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Aliases for PCTP Gene

Aliases for PCTP Gene

  • Phosphatidylcholine Transfer Protein 2 3
  • StAR-Related Lipid Transfer (START) Domain Containing 2 2 3
  • StAR-Related Lipid Transfer Protein 2 3 4
  • START Domain-Containing Protein 2 3 4
  • STARD2 3 4
  • PC-TP 3 4

External Ids for PCTP Gene

Previous GeneCards Identifiers for PCTP Gene

  • GC17P053563
  • GC17P056309
  • GC17P054170
  • GC17P054303
  • GC17P054302
  • GC17P051183
  • GC17P053828
  • GC17P049187

Summaries for PCTP Gene

GeneCards Summary for PCTP Gene

PCTP (Phosphatidylcholine Transfer Protein) is a Protein Coding gene. Diseases associated with PCTP include cannabis dependence. GO annotations related to this gene include phosphatidylcholine binding and phosphatidylcholine transporter activity. An important paralog of this gene is STARD7.

UniProtKB/Swiss-Prot for PCTP Gene

  • Catalyzes the transfer of phosphatidylcholine between membranes. Binds a single lipid molecule.

Gene Wiki entry for PCTP Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCTP Gene

Genomics for PCTP Gene

Regulatory Elements for PCTP Gene

Genomic Location for PCTP Gene

Start:
55,750,979 bp from pter
End:
55,843,156 bp from pter
Size:
92,178 bases
Orientation:
Plus strand

Genomic View for PCTP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PCTP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCTP Gene

Proteins for PCTP Gene

  • Protein details for PCTP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UKL6-PPCT_HUMAN
    Recommended name:
    Phosphatidylcholine transfer protein
    Protein Accession:
    Q9UKL6
    Secondary Accessions:
    • Q9BSC9
    • Q9UIT3
    • Q9UKW7

    Protein attributes for PCTP Gene

    Size:
    214 amino acids
    Molecular mass:
    24843 Da
    Quaternary structure:
    • Interacts with ACOT13/THEM2.
    SequenceCaution:
    • Sequence=AAH05112.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for PCTP Gene

    Alternative splice isoforms for PCTP Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PCTP Gene

Proteomics data for PCTP Gene at MOPED

Post-translational modifications for PCTP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PCTP Gene

Antibody Products

No data available for DME Specific Peptides for PCTP Gene

Domains for PCTP Gene

Gene Families for PCTP Gene

HGNC:
  • StARD :StAR-related lipid transfer (START) domain containing

Protein Domains for PCTP Gene

Graphical View of Domain Structure for InterPro Entry

Q9UKL6

UniProtKB/Swiss-Prot:

PPCT_HUMAN :
  • Q9UKL6
Domain:
  • Contains 1 START domain.
genes like me logo Genes that share domains with PCTP: view

Function for PCTP Gene

Molecular function for PCTP Gene

GENATLAS Biochemistry:
phosphatidylcholine transfer protein,cytosolic protein catalyzing intermembrane transfer of phosphatidylcholines in vitro
UniProtKB/Swiss-Prot Function:
Catalyzes the transfer of phosphatidylcholine between membranes. Binds a single lipid molecule.

Gene Ontology (GO) - Molecular Function for PCTP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008289 lipid binding --
GO:0008525 phosphatidylcholine transporter activity TAS 10500206
GO:0031210 phosphatidylcholine binding IDA 12055623
genes like me logo Genes that share ontologies with PCTP: view
genes like me logo Genes that share phenotypes with PCTP: view

Animal Models for PCTP Gene

MGI Knock Outs for PCTP:

Animal Model Products

miRNA for PCTP Gene

miRTarBase miRNAs that target PCTP

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for PCTP Gene

Localization for PCTP Gene

Subcellular locations from UniProtKB/Swiss-Prot for PCTP Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PCTP Gene COMPARTMENTS Subcellular localization image for PCTP gene
Compartment Confidence
cytosol 5
mitochondrion 2
nucleus 2
extracellular 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for PCTP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS 12055623
genes like me logo Genes that share ontologies with PCTP: view

Pathways for PCTP Gene

SuperPathways for PCTP Gene

No Data Available

Interacting Proteins for PCTP Gene

Gene Ontology (GO) - Biological Process for PCTP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006869 lipid transport NAS 10542325
GO:0008203 cholesterol metabolic process IEA --
GO:0015914 phospholipid transport IDA 12055623
genes like me logo Genes that share ontologies with PCTP: view

No data available for Pathways by source for PCTP Gene

Compounds for PCTP Gene

(1135) HMDB Compounds for PCTP Gene

Compound Synonyms Cas Number PubMed IDs
PC(14:0/14:0)
  • Phosphatidylcholine(14:0/14:0)
Not Available
PC(14:0/14:1(9Z))
  • Phosphatidylcholine(14:0/14:1)
Not Available
PC(14:0/15:0)
  • GPCho(14:0/15:0)
Not Available
PC(14:0/16:0)
  • GPCho(30:0)
Not Available
PC(14:0/16:1(9Z))
  • 1-myristoyl-2-palmitoleoyl-sn-glycero-3-phosphocholine
Not Available

(2) Drugbank Compounds for PCTP Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Di-Linoleoyl-3-Sn-Phosphatidylcholine
target
Palmitoyl-Linoleoyl Phosphatidylcholine
target

(6) Novoseek inferred chemical compound relationships for PCTP Gene

Compound -log(P) Hits PubMed IDs
pctp 97 10
phosphatidylcholine 81.6 30
phospholipid 50.8 3
phosphatidylinositol 45.6 4
sterol 39.2 1
genes like me logo Genes that share compounds with PCTP: view

Transcripts for PCTP Gene

Unigene Clusters for PCTP Gene

Phosphatidylcholine transfer protein:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PCTP

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCTP Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d
SP1: - - - - - -
SP2: - - - - -
SP3: - -
SP4: - - - -
SP5: - - -

Relevant External Links for PCTP Gene

GeneLoc Exon Structure for
PCTP
ECgene alternative splicing isoforms for
PCTP

Expression for PCTP Gene

mRNA expression in normal human tissues for PCTP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PCTP Gene

This gene is overexpressed in Liver (6.0).

Protein differential expression in normal tissues for PCTP Gene

This gene is overexpressed in Gallbladder (13.3) and Liver (7.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PCTP Gene

SOURCE GeneReport for Unigene cluster for PCTP Gene Hs.285218

mRNA Expression by UniProt/SwissProt for PCTP Gene

Q9UKL6-PPCT_HUMAN
Tissue specificity: Highest expression in liver, placenta, testis, kidney and heart. Low levels in brain and lung. No expression detected in thymus.
genes like me logo Genes that share expressions with PCTP: view

Expression partners for PCTP Gene

In Situ Assay Products

Orthologs for PCTP Gene

This gene was present in the common ancestor of animals.

Orthologs for PCTP Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PCTP 35
  • 85.53 (n)
  • 80.66 (a)
-- 36
  • 58 (a)
OneToMany
-- 36
  • 53 (a)
OneToMany
-- 36
  • 59 (a)
OneToMany
PCTP 36
  • 80 (a)
OneToMany
dog
(Canis familiaris)
Mammalia PCTP 35
  • 86.6 (n)
  • 81.78 (a)
PCTP 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pctp 35
  • 83.33 (n)
  • 81.31 (a)
Pctp 16
Pctp 36
  • 81 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PCTP 35
  • 99.07 (n)
  • 99.07 (a)
PCTP 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pctp 35
  • 82.87 (n)
  • 79.44 (a)
oppossum
(Monodelphis domestica)
Mammalia PCTP 36
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PCTP 36
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves PCTP 35
  • 70.87 (n)
  • 69.9 (a)
PCTP 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PCTP 36
  • 48 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii pctp 35
  • 65.37 (n)
  • 63.9 (a)
pctp 36
  • 61 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10579 35
fruit fly
(Drosophila melanogaster)
Insecta CG6565 36
  • 14 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 33 (a)
OneToOne
Species with no ortholog for PCTP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PCTP Gene

ENSEMBL:
Gene Tree for PCTP (if available)
TreeFam:
Gene Tree for PCTP (if available)

Paralogs for PCTP Gene

Paralogs for PCTP Gene

genes like me logo Genes that share paralogs with PCTP: view

Variants for PCTP Gene

Sequence variations from dbSNP and Humsavar for PCTP Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs13477 -- 55,777,070(-) AAAAG(A/G)TGCAG utr-variant-3-prime, intron-variant
rs467984 -- 55,804,058(-) gtctg(C/T)tcatg intron-variant
rs882090 -- 55,770,122(+) AGAGG(A/G)TGTGC intron-variant
rs882091 -- 55,769,885(+) GGGGC(G/T)ATCAA intron-variant
rs890487 -- 55,750,202(+) TCCAG(A/C)GTTTA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PCTP Gene

Variant ID Type Subtype PubMed ID
nsv908620 CNV Loss 21882294
nsv2100 CNV Loss 18451855

Relevant External Links for PCTP Gene

HapMap Linkage Disequilibrium report
PCTP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PCTP Gene

Disorders for PCTP Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for PCTP Gene in MalaCards »

(1) Diseases for PCTP Gene including...

Relevant External Links for PCTP

Genetic Association Database (GAD)
PCTP
Human Genome Epidemiology (HuGE) Navigator
PCTP
genes like me logo Genes that share disorders with PCTP: view

No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for PCTP Gene

Publications for PCTP Gene

  1. Cloning, tissue-specific expression, gene structure and chromosomal localization of human phosphatidylcholine transfer protein. (PMID: 10542325) Cohen D.E. … Beier D.R. (Biochim. Biophys. Acta 1999) 3 4 23
  2. Human phosphatidylcholine transfer protein: purification, crystallization and preliminary X-ray diffraction data. (PMID: 11983415) Chan W.W. … Cohen D.E. (Biochim. Biophys. Acta 2002) 3 4 23
  3. Influences of the phosphatidylcholine transfer protein gene variants on the LDL peak particle size. (PMID: 17266964) Dolley G. … Vohl M.C. (Atherosclerosis 2007) 3 23
  4. Mice without phosphatidylcholine transfer protein have no defects in the secretion of PC into bile or into the lung airspaces. (PMID: 10500206) van Helvoort A. … Borst P. (Proc. Natl. Acad. Sci. U.S.A. 1999) 3 4
  5. Structure of human phosphatidylcholine transfer protein in complex with its ligand. (PMID: 12055623) Roderick S.L. … Cohen D.E. (Nat. Struct. Biol. 2002) 3 4

Products for PCTP Gene

Sources for PCTP Gene

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