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Aliases for PDE4A Gene

Aliases for PDE4A Gene

  • Phosphodiesterase 4A, CAMP-Specific 2 3
  • DPDE2 3 4
  • PDE46 3 4
  • Phosphodiesterase 4A, CAMP-Specific (Dunce (Drosophila)-Homolog Phosphodiesterase E2) 2
  • Phosphodiesterase E2 Dunce Homolog (Drosophila) 2
  • Phosphodiesterase E2 Dunce Homolog, Drosophila 3
  • Phosphodiesterase 4A, CAMP-Specific (Dunce 3
  • Phosphodiesterase Isozyme 4 3
  • EC 3.1.4.17 63
  • EC 3.1.4.53 4
  • EC 3.1.4 63
  • PDE4 3

External Ids for PDE4A Gene

Previous HGNC Symbols for PDE4A Gene

  • DPDE2

Previous GeneCards Identifiers for PDE4A Gene

  • GC19P010663
  • GC19P010376
  • GC19P010527
  • GC19P010111

Summaries for PDE4A Gene

Entrez Gene Summary for PDE4A Gene

  • The protein encoded by this gene belongs to the cyclic nucleotide phosphodiesterase (PDE) family, and PDE4 subfamily. This PDE hydrolyzes the second messenger, cAMP, which is a regulator and mediator of a number of cellular responses to extracellular signals. Thus, by regulating the cellular concentration of cAMP, this protein plays a key role in many important physiological processes. Alternatively spliced transcript variants encoding different isoforms have been described for this gene.[provided by RefSeq, Jul 2011]

GeneCards Summary for PDE4A Gene

PDE4A (Phosphodiesterase 4A, CAMP-Specific) is a Protein Coding gene. Diseases associated with PDE4A include vasculogenic impotence and jejunoileitis. Among its related pathways are Signaling by GPCR and G Protein Signaling Pathways. GO annotations related to this gene include 3,5-cyclic-nucleotide phosphodiesterase activity and 3,5-cyclic-AMP phosphodiesterase activity. An important paralog of this gene is PDE7A.

UniProtKB/Swiss-Prot for PDE4A Gene

  • Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes.

Tocris Summary for PDE4A Gene

  • Phosphodiesterases (PDEs) are a family of phosphohydrolyases that catalyze the hydrolysis of 3' cyclic phosphate bonds in adenosine and/or guanine 3',5' cyclic monophosphate (cAMP and/or cGMP). PDEs regulate the second messengers by controlling their degradation.

Gene Wiki entry for PDE4A Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PDE4A Gene

Genomics for PDE4A Gene

Regulatory Elements for PDE4A Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for PDE4A Gene

Chromosome:
19
Start:
10,416,773 bp from pter
End:
10,469,631 bp from pter
Size:
52,859 bases
Orientation:
Plus strand

Genomic View for PDE4A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PDE4A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PDE4A Gene

Proteins for PDE4A Gene

  • Protein details for PDE4A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P27815-PDE4A_HUMAN
    Recommended name:
    cAMP-specific 3,5-cyclic phosphodiesterase 4A
    Protein Accession:
    P27815
    Secondary Accessions:
    • O75522
    • O76092
    • Q16255
    • Q16691
    • Q5DM53
    • Q6PMT2
    • Q8IVA7
    • Q8WUQ3
    • Q9H3H2

    Protein attributes for PDE4A Gene

    Size:
    886 amino acids
    Molecular mass:
    98143 Da
    Cofactor:
    Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; Note=Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions.;
    Quaternary structure:
    • Isoform 1 interacts with LYN. Isoform 2 and isoform 6 interact weakly with LYN. Isoform 1, isoform 2 and isoform 6 interact with ARRB2.

    Three dimensional structures from OCA and Proteopedia for PDE4A Gene

    Alternative splice isoforms for PDE4A Gene

neXtProt entry for PDE4A Gene

Proteomics data for PDE4A Gene at MOPED

Post-translational modifications for PDE4A Gene

  • Phosphorylation by MAPKAPK2 its activation through PKA phosphorylation (By similarity). Phosphorylated at Ser-686 and Ser-688 when expressed in S.frugiperda cells. Isoform 2 and isoform 7 are activated by phosphorylation at Ser-119 and Ser-123 respectively by PKA.
  • Proteolytically cleaved by caspase-3
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

Domains & Families for PDE4A Gene

Gene Families for PDE4A Gene

Protein Domains for PDE4A Gene

Graphical View of Domain Structure for InterPro Entry

P27815

UniProtKB/Swiss-Prot:

PDE4A_HUMAN :
  • Belongs to the cyclic nucleotide phosphodiesterase family. PDE4 subfamily.
Family:
  • Belongs to the cyclic nucleotide phosphodiesterase family. PDE4 subfamily.
genes like me logo Genes that share domains with PDE4A: view

Function for PDE4A Gene

Molecular function for PDE4A Gene

GENATLAS Biochemistry:
cAMP specific nucleotide phosphodiesterase class IV,A,with homology to Drosophila dunce gene,involved in signal transduction
UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=4.0 uM for cAMP (isoform 2) {ECO:0000269 PubMed:11306681, ECO:0000269 PubMed:15738310}; KM=3 uM for cAMP (isoform 6) {ECO:0000269 PubMed:11306681, ECO:0000269 PubMed:15738310};
UniProtKB/Swiss-Prot CatalyticActivity:
Adenosine 3,5-cyclic phosphate + H(2)O = adenosine 5-phosphate
UniProtKB/Swiss-Prot EnzymeRegulation:
Isoform 1, isoform 2, isoform 6 and isoform 7 are inhibited by rolipram and cilomilast. Isoform 1, isoform 2 and isoform 6 are inhibited by 4-[(3-butoxy-4-methoxyphenyl)-methyl]-2-imidazolidinone (Ro 20-1724), roflumilast and denbufylline.
UniProtKB/Swiss-Prot Function:
Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes.

Enzyme Numbers (IUBMB) for PDE4A Gene

Gene Ontology (GO) - Molecular Function for PDE4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004114 3,5-cyclic-nucleotide phosphodiesterase activity --
GO:0004115 3,5-cyclic-AMP phosphodiesterase activity IGI 8413254
GO:0005515 protein binding IPI 11306681
GO:0008081 phosphoric diester hydrolase activity --
GO:0030552 cAMP binding IGI 8413254
genes like me logo Genes that share ontologies with PDE4A: view
genes like me logo Genes that share phenotypes with PDE4A: view

Animal Models for PDE4A Gene

MGI Knock Outs for PDE4A:

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PDE4A

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for PDE4A Gene

Localization for PDE4A Gene

Subcellular locations from UniProtKB/Swiss-Prot for PDE4A Gene

Isoform 1: Cytoplasm, perinuclear region.
Isoform 2: Cytoplasm, perinuclear region. Cell projection, ruffle membrane.
Isoform 4: Membrane; Peripheral membrane protein. Note=Isoform 4 has propensity for association with membranes.
Isoform 6: Cytoplasm, perinuclear region.
Isoform 7: Cytoplasm. Membrane. Note=Predominantly cytoplasmic.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PDE4A Gene COMPARTMENTS Subcellular localization image for PDE4A gene
Compartment Confidence
plasma membrane 5
cytosol 4
cytoskeleton 2
endoplasmic reticulum 2
extracellular 2
mitochondrion 2
nucleus 2
lysosome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for PDE4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
GO:0005829 cytosol TAS --
GO:0016020 membrane TAS 9677330
GO:0032587 ruffle membrane IEA --
GO:0048471 perinuclear region of cytoplasm IDA 11306681
genes like me logo Genes that share ontologies with PDE4A: view

Pathways & Interactions for PDE4A Gene

genes like me logo Genes that share pathways with PDE4A: view

Pathways by source for PDE4A Gene

UniProtKB/Swiss-Prot P27815-PDE4A_HUMAN

  • Pathway: Purine metabolism; 3,5-cyclic AMP degradation; AMP from 3,5-cyclic AMP: step 1/1

Interacting Proteins for PDE4A Gene

Selected Interacting proteins: P27815-PDE4A_HUMAN for PDE4A Gene via I2D MINT

Gene Ontology (GO) - Biological Process for PDE4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006198 cAMP catabolic process IMP 17704206
GO:0007165 signal transduction IEA --
GO:0007608 sensory perception of smell IEA --
GO:0008152 metabolic process --
GO:0010738 regulation of protein kinase A signaling IEA --
genes like me logo Genes that share ontologies with PDE4A: view

No data available for SIGNOR curated interactions for PDE4A Gene

Drugs & Compounds for PDE4A Gene

(107) Drugs for PDE4A Gene - From: NovoSeek, HMDB, DrugBank, DGIdb, IUPHAR, ApexBio, and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Dipyridamole Approved Pharma Inhibition, Inhibitor, inhibitor, Target Adenosine transport inhibitor 75
Dyphylline Approved Pharma inhibitor, Target 0
Roflumilast Approved Pharma inhibitor, Target PDE-4 inhibitor 0
Ibudilast Approved, Investigational Pharma inhibitor, Target 10
Pentoxifylline Approved, Investigational Pharma antibody, Target, inhibitor 88

(59) Additional Compounds for PDE4A Gene - From: NovoSeek, HMDB, IUPHAR, and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Ro201724
Inhibition, Inhibitor
Water
  • Dihydrogen oxide
  • Steam
7732-18-5
Etazolate hydrochloride
35838-58-5
MY-5445
78351-75-4
Ro 20-1724
29925-17-5
genes like me logo Genes that share compounds with PDE4A: view

Transcripts for PDE4A Gene

Unigene Clusters for PDE4A Gene

Phosphodiesterase 4A, cAMP-specific:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PDE4A

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PDE4A Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b · 17c ^ 18a · 18b ^ 19a ·
SP1: - - - - - - - -
SP2: - - - - -
SP3: - - - - - - -
SP4: - - -
SP5: - - -
SP6: -
SP7: - - - - -
SP8: - - - - -
SP9: -
SP10: -

ExUns: 19b · 19c · 19d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for PDE4A Gene

GeneLoc Exon Structure for
PDE4A
ECgene alternative splicing isoforms for
PDE4A

Expression for PDE4A Gene

mRNA expression in normal human tissues for PDE4A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PDE4A Gene

This gene is overexpressed in Pancreatic juice (54.0) and Frontal cortex (15.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for PDE4A Gene



SOURCE GeneReport for Unigene cluster for PDE4A Gene Hs.89901

mRNA Expression by UniProt/SwissProt for PDE4A Gene

P27815-PDE4A_HUMAN
Tissue specificity: Isoform 1 is widely expressed. Isoform 2 is abundant in liver, stomach, testis, thyroid and adrenal glands. It is also found in placenta, kidney, pancreas, ovary, uterus, skin, monocytes, mast cells, macrophages, as well as in bronchial smooth muscle. Isoform 6 is expressed at high levels in the heart and small intestine. It is also found in the brain, kidney, spleen, colon, salivary gland, ovary and peripheral blood lymphocytes. Isoform 7 is expressed predominantly in skeletal muscle and brain and at lower levels in the testis. Isoform 7 is expressed in the brain. Found in specific neuronal subpopulations in cortex, spinal cord and cerebellum (at protein level).
genes like me logo Genes that share expression patterns with PDE4A: view

Protein tissue co-expression partners for PDE4A Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for PDE4A Gene

Orthologs for PDE4A Gene

This gene was present in the common ancestor of animals.

Orthologs for PDE4A Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia PDE4A 35
  • 87.05 (n)
  • 88.74 (a)
PDE4A 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pde4a 35
  • 82.05 (n)
  • 84.82 (a)
Pde4a 16
Pde4a 36
  • 85 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pde4a 35
  • 82.92 (n)
  • 85.58 (a)
cow
(Bos Taurus)
Mammalia PDE4A 36
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PDE4A 36
  • 72 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PDE4A 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PDE4A 36
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100488846 35
  • 75.72 (n)
  • 85.99 (a)
zebrafish
(Danio rerio)
Actinopterygii pde4a 35
  • 75.56 (n)
  • 82.58 (a)
pde4a 36
  • 69 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta dnc 37
  • 60 (a)
worm
(Caenorhabditis elegans)
Secernentea R153.1a 37
  • 54 (a)
Species with no ortholog for PDE4A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PDE4A Gene

ENSEMBL:
Gene Tree for PDE4A (if available)
TreeFam:
Gene Tree for PDE4A (if available)

Paralogs for PDE4A Gene

Paralogs for PDE4A Gene

(6) SIMAP similar genes for PDE4A Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with PDE4A: view

Variants for PDE4A Gene

Sequence variations from dbSNP and Humsavar for PDE4A Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs477174 -- 10,433,356(-) ATACA(A/G)TGTCC intron-variant
rs513663 -- 10,428,861(-) GCCAC(C/T)GCGCC intron-variant, upstream-variant-2KB
rs633260 -- 10,430,714(-) TTCCG(C/G)GTTCG intron-variant, upstream-variant-2KB
rs753859 -- 10,420,548(-) GTGCC(C/G)GGCGG upstream-variant-2KB, intron-variant
rs892223 -- 10,420,656(-) GGCCG(C/G)GGTAG upstream-variant-2KB, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PDE4A Gene

Variant ID Type Subtype PubMed ID
dgv3725n71 CNV Loss 21882294
nsv518008 CNV Gain 19592680
nsv911041 CNV Loss 21882294
nsv521918 CNV Gain 19592680
nsv833744 CNV Loss 17160897

Variation tolerance for PDE4A Gene

Residual Variation Intolerance Score: 10.05% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.03; 75.06% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PDE4A Gene

HapMap Linkage Disequilibrium report
PDE4A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PDE4A Gene

Disorders for PDE4A Gene

MalaCards: The human disease database

(20) MalaCards diseases for PDE4A Gene - From: DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
vasculogenic impotence
  • impotence, vasculogenic
jejunoileitis
bladder neck obstruction
  • obstruction of bladder neck
toxic myocarditis
male reproductive system disease
  • disorder of male reproductive system
- elite association
Search PDE4A in MalaCards View complete list of genes associated with diseases

Relevant External Links for PDE4A

Genetic Association Database (GAD)
PDE4A
Human Genome Epidemiology (HuGE) Navigator
PDE4A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PDE4A
genes like me logo Genes that share disorders with PDE4A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PDE4A Gene

Publications for PDE4A Gene

  1. Ibudilast inhibits cerebral aneurysms by down-regulating inflammation-related molecules in the vascular wall of rats. (PMID: 20124930) Yagi K. … Nagahiro S. (Neurosurgery 2010) 23 25 26 67
  2. Preferential inhibition of human phosphodiesterase 4 by ibudilast. (PMID: 16313925) Huang Z. … Noguchi K. (Life Sci. 2006) 23 25 26 67
  3. Inhibition of human phosphodiesterase 4A expressed in yeast cell GL62 by theophylline, rolipram, and acetamide-45. (PMID: 12421478) Wang K. … Chen J.C. (Acta Pharmacol. Sin. 2002) 23 25 26 67
  4. Caffeine and adenosine. (PMID: 20164566) Ribeiro J.A. … SebastiALo A.M. (J. Alzheimers Dis. 2010) 23 25 67
  5. Effects of piclamilast, a selective phosphodiesterase-4 inhibitor, on oxidative burst of sputum cells from mild asthmatics and stable COPD patients. (PMID: 15765929) Beeh K.M. … Buhl R. (Lung 2004) 23 25 67

Products for PDE4A Gene

Sources for PDE4A Gene

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