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Aliases & Descriptions for PCSK5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.4.21.- 3 | | OTTHUMP00000021497 2 | | OTTHUMP00000063532 2 | | PC5 1, 2, 3 | | PC6 1, 2, 3 | | PC6A 2 | | SPC6 1, 2 | | hPC6 3 |
| | | Descriptions |
|---|
| Proprotein convertase PC5 2, 3 | | Subtilisin/kexin-like protease PC5 2, 3 | | prohormone convertase 5 2 | | proprotein convertase subtilisin/kexin type 5 2 | | protease PC6 2 |
|
| | Search outside databases for aliases for PCSK5 genePrevious GC identifers: GC09P069549 GC09P070362 GC09P072075 GC09P073962 GC09P075735 |
Summaries for PCSK5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for PCSK5: The protein encoded by this gene belongs to the subtilisin-like proprotein convertase family. The members of this family are proprotein convertases that process latent precursor proteins into their biologically active products. This encoded protein mediates posttranslational endoproteolytic processing for several integrin alpha subunits. It is thought to process prorenin, pro-membrane type-1 matrix metalloproteinase and HIV-1 glycoprotein gp160. Two alternatively spliced transcripts are described for this gene but only one has its full length nature known. [provided by RefSeq] UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824Function: Likely to represent a widespread endoprotease activity within the constitutive and regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motifGene Wiki entry for PCSK5 |
Genomic Location for PCSK5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PCSK5 gene 
Entrez Gene cytogenetic band: 9q21.3 Ensembl cytogenetic band: 9q21.13 HGNC chromosome: 9PCSK5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P077695:
(about GC identifiers)
Start:
|
77,695,406 bp from pter |
End:
|
78,163,658 bp from pter |
Size:
|
468,253 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000009.10 NT_023935.17
| Proteins for PCSK5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824 (See
protein sequence)Recommended Name: Proprotein convertase subtilisin/kexin type 5 precursor Size: 913 amino acids; 101649 Da
Subcellular location: Secreted (By similarity)
Secondary accessions: Q13527 Q96EP4Alternative splicing: 1 isoform: Q92824-1 (2 isoforms may be produced)REFSEQ proteins: NP_006191.2
ENSEMBL proteins: ENSP00000379415 ENSP00000365945 ENSP00000365958 ENSP00000365943
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for PCSK5: Assays for PCSK5: | Protein
Domains/ Families for PCSK5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q92824
ProtoNet protein and cluster: Q92824 3 Blocks protein families: IPB000209 Subtilisin serine protease family (S8) signature IPB002884 Proprotein convertase IPB006212 Furin-like repeat
UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824Domain: The propeptide domain acts as an intramolecular chaperone assisting the folding of the zymogen within the endoplasmic reticulumSimilarity: Belongs to the peptidase S8 familySimilarity: Contains 1 homo B/P domainSimilarity: Contains 1 PLAC domain | Gene Function for PCSK5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006200
Applied Biosystems Silencer® siRNAs for PCSK5
Sigma-Aldrich siRNA and siRNA Panels for PCSK5  Sigma-Aldrich shRNA for PCSK5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006200                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006200                                  untagged cDNA clones in CMV expression vector (see all 2): NM_006200 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006200
UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824Function: Likely to represent a widespread endoprotease activity within the constitutive and regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motifCatalytic activity: Release of mature proteins from their proproteins by cleavage of Arg-Xaa-Yaa-Arg- -Zaa bonds, where Xaa can be any amino acid and Yaa is Arg or LysEnzyme Number (IUBMB): EC 3.4.21.- Genatlas biochemistry entry for PCSK5:proprotein convertase subtilisin,kexin-like 5,exhibiting the presence of multiple alternative forms,expressed in regulated and constitutively secreting cells14 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Pcsk5):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004252 | serine-type endopeptidase activity |
IEA | -- | | GO:0008233 | peptidase activity |
IEA | -- | | GO:0042277 | peptide binding |
IEA | -- | About this table | Pathways & Interactions for PCSK5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for PCSK5 
5/8 Interacting proteins for PCSK5 (ENSP000003659453 Q928242) via UniProtKB, MINT, and/or STRING (see all 8
)About this table
5/15 Gene Ontology (GO) biological process terms (links to tree view) (see all 15
): About this table
|
Drugs & Compounds for PCSK5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for PCSK5
|
Transcripts for PCSK5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006200
Sigma-Aldrich siRNA and siRNA Panels for PCSK5  Sigma-Aldrich shRNA for PCSK5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_006200 REFSEQ mRNAs for PCSK5 gene: NM_006200.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006200               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006200                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006200                                  untagged cDNA clones in CMV expression vector (see all 2): NM_006200  Additional cDNA sequence: AK023096.1 AK056202.1 AK225773.1 AK310862.1 AL834522.1 BC012064.1 U49114.1 U56387.2 9 DOTS entries: DT.312399 DT.311845 DT.121188067 DT.100644172 DT.91743071 DT.86846908 DT.100775705 DT.102826294 DT.121188127 24/130 AceView cDNA sequences (see all 130
):CD559043 AA399377 AI379031 AI146827 AI167576 AL138208 CD519399 AL138118 BC012064 CD622139 U49114 CD622141 AL834522 BM828796 AK056202 AX805784 AA401788 CF551985 AA317669 BU622566 AI435197 AW261870 BP346136 AW960690
highest scoring ESTs for PCSK5:U56387 AA256399 AA256502 AA716104 AA779339 AI079572 AI093799 AI400544 AI567695 AI572500 Unigene Cluster for PCSK5: Proprotein convertase subtilisin/kexin type 5 Hs.368542 [show with all ESTs]Unigene Representative Sequence: NM_006200
GeneLoc Exon Structure
4 Ensembl transcripts including schematic representations: ENST00000396108
ENST00000376754
ENST00000376767
ENST00000376752
|
Expression for PCSK5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PCSK5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PCSK5
1 / 2 / 3 8 probe-sets matching PCSK5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TACATTTCAA
SOURCE GeneReport for Unigene cluster: Hs.368542
Expression variation in blood from EXPOLDB for PCSK5 UniProtKB/Swiss-Prot: PCSK5_HUMAN, Q92824Tissue specificity: Expressed in T-lymphocytes |
Orthologs for PCSK5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for PCSK5 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for PCSK5
ENSEMBL Gene Tree for PCSK5 | Paralogs for PCSK5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for PCSK5 gene
- PCSK42 PCSK62 FURIN2
|
SNPs/Variants for PCSK5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for PCSK5 (up to first 250kb)
|
Disorders & Mutations for PCSK5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600488
6 Novoseek disease relationships for PCSK5 gene
About this table
|
Medical News for PCSK5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for PCSK5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/83 PubMed articles for PCSK5 gene (see all 83
):- Chromosomal assignment of the genes for proprotein convertases PC4, PC5, and PACE 4 in mouse and human. (PubMed id 7782070)1, 2, 3 Mbikay M....Simpson E.M. (1995)
- Isolation of the human PC6 gene encoding the putative host protease for HIV-1 gp160 processing in CD4+ T lymphocytes. (PubMed id 8755538)1, 3, 4 Miranda L.... Franzusoff A. (1996)
- Inhibiting uterine PC6 blocks embryo implantation: an obligatory role for a proprotein convertase in fertility. (PubMed id 15601911)1, 3 Nie G....Salamonsen L.A. (2005)
- Increased proteolytic processing of protein tyrosine phosphatase mu in confluent vascular endothelial cells: the role of PC5, a member of the subtilisin family. (PubMed id 8620001)1, 3 Campan M....Haber E. (1996)
- Furin-like proprotein convertases are central regulators of the membrane type matrix metalloproteinase-pro-matrix metalloproteinase-2 proteolytic cascade in atherosclerosis. (PubMed id 15911696)1, 3 Stawowy P....Graf K. (2005)
- Single-nucleotide polymorphisms of the proprotein convertase subtilisin/ kexin type 5 (PCSK5) gene. (PubMed id 11776387)1, 3 Cao H....Hegele R.A. (2001)
- Prohormone convertase PC5 is a candidate processing enzyme for prorenin in the human adrenal cortex. (PubMed id 8901832)1, 3 Mercure C....Reudelhuber T.L. (1996)
- The isoforms of proprotein convertase PC5 are sorted to different subcellular compartments. (PubMed id 8947550)1, 3 De Bie I....Seidah N.G. (1996)
- Proprotein convertases promote processing of VEGF-D, a critical step for binding the angiogenic receptor VEGFR-2. (PubMed id 17242158)1, 3 McColl B.K....Achen M.G. (2007)
- Inhibitory potency and specificity of subtilase-like pro-protein convertase (SPC) prodomains. (PubMed id 11723118)1, 3 Fugere M....Day R. (2002)
|
Search for PCSK5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing PCSK5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing PCSK5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PCSK5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for PCSK5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for PCSK5:

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