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Aliases for PCSK1 Gene

Aliases for PCSK1 Gene

  • Proprotein Convertase Subtilisin/Kexin Type 1 2 3
  • Prohormone Convertase 1 2 3 4
  • Prohormone Convertase 3 2 3
  • Proprotein Convertase 1 2 4
  • EC 3.4.21.93 4 63
  • NEC1 3 4
  • PC1 3 4
  • Neuroendocrine Convertase 1 2
  • EC 3.4.21 63
  • BMIQ12 3
  • NEC 1 4
  • SPC3 3
  • PC3 3

External Ids for PCSK1 Gene

Previous HGNC Symbols for PCSK1 Gene

  • NEC1

Previous GeneCards Identifiers for PCSK1 Gene

  • GC05M094956
  • GC05M096190
  • GC05M095754
  • GC05M095800
  • GC05M095751
  • GC05M090916

Summaries for PCSK1 Gene

Entrez Gene Summary for PCSK1 Gene

  • This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. The encoded protein undergoes an initial autocatalytic processing event in the ER to generate a heterodimer which exits the ER and sorts to subcellular compartments where a second autocatalytic even takes place and the catalytic activity is acquired. The protease is packaged into and activated in dense core secretory granules and expressed in the neuroendocrine system and brain. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. It functions in the proteolytic activation of polypeptide hormones and neuropeptides precursors. Mutations in this gene have been associated with susceptibility to obesity and proprotein convertase 1/3 deficiency. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene [provided by RefSeq, Jan 2014]

GeneCards Summary for PCSK1 Gene

PCSK1 (Proprotein Convertase Subtilisin/Kexin Type 1) is a Protein Coding gene. Diseases associated with PCSK1 include proprotein convertase-1 deficiency and obesity due to prohormone convertase i deficiency. Among its related pathways are Transport to the Golgi and subsequent modification and Neuroscience. GO annotations related to this gene include serine-type endopeptidase activity and endopeptidase activity. An important paralog of this gene is FURIN.

UniProtKB/Swiss-Prot for PCSK1 Gene

  • Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues. Substrates include POMC, renin, enkephalin, dynorphin, somatostatin, insulin and AGRP.

Gene Wiki entry for PCSK1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCSK1 Gene

Genomics for PCSK1 Gene

Regulatory Elements for PCSK1 Gene

Genomic Location for PCSK1 Gene

Chromosome:
5
Start:
96,390,336 bp from pter
End:
96,434,143 bp from pter
Size:
43,808 bases
Orientation:
Minus strand

Genomic View for PCSK1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PCSK1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCSK1 Gene

Proteins for PCSK1 Gene

  • Protein details for PCSK1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P29120-NEC1_HUMAN
    Recommended name:
    Neuroendocrine convertase 1
    Protein Accession:
    P29120
    Secondary Accessions:
    • B7Z8T7
    • E9PHA1
    • P78478
    • Q92532

    Protein attributes for PCSK1 Gene

    Size:
    753 amino acids
    Molecular mass:
    84152 Da
    Cofactor:
    Name=Ca(2+); Xref=ChEBI:CHEBI:29108;
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for PCSK1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PCSK1 Gene

Proteomics data for PCSK1 Gene at MOPED

Post-translational modifications for PCSK1 Gene

Other Protein References for PCSK1 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for PCSK1 (PCSK1)

Domains & Families for PCSK1 Gene

Gene Families for PCSK1 Gene

Suggested Antigen Peptide Sequences for PCSK1 Gene

Graphical View of Domain Structure for InterPro Entry

P29120

UniProtKB/Swiss-Prot:

NEC1_HUMAN :
  • Contains 1 peptidase S8 domain.
  • Belongs to the peptidase S8 family. Furin subfamily.
Domain:
  • Contains 1 peptidase S8 domain.
Family:
  • Belongs to the peptidase S8 family. Furin subfamily.
genes like me logo Genes that share domains with PCSK1: view

Function for PCSK1 Gene

Molecular function for PCSK1 Gene

GENATLAS Biochemistry:
proprotein convertase subtilisin kexin-like 1,primarily expressed in tissues and cells containing secretory granules,localized in the Golgi apparatus and possibly in endosomes,specifically cleaving BDNF,susceptibility gene for non insulin dependent diabetes (type II) and coronary artery disease
UniProtKB/Swiss-Prot CatalyticActivity:
Release of protein hormones, neuropeptides and renin from their precursors, generally by hydrolysis of -Lys-Arg- - bonds
UniProtKB/Swiss-Prot Function:
Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues. Substrates include POMC, renin, enkephalin, dynorphin, somatostatin, insulin and AGRP.

Enzyme Numbers (IUBMB) for PCSK1 Gene

Gene Ontology (GO) - Molecular Function for PCSK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004175 endopeptidase activity --
GO:0004252 serine-type endopeptidase activity TAS --
genes like me logo Genes that share ontologies with PCSK1: view
genes like me logo Genes that share phenotypes with PCSK1: view

Animal Models for PCSK1 Gene

MGI Knock Outs for PCSK1:

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PCSK1

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for PCSK1 Gene

Localization for PCSK1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PCSK1 Gene

Cytoplasmic vesicle, secretory vesicle. Note=Localized in the secretion granules.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PCSK1 Gene COMPARTMENTS Subcellular localization image for PCSK1 gene
Compartment Confidence
extracellular 4
golgi apparatus 2
mitochondrion 2
cytosol 1
lysosome 1
nucleus 1
vacuole 1

Gene Ontology (GO) - Cellular Components for PCSK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 8397508
GO:0030133 transport vesicle IEA --
GO:0034774 secretory granule lumen TAS --
genes like me logo Genes that share ontologies with PCSK1: view

Pathways & Interactions for PCSK1 Gene

genes like me logo Genes that share pathways with PCSK1: view

Pathways by source for PCSK1 Gene

Gene Ontology (GO) - Biological Process for PCSK1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis TAS 9207799
GO:0007267 cell-cell signaling TAS 9207799
GO:0008152 metabolic process TAS 9207799
GO:0016485 protein processing IBA --
GO:0016486 peptide hormone processing TAS --
genes like me logo Genes that share ontologies with PCSK1: view

No data available for SIGNOR curated interactions for PCSK1 Gene

Drugs & Compounds for PCSK1 Gene

(11) Drugs for PCSK1 Gene - From: NovoSeek, DrugBank, and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Insulin Regular Approved, Experimental, Investigational Pharma Target 0
Insulin, porcine Approved Pharma Target 0
Progesterone Approved Pharma Inhibition, Pore Blocker Endogenous progesterone receptor agonist 473
Melatonin Approved Nutra Antagonist Melatonin receptors MT inhibitor 215
Forskolin Experimental Pharma 0

(16) Additional Compounds for PCSK1 Gene - From: NovoSeek

genes like me logo Genes that share compounds with PCSK1: view

Transcripts for PCSK1 Gene

Unigene Clusters for PCSK1 Gene

Proprotein convertase subtilisin/kexin type 1:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PCSK1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCSK1 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16
SP1: -
SP2: -
SP3: -

Relevant External Links for PCSK1 Gene

GeneLoc Exon Structure for
PCSK1
ECgene alternative splicing isoforms for
PCSK1

Expression for PCSK1 Gene

mRNA expression in normal human tissues for PCSK1 Gene

mRNA differential expression in normal tissues according to GTEx for PCSK1 Gene

This gene is overexpressed in Brain - Hypothalamus (x14.5), Brain - Frontal Cortex (BA9) (x7.0), Brain - Anterior cingulate cortex (BA24) (x5.8), and Brain - Cortex (x4.6).

Protein differential expression in normal tissues from HIPED for PCSK1 Gene

This gene is overexpressed in Islet of Langerhans (35.4), Peripheral blood mononuclear cells (12.0), and Cerebrospinal fluid (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PCSK1 Gene



SOURCE GeneReport for Unigene cluster for PCSK1 Gene Hs.78977

genes like me logo Genes that share expression patterns with PCSK1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for PCSK1 Gene

Orthologs for PCSK1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PCSK1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PCSK1 35
  • 89.95 (n)
  • 94.69 (a)
PCSK1 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PCSK1 35
  • 91.54 (n)
  • 96.41 (a)
PCSK1 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pcsk1 35
  • 88.53 (n)
  • 92.56 (a)
Pcsk1 16
Pcsk1 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PCSK1 35
  • 99.65 (n)
  • 99.87 (a)
PCSK1 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PCSK1 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PCSK1 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves PCSK1 35
  • 76.35 (n)
  • 83.78 (a)
PCSK1 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PCSK1 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia pcsk1 35
  • 70.99 (n)
  • 75.27 (a)
zebrafish
(Danio rerio)
Actinopterygii pcsk1 35
  • 69.72 (n)
  • 73.99 (a)
pcsk1 36
  • 72 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Fur1 37
  • 50 (a)
Fur1 36
  • 27 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea aex-5 37
  • 35 (a)
bli-4 37
  • 46 (a)
kpc-1 37
  • 47 (a)
bli-4 35
  • 52.01 (n)
  • 48.83 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes KEX2 36
  • 30 (a)
OneToMany
Species with no ortholog for PCSK1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PCSK1 Gene

ENSEMBL:
Gene Tree for PCSK1 (if available)
TreeFam:
Gene Tree for PCSK1 (if available)

Paralogs for PCSK1 Gene

Paralogs for PCSK1 Gene

(6) SIMAP similar genes for PCSK1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PCSK1: view

Variants for PCSK1 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for PCSK1 Gene

P29120-NEC1_HUMAN
Genetic variations in PCSK1 define the body mass index quantitative trait locus 12 (BMIQ12) [MIM:612362]. Variance in body mass index is a susceptibility factor for obesity

Sequence variations from dbSNP and Humsavar for PCSK1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
VAR_013906 -
VAR_013907 -
VAR_013908 -
VAR_013909 -
VAR_022778 Proprotein convertase 1 deficiency (PC1 deficiency)

Variation tolerance for PCSK1 Gene

Residual Variation Intolerance Score: 24.85% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.25; 85.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PCSK1 Gene

HapMap Linkage Disequilibrium report
PCSK1
Human Gene Mutation Database (HGMD)
PCSK1

No data available for Structural Variations from Database of Genomic Variants (DGV) for PCSK1 Gene

Disorders for PCSK1 Gene

MalaCards: The human disease database

(16) MalaCards diseases for PCSK1 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
proprotein convertase-1 deficiency
  • obesity and endocrinopathy due to impaired processing of prohormones
obesity due to prohormone convertase i deficiency
  • pci deficiency
obesity with impaired prohormone processing
  • proprotein convertase 1/3 deficiency
obesity bmiq12
  • obesity, susceptibility to, bmiq12
adrenocorticotropic hormone deficiency
  • isolated acth deficiency
- elite association
Search PCSK1 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

NEC1_HUMAN
  • Proprotein convertase 1 deficiency (PC1 deficiency) [MIM:600955]: Characterized by obesity, hypogonadism, hypoadrenalism, reactive hypoglycemia as well as marked small-intestinal absorptive dysfunction It is due to impaired processing of prohormones. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for PCSK1

Genetic Association Database (GAD)
PCSK1
Human Genome Epidemiology (HuGE) Navigator
PCSK1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PCSK1
genes like me logo Genes that share disorders with PCSK1: view

No data available for Genatlas for PCSK1 Gene

Publications for PCSK1 Gene

  1. Chromosomal assignments of the genes for neuroendocrine convertase PC1 (NEC1) to human 5q15-21, neuroendocrine convertase PC2 (NEC2) to human 20p11.1-11.2, and furin (mouse 7[D1-E2] region). (PMID: 1765368) Seidah N.G. … ChrActien M. (Genomics 1991) 2 23 67
  2. ACTH: cellular peptide hormone synthesis and secretory pathways. (PMID: 19888563) Stevens A. … White A. (Results Probl Cell Differ 2010) 23 67
  3. Analysis of the cytoplasmic interaction between polycystin-1 and polycystin-2. (PMID: 19726544) Casuscelli J. … Boggon T.J. (Am. J. Physiol. Renal Physiol. 2009) 23 67
  4. Paired box 6 (PAX6) regulates glucose metabolism via proinsulin processing mediated by prohormone convertase 1/3 (PC1/3). (PMID: 19034419) Wen J.H. … Li L.S. (Diabetologia 2009) 23 67
  5. Adrenal gland development and defects. (PMID: 18279781) KempnA! P. … FlA1ck C.E. (Best Pract. Res. Clin. Endocrinol. Metab. 2008) 23 67

Products for PCSK1 Gene

Sources for PCSK1 Gene

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