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PCSK5 Gene

protein-coding   GIFtS: 56

GC09P077695
proprotein convertase subtilisin/kexin type 5
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 3.4.21.- 3
OTTHUMP00000021497 2
OTTHUMP00000063532 2
PC5 1, 2, 3
PC6 1, 2, 3
PC6A 2
SPC6 1, 2
hPC6 3
Descriptions
Proprotein convertase PC5 2, 3
Subtilisin/kexin-like protease PC5 2, 3
prohormone convertase 5 2
proprotein convertase subtilisin/kexin type 5 2
protease PC6 2
External Ids
HGNC: 87471
Entrez Gene: 51252
UniProtKB: Q928243
Ensembl: ENSG000000991397
Search outside databases for aliases for PCSK5 gene

Previous GC identifers: GC09P069549 GC09P070362 GC09P072075 GC09P073962 GC09P075735

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for PCSK5:
The protein encoded by this gene belongs to the subtilisin-like proprotein convertase family. The
members of this family are proprotein convertases that process latent precursor proteins into
their biologically active products. This encoded protein mediates posttranslational
endoproteolytic processing for several integrin alpha subunits. It is thought to process prorenin,
pro-membrane type-1 matrix metalloproteinase and HIV-1 glycoprotein gp160. Two alternatively
spliced transcripts are described for this gene but only one has its full length nature known.
[provided by RefSeq]

UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824
Function: Likely to represent a widespread endoprotease activity within the constitutive and
regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motif

Gene Wiki entry for PCSK5

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the PCSK5 gene  

Entrez Gene cytogenetic band: 9q21.3   Ensembl cytogenetic band:  9q21.13   HGNC chromosome: 9

PCSK5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P077695:     (about GC identifiers)

Start:
77,695,406 bp from pter
End:
78,163,658 bp from pter
Size:
468,253 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000009.10  NT_023935.17  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824 (See protein sequence)
Recommended Name: Proprotein convertase subtilisin/kexin type 5 precursor  
Size: 913 amino acids; 101649 Da
Subcellular location: Secreted (By similarity)
Secondary accessions: Q13527 Q96EP4
Alternative splicing: 1 isoform:  Q92824-1   (2 isoforms may be produced)

REFSEQ proteins: NP_006191.2  

ENSEMBL proteins: 
ENSP00000379415 ENSP00000365945 ENSP00000365958 ENSP00000365943 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (PC6)
Human Recombinant Proteins from Abnova (PCSK5)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

5 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region IEA--
GO:0005615 extracellular space IEA--
GO:0005794 Golgi apparatus IEA--
GO:0005796 Golgi lumen EXP8615794
GO:0030141 secretory granule IEA--
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Antibodies for PCSK5: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Browse Antibodies at Sigma-Aldrich
Browse R&D Systems for Antibodies
Antibodies from Abcam (PC6), each with their AbpromiseSM
Browse Abnova for Monoclonal and Polyclonal Antibodies
Search Novus for antibodies for PCSK5

Assays for PCSK5: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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5 InterPro domains/families:
 IPR002884 PrprotnconvertsP
 IPR006212 Furin_repeat
 IPR000209 Pept_S8_S53
 IPR010909 PLAC
 IPR015500 Peptidase_S8_subtilisin-rel


   GeneDecks  PCSK5 for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry Q92824

ProtoNet protein and cluster: Q92824

3 Blocks protein families:
IPB000209 Subtilisin serine protease family (S8) signature
IPB002884 Proprotein convertase
IPB006212 Furin-like repeat


UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824
Domain: The propeptide domain acts as an intramolecular chaperone assisting the folding of the
zymogen within the endoplasmic reticulum
Similarity: Belongs to the peptidase S8 family
Similarity: Contains 1 homo B/P domain
Similarity: Contains 1 PLAC domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (PCSK5)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006200

              Applied Biosystems Silencer® siRNAs for PCSK5

              Sigma-Aldrich siRNA and siRNA Panels for PCSK5  
                     Sigma-Aldrich shRNA for PCSK5  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for PCSK5
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006200
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006200
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_006200 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_006200

UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824
Function: Likely to represent a widespread endoprotease activity within the constitutive and
regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motif
Catalytic activity: Release of mature proteins from their proproteins by cleavage of
Arg-Xaa-Yaa-Arg- -Zaa bonds, where Xaa can be any amino acid and Yaa is Arg or Lys
Enzyme Number (IUBMB): EC 3.4.21.- 

Genatlas biochemistry entry for PCSK5:
proprotein convertase subtilisin,kexin-like 5,exhibiting the presence of multiple alternative
forms,expressed in regulated and constitutively secreting cells

14 MGI mutant phenotypes (inferred from 5 alleles(MGI details for Pcsk5):

craniofacialdigestive/alimentaryembryogenesisgrowth/size
hematopoietic systemimmune systemlethality-prenatal/perinatallimbs/digits/tailnervous system
no phenotypic analysisrenal/urinary systemrespiratory systemskeleton

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004252 serine-type endopeptidase activity IEA--
GO:0008233 peptidase activity IEA--
GO:0042277 peptide binding IEA--
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(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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 Gene Network CentralTM Interacting Genes and Proteins Network for  PCSK5 


5/8 Interacting proteins for PCSK5 (ENSP000003659453 Q928242) via UniProtKB, MINT, and/or STRING (see all 8 )
InteractantInteraction Details
GeneCardExternal ID(s)
ATN1P542592MINT-2861631
NGFENSP000003585253STRING (score=.972)
FURINENSP000002681713STRING (score=.916)
PCSK6ENSP000003050563STRING (score=.911)
ANXA1ENSP000003661093STRING (score=.77)
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5/15 Gene Ontology (GO) biological process terms (links to tree view) (see all 15 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001822 kidney development IEA--
GO:0002001 renin secretion into blood stream IEP8901832
GO:0006465 signal peptide processing IDA16912035
GO:0007267 cell-cell signaling TAS8901832
GO:0007507 heart development IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for PCSK5

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (PCSK5)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006200

              Sigma-Aldrich siRNA and siRNA Panels for PCSK5  
                     Sigma-Aldrich shRNA for PCSK5  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_006200  

REFSEQ mRNAs for PCSK5 gene: 

NM_006200.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_006200  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006200
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006200
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_006200 

Additional cDNA sequence: 

AK023096.1 AK056202.1 AK225773.1 AK310862.1 AL834522.1 BC012064.1 U49114.1 U56387.2 

9 DOTS entries:

DT.312399  DT.311845  DT.121188067  DT.100644172  DT.91743071  DT.86846908  DT.100775705  DT.102826294 
DT.121188127 

24/130 AceView cDNA sequences (see all 130 ):

CD559043 AA399377 AI379031 AI146827 AI167576 AL138208 CD519399 AL138118 
BC012064 CD622139 U49114 CD622141 AL834522 BM828796 AK056202 AX805784 
AA401788 CF551985 AA317669 BU622566 AI435197 AW261870 BP346136 AW960690 

highest scoring ESTs for PCSK5:

U56387 AA256399 AA256502 AA716104 AA779339 AI079572 AI093799 AI400544 AI567695 AI572500 

Unigene Cluster for PCSK5:

Proprotein convertase subtilisin/kexin type 5
Hs.368542  [show with all ESTs]
Unigene Representative Sequence: NM_006200


GeneLoc Exon Structure

4 Ensembl transcripts including schematic representations:
ENST00000396108  ENST00000376754  ENST00000376767  ENST00000376752  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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PCSK5 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for PCSK5

1 / 2 / 3

8 probe-sets matching PCSK5 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

41032_at2, 3 U95-A 1 0.31 1.00 0.97 0.66 U56387 1.00 1.00 1.00 1
60802_at*2, 3 U95-C 1 1.00 1.00 0.95 1.37 AA778399 0.60 1.00 0.82 1

205559_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_006200 0.60 1.00 0.82 1

205560_at2, 3 U133-A 1 1.00 1.00 -- -- NM_006200 0.60 1.00 0.82 1

213652_at*2, 3 U133-A 1 1.00 1.00 -- -- AU152579 0.40 1.00 0.76 1

205559_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

205560_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

213652_at*2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  PCSK5 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: TACATTTCAA

SOURCE GeneReport for Unigene cluster: Hs.368542

Expression variation in blood from EXPOLDB for PCSK5

UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824
Tissue specificity: Expressed in T-lymphocytes

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for PCSK5 gene from 5/11 species (see all 11 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
PCSK51   -- proprotein convertase subtilisin/kexin type 5 91.14(n)
96(a)
484160  XM_541276.2  XP_541276.2 
chimpanzee
(Pan troglodytes)
PCSK51   -- proprotein convertase subtilisin/kexin type 5 97.53(n)
97.46(a)
464533  XM_520079.2  XP_520079.2 
cow
(Bos taurus)
PCSK51   -- proprotein convertase subtilisin/kexin type 5 89.92(n)
95.24(a)
528098  XM_606509.3  XP_606509.3 
rat
(Rattus norvegicus)
Pcsk51   -- proprotein convertase subtilisin/kexin type 5 87.7(n)
94.36(a)
116548  XM_342032.3  XP_342033.3 
mouse
(Mus musculus)
Pcsk51, 5 19 (18.00 cM)5
proprotein convertase subtilisin/kexin type 51, 5 88.43(n)1
94.96(a)1
185521  XM_129214.61  XP_129214.51 
 AK0327365  AK1439985  (see all 12)
About this table        Species with no ortholog for PCSK5

ENSEMBL Gene Tree for PCSK5
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for PCSK5 gene
PCSK42  PCSK62  FURIN2  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/1983 NCBI SNPs in PCSK5 are shown (see all 1983 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 721)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 9 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs108697291,2
A,C,F,H77998313(+) TTTTAT/CAACTG 1 -- ng31 ese310Minor allele frequency- C:0.07EU EA WA NA 1020
--
rs65604741,2
A,C,F,H77693927(+) CTCTAC/GAGTAT 1 -- ng514Minor allele frequency- G:0.47EU EA WA 418
rs38141151,2
A,C,F,H77694549(+) GTGCAT/CGATAG 1 -- ng5112Minor allele frequency- C:0.43EU EA WA 1254
rs120050731,2
C,F77695709(+) GTCCCG/TGCAGC 1 -- ut51 ese32Minor allele frequency- T:0.19NA 182
rs78536081,2
A,C77695286(+) TCGTCA/GGCGCC 1 -- ng510--------
rs38141171,2
C77695423(+) AATCCC/TCGCGC 1 -- ut51 ese30--------
--
rs125510541,2
C77693635(+) tgcgaC/Ggccaa 1 -- ng510--------
--
rs70280151,2
A77694531(+) CTGCCC/TGCTGC 1 -- ng510--------
--
rs111446671,2
A77693535(+) agcgaC/Gactcc 1 -- ng510--------
rs70407691,2
A,C,F77696007(+) GTGTGT/CCGGAC 1 C/C syn1 ese31Minor allele frequency- C:0.31NA 72
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HapMap Linkage Disequilibrium images for PCSK5 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 600488

6 Novoseek disease relationships for PCSK5 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
atherosclerosis 22.44 4 16244876 (2), 15911696 (1), 15756593 (1)
atherosclerotic plaque 19.63 1 15911696 (1)
restenosis 14.00 2 16244876 (2)
tumors 1.43 1 11457520 (1)
influenza 1.06 2 10074171 (1), 8057485 (1)
cancer 0.00 1 18664504 (1)
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(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/83 PubMed articles for PCSK5 gene (see all 83 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 5125 HGNC: 8747 AceView: PCSK5 Ensembl:ENSG00000099139 euGenes: HUgn5125
ECgene: PCSK5 H-InvDB: PCSK5
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for PCSK5:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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