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Aliases & Descriptions for PDGFA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases PDGF-1 3 PDGF-A 1 , 2 PDGF1 1 , 2 , 3
Descriptions PDGF A-chain 2 PDGF subunit A 3 Platelet-derived growth factor A chain 3 platelet-derived growth factor alpha 2 platelet-derived growth factor alpha chain 2 platelet-derived growth factor alpha isoform 2 preproprotein 2 platelet-derived growth factor alpha polypeptide 2 , 3
Search outside databases for aliases for PDGFA genePrevious GC identifers: GC07U990063 GC07Mh00634
Summaries for PDGFA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PDGFA : The protein encoded by this gene is a member of the platelet-derived growth factor family. The fourmembers of this family are mitogenic factors for cells of mesenchymal origin and are characterizedby a motif of eight cysteines. This gene product can exist either as a homodimer or as aheterodimer with the platelet-derived growth factor beta polypeptide, where the dimers areconnected by disulfide bonds. Studies using knockout mice have shown cellular defects inoligodendrocytes, alveolar smooth muscle cells, and Leydig cells in the testis; knockout mice dieeither as embryos or shortly after birth. Two splice variants have been identified for this gene.[provided by RefSeq] UniProtKB/Swiss-Prot: PDGFA_HUMAN, P04085 Function : Platelet-derived growth factor is a potent mitogen for cells of mesenchymal origin.Binding of this growth factor to its affinity receptor elicits a variety of cellular responses. Itis released by platelets upon wounding and plays an important role in stimulating adjacent cellsto grow and thereby heals the wound
Gene Wiki entry for PDGFA
Genomic Location for PDGFA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PDGFA gene Entrez Gene cytogenetic band: 7p22 Ensembl cytogenetic band: 7p22.3 HGNC cytogenetic band: 7p22 PDGFA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M000503:
(about GC identifiers )
Start:
503,421 bp from pter
End:
526,459 bp from pter
Size:
23,039 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 598,080-620,018
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for PDGFA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PDGFA_HUMAN, P04085 (See
protein sequence )Recommended Name: Platelet-derived growth factor subunit A precursor Size : 211 amino acids; 24043 Da
Subunit : Antiparallel disulfide-linked dimer of non-identical (A and B) chains. Homodimers of A andB chains are implicated in transformation processes. Interacts with CSPG4
Subcellular location : Secreted
Miscellaneous : A-A and B-B, as well as A-B, dimers can bind to the PDGF receptor
Secondary accessions : B5BU73Alternative splicing : 2 isoforms : P04085-1 P04085-2
REFSEQ proteins (2 alternative transcripts):
NP_002598.4 NP_148983.1 ENSEMBL proteins: ENSP00000384673 ENSP00000345559 ENSP00000346508 ENSP00000383889 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for PDGFA: Assays for PDGFA:
Protein
Domains/ Families for PDGFA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P04085 ProtoNet protein and cluster: P04085
3 Blocks protein families : IPB000072 Platelet-derived growth factor (PDGF) IPB002400 Growth factor cystine knot superfamily signature IPB006782 Platelet-derived growth factor UniProtKB/Swiss-Prot: PDGFA_HUMAN, P04085 Domain : The long form contains a basic insert which acts as a cell retention signalSimilarity : Belongs to the PDGF/VEGF growth factor family
Gene Function for PDGFA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002607 Applied Biosystems Silencer ® siRNAs for PDGFA Sigma-Aldrich siRNA and siRNA Panels for PDGFA Sigma-Aldrich shRNA for PDGFA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002607                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002607                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002607  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002607 UniProtKB/Swiss-Prot: PDGFA_HUMAN, P04085 Function : Platelet-derived growth factor is a potent mitogen for cells of mesenchymal origin.Binding of this growth factor to its affinity receptor elicits a variety of cellular responses. Itis released by platelets upon wounding and plays an important role in stimulating adjacent cellsto grow and thereby heals the wound
Genatlas biochemistry entry for PDGFA :platelet-derived growth factor,alpha polypeptide,24kDa,potent mitogen for cells of mesenchymalorigin,also involved in transformation process
14 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Pdgfa) :5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
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Pathways & Interactions for PDGFA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/11 Sigma-Aldrich "Your Favorite Gene" Pathways for PDGFA (Your Favorite Gene powered by Ingenuity) (see all 11
) Gene Network CentralTM Interacting Genes and Proteins Network for PDGFA 5/121 Interacting proteins for PDGFA (ENSP00000346508 3 ) via UniProtKB, MINT, and/or STRING (see all 121
)About this table 5/13 Gene Ontology (GO) biological process terms (links to tree view) (see all 13
):
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Drugs & Compounds for PDGFA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for PDGFA
Sigma-Aldrich Small Molecules for PDGFA:Inhibitor
Compounds for PDGFA available from Tocris Bioscience Compound Action
CAS
number AG 213 EGFR/PDGFR-kinase inhibitor [122520-86-9] DMPQ dihydrochloride Potent, selective inhibitor of beta-type PDGFR [137206-97-4] AG 18 EGFR/PDGFR-kinase inhibitor [118409-57-7]
About this table 10/18 Novoseek chemical compound relationships for PDGFA gene (see all 18
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
ribonucleic acid
50.74
10
12153981 (1), 1651380 (1), 8697155 (1), 9482185 (1) (see all 8 )
lysophosphatidylcholine
43.46
3
10865829 (1), 10588364 (1), 7641323 (1)
pd 98,059
30.26
1
10446131 (1)
tyrosine
29.63
4
15061151 (1), 16689459 (1), 18084259 (1), 12651221 (1)
tgf beta1
27.69
4
15682418 (3), 15498125 (1)
cystine
26.86
1
8179329 (1)
procollagen
24.09
1
7806036 (1)
12-o-tetradecanoylphorbol 13-acetate
17.72
1
7869830 (1)
oligonucleotide
15.04
2
11823426 (1), 8780387 (1)
phosphatidylinositol
11.34
3
1310684 (2), 10446131 (1)
About this table
Transcripts for PDGFA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002607 Sigma-Aldrich siRNA and siRNA Panels for PDGFA Sigma-Aldrich shRNA for PDGFA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002607 NM_033023
REFSEQ mRNAs for PDGFA gene (2 alternative transcripts): NM_002607.5 NM_033023.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002607 NM_033023
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002607                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002607                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002607  
Additional cDNA sequence: AB451309.1 AB451439.1 AK292217.1 BC109246.1 X03795.1 X06374.1
2 DOTS entries : DT.95265064 DT.87077343
24/25 AceView cDNA sequences (see all 25
):H89357 BM702563 H89543 AA403247 CK820161 BM142229 AI276565 BM693414 AV729452 BQ002008 AI633869 AA770172 AI934350 BE503326 BQ001096 AW118697 AI625002 AI651133 BQ366054 X06374 NM_033023 BF094250 NM_002607 BM787770
highest scoring ESTs for PDGFA :X06374 AU118732 BF771483 BE315078 BE336646 BF771485 BG108753 BI010649 BQ315460 CN268067
Unigene Cluster for PDGFA: Platelet-derived growth factor alpha polypeptide Hs.535898 [show with all ESTs ] Unigene Representative Sequence: NM_002607 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000405692
ENST00000344323
ENST00000354513
ENST00000402802
Expression for PDGFA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PDGFA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PDGFA 1 / 2 / 3
6 probe-sets matching PDGFA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTATACCTACSOURCE GeneReport for Unigene cluster: Hs.535898 Expression variation in blood from EXPOLDB for PDGFA
Orthologs for PDGFA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PDGFA gene from 5/8 species (see all 8
)
About this table Species with no ortholog for PDGFA ENSEMBL Gene Tree for PDGFA Paralogs for PDGFA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for PDGFA gene PDGFB 2 LOC729619 2
SNPs/Variants for PDGFA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PDGFA (up to first 250kb)
Disorders & Mutations for PDGFA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 173430 10/62 Novoseek disease relationships for PDGFA gene (see all 62
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
glioblastoma
48.67
1
11322447 (1)
denys-drash syndrome
44.73
1
10586431 (1)
astrocytoma
41.49
3
7829210 (1), 11322447 (1)
medulloblastoma
41.14
2
8841077 (1), 11544480 (1)
atherosclerosis
39.99
4
11838000 (1), 18573494 (1), 15517943 (1), 9888867 (1)
atherosclerotic plaque
36.57
2
8653829 (1), 7914837 (1)
oligodendroglioma
35.15
2
9482185 (1), 11322447 (1)
tumors
34.35
57
15389255 (6), 8619189 (3), 7923179 (3), 17074177 (2) (see all 30 )
osteosarcoma
28.80
2
2156959 (1), 2016070 (1)
fibrosis idiopathic pulmonary
28.38
1
8520779 (1)
About this table Genetic Association Database: PDGFA Human Genome Epidemiology Navigator: PDGFA (1 document)
Medical News for PDGFA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for PDGFA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/355 PubMed articles for PDGFA gene (see all 355
): Platelet-derived growth factor A chain: confirmation of localization of PDGFA to chromosome 7p22 and description of an unusual minisatellite. (PubMed id 1612586) 1, 3, 4 Bonthron D.... Speleman F. (1992) DNA sequence variants of the platelet-derived growth factor A-chain gene. (PubMed id 11678848) 1, 3, 6 Baron R....Drazen J.M. (2001) The human platelet-derived growth factor alpha chain (PDGFA) gene maps to chromosome 7p22. (PubMed id 1505216) 1, 2, 3 Stenman G....Betsholtz C. (1992) High-affinity binding of basic fibroblast growth factor and platelet- derived growth factor-AA to the core protein of the NG2 proteoglycan. (PubMed id 10358027) 3, 4 Goretzki L.... Stallcup W.B. (1999) Nucleotide sequence of the 5' region of the human platelet-derived growth factor A-chain gene. (PubMed id 8486521) 3, 4 Takimoto Y.... Deuel T.F. (1993) Assignment of interchain disulfide bonds in platelet-derived growth factor (PDGF) and evidence for agonist activity of monomeric PDGF. (PubMed id 1317862) 3, 4 Andersson M.... Heldin C.-H. (1992) Isolation of a novel receptor cDNA establishes the existence of two PDGF receptor genes. (PubMed id 2536956) 2, 3 Matsui T....Aaronson S. (1989) Structural characterization of the human platelet-derived growth factor A-chain cDNA and gene: alternative exon usage predicts two different precursor proteins. (PubMed id 2832727) 3, 4 Rorsman F.... Betsholtz C. (1988) Platelet-derived growth factor A chain: gene structure, chromosomal location, and basis for alternative mRNA splicing. (PubMed id 3422746) 3, 4 Bonthron D.T.... Collins T. (1988) Alternative RNA splicing affects function of encoded platelet-derived growth factor A chain. (PubMed id 3614364) 3, 4 Collins T.... Orkin S.H. (1987)
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Genome Databases showing PDGFA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PDGFA
(According to HUGE )
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Specialized Databases showing PDGFA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for PDGFA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for PDGFA:
Tocris compounds for PDGFA
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