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Aliases & Descriptions for PDCD4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases H731 1 , 2 , 3 MGC33046 2 MGC33047 2 OTTHUMP00000020483 2
Descriptions Neoplastic transformation inhibitor protein 3 Nuclear antigen H731-like 3 Protein 197/15a 3 nuclear antigen H731 2 programmed cell death 4 2 programmed cell death 4 (neoplastic transformation inhibitor) 2
Search outside databases for aliases for PDCD4 genePrevious GC identifers: GC10P111524 GC10P111865 GC10P112762 GC10P112296
Summaries for PDCD4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PDCD4 : This gene encodes a protein localized to the nucleus in proliferating cells. Expression of thisgene is modulated by cytokines in natural killer and T cells. The gene product is thought to playa role in apoptosis but the specific role has not yet been determined. Two transcripts encodingdifferent isoforms have been identified. [provided by RefSeq] UniProtKB/Swiss-Prot: PDCD4_HUMAN, Q53EL6 Function : Tumor suppressor. Inhibits tumor promoter-induced neoplastic transformation.Down-regulates the expression of MAP4K1, thus inhibiting events important in driving invasion,namely, MAPK85 activation and consequent JUN-dependent transcription. May play a role inapoptosis. Inhibits the helicase activity of EIF4A and cap-dependent translation. Binds RNA (Bysimilarity)
Gene Wiki entry for PDCD4
Genomic Location for PDCD4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PDCD4 gene Entrez Gene cytogenetic band: 10q24 Ensembl cytogenetic band: 10q25.2 HGNC cytogenetic band: 10q24 PDCD4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P112618:
(about GC identifiers )
Start:
112,621,586 bp from pter
End:
112,649,754 bp from pter
Size:
28,169 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_030059.12 Proteins for PDCD4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PDCD4_HUMAN, Q53EL6 (See
protein sequence )Recommended Name: Programmed cell death protein 4 Size : 469 amino acids; 51721 Da
Subunit : Interacts with EIF4A1 and EIF4A2 (By similarity)
Subcellular location : Nucleus. Cytoplasm. Note=Shuttles between the nucleus and cytoplasm.Predominantly nuclear under normal growth conditions. Exported from the nucleus in the absence ofserum
Sequence caution : Sequence=AAB42218.1; Type=Erroneous gene model prediction; Sequence=AAH15036.1;Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
PDB structures from and Proteopedia : 2GGF (3D)
 2RG8 (3D)
 2ZU6 (3D)
 3EIJ (3D)
 
Secondary accessions : O15501 Q5VZS6 Q6PJI5 Q8TAR5 Q99834
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_055271.2 NP_663314.1 ENSEMBL proteins: ENSP00000280154 ENSP00000376816 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for PDCD4: Assays for PDCD4:
Protein
Domains/ Families for PDCD4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q53EL6 ProtoNet protein and cluster: Q53EL6
UniProtKB/Swiss-Prot: PDCD4_HUMAN, Q53EL6 Domain : Binds EIF4A1 via the MA3 domains (By similarity)Similarity : Belongs to the PDCD4 familySimilarity : Contains 2 MI domains
Gene Function for PDCD4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_145341 Applied Biosystems Silencer ® siRNAs for PDCD4 Sigma-Aldrich siRNA for PDCD4 Sigma-Aldrich shRNA for PDCD4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_014456                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_014456                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_014456  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_014456 UniProtKB/Swiss-Prot: PDCD4_HUMAN, Q53EL6 Function : Tumor suppressor. Inhibits tumor promoter-induced neoplastic transformation.Down-regulates the expression of MAP4K1, thus inhibiting events important in driving invasion,namely, MAPK85 activation and consequent JUN-dependent transcription. May play a role inapoptosis. Inhibits the helicase activity of EIF4A and cap-dependent translation. Binds RNA (Bysimilarity) Induction : IL2 stimulation inhibits expression, while IL12 increases expression
Genatlas biochemistry entry for PDCD4 :programmed cell death (apoptosis),inhibited by topoisomerase inhibitors (TIS)
6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Pdcd4) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for PDCD4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for PDCD4 5/19 Interacting proteins for PDCD4 (ENSP00000280154 3 Q53EL6 1 ) via UniProtKB, MINT, and/or STRING (see all 19
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for PDCD4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
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PharmGKB )
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Browse Tocris compounds for PDCD4
Transcripts for PDCD4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
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exon structure from GeneLoc ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_145341 Sigma-Aldrich siRNA for PDCD4 Sigma-Aldrich shRNA for PDCD4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_014456 NM_145341
REFSEQ mRNAs for PDCD4 gene (2 alternative transcripts): NM_014456.3 NM_145341.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_014456 NM_145341
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_014456                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_014456                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_014456  
Additional cDNA sequence: AK223623.1 AK296753.1 AK312540.1 AK315295.1 AL049932.1 BC015036.2 BC026104.2 BC031049.1 BC043171.1 BX537500.1 BX641168.1 BX647834.1 CR617800.1 U96628.1
24/33 DOTS entries (see all 33
): DT.99974205 DT.92448947 DT.100692869 DT.100719086 DT.100879329 DT.121276789 DT.100879344 DT.40268444 DT.121276767 DT.453233 DT.100030431 DT.100879336 DT.121276707 DT.217032 DT.95337944 DT.100879324 DT.95098873 DT.100648348 DT.75165023 DT.91753660 DT.95145816 DT.95337939 DT.95337952 DT.101964489
24/434 AceView cDNA sequences (see all 434
):NM_145341 BM806403 AW192359 BM802759 BM550622 BU077442 BE163926 CR617800 BG319447 N57162 AW196927 AI077964 AW373649 AW841879 AA236923 AA973698 AL708961 AI420607 AA908461 BX494220 BU621309 NM_014456 AA190211 CB216122
highest scoring ESTs for PDCD4 :AL049932 AA081192 AA081300 AA115859 AA129597 AA190222 AA190224 AA194988 AA195117 AA236767
Unigene Cluster for PDCD4: Programmed cell death 4 (neoplastic transformation inhibitor) Hs.711490 [show with all ESTs ] Unigene Representative Sequence: BX537500 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for PDCD4 (see all 16
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c · 3d ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b · 11c ^ 12a · 12b · 12c · 12d ^ SP1 :                 -   -                 -   -   -               SP2 :                                   -   -   -             -   SP3 :                 -   -       -   -         -   -   -               SP4 :                 -   -   -       -   -       -   -   -               SP5 :                 -   -   -               -   -   -              
ExUns: 13a · 13b ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17a · 17b · 17c ^ 18 SP1 :   -       -       -         SP2 : -   -   -     -       -         SP3 :                       SP4 :                       SP5 :                      
About this scheme ECgene alternative splicing isoforms for PDCD4 2 Ensembl transcripts including schematic representations : ENST00000280154
ENST00000393104
Expression for PDCD4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PDCD4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PDCD4 1 / 2 / 3
10 probe-sets matching PDCD4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.711490 Expression variation in blood from EXPOLDB for PDCD4
UniProtKB/Swiss-Prot: PDCD4_HUMAN, Q53EL6 Tissue specificity : Up-regulated in proliferative cells. Highly expressed in epithelial cells ofthe mammary gland
Orthologs for PDCD4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
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Gene Trees according to Ensembl )
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Orthologs for PDCD4 gene from 5/16 species (see all 16
)
About this table Species with no ortholog for PDCD4 ENSEMBL Gene Tree for PDCD4 Paralogs for PDCD4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for PDCD4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PDCD4 (up to first 250kb)
Disorders & Mutations for PDCD4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 608610 UniProtKB/Swiss-Prot: PDCD4_HUMAN, Q53EL6
Loss of expression correlated with tumor progression of lung and colon carcinoma
5 Novoseek disease relationships for PDCD4 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
neoplastic transformation
72.88
4
10570194 (2), 16449643 (1), 17828298 (1)
colon carcinoma
45.48
4
16449643 (2), 17828298 (1)
colorectal cancer
36.59
8
17849461 (3), 17968323 (1)
tumors
32.90
47
17849461 (5), 17955371 (4), 18296647 (3), 17828298 (3) (see all 16 )
cancer
15.39
11
14985450 (3), 18296647 (2), 14630388 (1), 18427550 (1) (see all 5 )
About this table
Medical News for PDCD4 (Possibly Related Articles in
Doctor's Guide )
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Publications for PDCD4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/56 PubMed articles for PDCD4 gene (see all 56
): Differential transcriptional regulation of CD161 and a novel gene, 197/15a, by IL-2, IL-15, and IL-12 in NK and T cells. (PubMed id 9759869) 2, 3, 4 Azzoni L....Perussia B. (1998) Tumorigenesis suppressor Pdcd4 down-regulates mitogen-activated protein kinase kinase kinase kinase 1 expression to suppress colon carcinoma cell invasion. (PubMed id 16449643) 1, 3, 4 Yang H.-S.... Colburn N.H. (2006) Novel human PDCD4 (H731) gene expressed in proliferative cells is expressed in the small duct epithelial cells of the breast as revealed by an anti-H731 antibody. (PubMed id 10632927) 1, 3, 4 Yoshinaga H.... Masaki Z. (1999) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243) 3, 4 Beausoleil S.A.... Gygi S.P. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054) 3, 4 Deloukas P.... Rogers J. (2004) Loss of PDCD4 expression in human lung cancer correlates with tumour progression and prognosis. (PubMed id 12898601) 3, 4 Chen Y.... Petersen I. (2003) Loss of programmed cell death 4 expression marks adenoma-carcinoma transition, correlates inversely with phosphorylated protein kinase B, and is an independent prognostic factor in resected colorectal cancer. (PubMed id 17849461) 1, 3 Mudduluru G....Allgayer H. (2007)
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Genome Databases showing PDCD4
(According to
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euGenes ,
Ensembl ,
miRBase ,
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and/or
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Other Databases showing PDCD4
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Specialized Databases showing PDCD4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Licensable Technologies for PDCD4 gene: Services for PDCD4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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