATA intron-variant
rs2237821 -- 17,605,363(+) AATAA(C/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PDGFRL Gene

Variant ID Type Subtype PubMed ID
nsv831246 CNV Gain 17160897
dgv2224e1 CNV Complex 17122850
esv34867 CNV Loss 17911159
nsv831247 CNV Gain 17160897
nsv890558 CNV Loss 21882294
esv989082 CNV Deletion 20482838
nsv8306 CNV Loss 18304495
essv13812 CNV CNV 17122850
esv2676506 CNV Deletion 23128226
nsv516988 CNV Loss 19592680
nsv818612 CNV Loss 17921354
nsv824559 CNV Loss 20364138
esv2670212 CNV Deletion 23128226
nsv516779 CNV Gain+Loss 19592680

Variation tolerance for PDGFRL Gene

Residual Variation Intolerance Score: 59.42% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.34; 53.70% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PDGFRL Gene

HapMap Linkage Disequilibrium report
PDGFRL
Human Gene Mutation Database (HGMD)
PDGFRL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PDGFRL Gene

Disorders for PDGFRL Gene

MalaCards: The human disease database

(4) MalaCards diseases for PDGFRL Gene - From: OMIM, ClinVar, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
colorectal cancer
  • colorectal cancer, somatic
hepatocellular carcinoma
  • hepatocellular carcinoma, somatic
perrault syndrome
  • gonadal dysgenesis xx type deafness
behcet's disease
  • adamantiades-behcet disease
- elite association

UniProtKB/Swiss-Prot

PGFRL_HUMAN
  • Colorectal cancer (CRC) [MIM:114500]: A complex disease characterized by malignant lesions arising from the inner wall of the large intestine (the colon) and the rectum. Genetic alterations are often associated with progression from premalignant lesion (adenoma) to invasive adenocarcinoma. Risk factors for cancer of the colon and rectum include colon polyps, long-standing ulcerative colitis, and genetic family history. {ECO:0000269 PubMed:7898930}. Note=The gene represented in this entry is involved in disease pathogenesis.
  • Note=A polymorphism in PDGFRL has been reported to be associated with susceptibility to Behcet disease (PubMed:22926996). Behcet disease is a complex multiple-system disorder characterized by recurrent oral ulcerations, recurrent genital ulcerations, typical skin lesions, and uveitis. Behcet disease also involves joints, blood vessels, musculoskeletal, neurological systems, and the gastrointestinal tract. {ECO:0000269 PubMed:22926996}.

Relevant External Links for PDGFRL

Genetic Association Database (GAD)
PDGFRL
Human Genome Epidemiology (HuGE) Navigator
PDGFRL
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PDGFRL
genes like me logo Genes that share disorders with PDGFRL: view

No data available for Genatlas for PDGFRL Gene

Publications for PDGFRL Gene

  1. The EGFR pathway as an example for genotype: phenotype correlation in tumor genes. (PMID: 19882270) Mogck U. … Stoehlmacher J. (Methods Mol. Biol. 2010) 23 67
  2. Expression and functional characterization of platelet-derived growth factor receptor-like gene. (PMID: 20333786) Guo F.J. … Li G.C. (World J. Gastroenterol. 2010) 23 67
  3. Membrane-initiated steroid action in breast and prostate cancer. (PMID: 18249430) Kampa M. … Castanas E. (Steroids 2008) 23 67
  4. Incorporation of biologic therapies in the management of gastroesophageal cancers. (PMID: 19343157) Jhawer M. … Shah M. (Gastrointest Cancer Res 2007) 23 67
  5. In situ identification of genes regulated specifically in fibroblasts of human basal cell carcinoma. (PMID: 17273163) Micke P. … Ostman A. (J. Invest. Dermatol. 2007) 23 67

Products for PDGFRL Gene

Sources for PDGFRL Gene

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