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Aliases & Descriptions for PCNA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Cyclin 3 MGC8367 2 OTTHUMP00000030189 2 OTTHUMP00000030190 2 cyclin 2
Descriptions DNA polymerase delta auxiliary protein 2 proliferating cell nuclear antigen 2
Search outside databases for aliases for PCNA genePrevious GC identifers: GC20M005083 GC20M005090
Summaries for PCNA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PCNA : The protein encoded by this gene is found in the nucleus and is a cofactor of DNA polymerase delta.The encoded protein acts as a homotrimer and helps increase the processivity of leading strandsynthesis during DNA replication. In response to DNA damage, this protein is ubiquitinated and isinvolved in the RAD6-dependent DNA repair pathway. Two transcript variants encoding the sameprotein have been found for this gene. Pseudogenes of this gene have been described on chromosome4 and on the X chromosome. [provided by RefSeq] UniProtKB/Swiss-Prot: PCNA_HUMAN, P12004 Function : This protein is an auxiliary protein of DNA polymerase delta and is involved in thecontrol of eukaryotic DNA replication by increasing the polymerase's processibility duringelongation of the leading strand
Gene Wiki entry for PCNA
Genomic Location for PCNA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PCNA gene Entrez Gene cytogenetic band: 20pter-p12 Ensembl cytogenetic band: 20p12.3 HGNC cytogenetic band: 20pter-p12 PCNA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20M005043:
(about GC identifiers )
Start:
5,043,599 bp from pter
End:
5,055,268 bp from pter
Size:
11,670 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000020.9 NT_011387.8 Proteins for PCNA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PCNA_HUMAN, P12004 (See
protein sequence )Recommended Name: Proliferating cell nuclear antigen Size : 261 amino acids; 28769 Da
Subunit : Homotrimer. Interacts with KCTD10. Interacts with PPP1R15A (By similarity). Forms acomplex with activator 1 heteropentamer in the presence of ATP. Interacts with POLH, POLK, DNMT1,ERCC5/XPG, FEN1, CDC6, APEX2 and POLDIP2. Interacts with EXO1 and SHPRH. Forms a ternary complexwith DNTTIP2 and core histone. Interacts with POLD1, POLD3 and POLD4. Interacts with BAZ1B/WSTF;the interaction is direct
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1AXC (3D)
 1U76 (3D)
 1U7B (3D)
 1UL1 (3D)
 1VYJ (3D)
 1VYM (3D)
 1W60 (3D)
 2ZVK (3D)
 2ZVL (3D)
 2ZVM (3D)
 
Post-translational modifications:
Upon methyl methanesulfonate-induced DNA damage, mono-ubiquitinated by the UBE2B-RAD18 complex onLys-164. This induces non-canonical poly-ubiquitination on Lys-164 through 'Lys-63' linkage ofubiquitin moieties by the E2 complex UBE2N-UBE2V2 and the E3 ligases RNF8 and SHPRH, which arerequired for DNA repair1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002583.1 NP_872590.1 ENSEMBL proteins: ENSP00000384027 ENSP00000368458 ENSP00000368438 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for PCNA: Assays for PCNA:
Protein
Domains/ Families for PCNA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P12004 ProtoNet protein and cluster: P12004
1 Blocks protein family : IPB000730 Proliferating cell nuclear antigen UniProtKB/Swiss-Prot: PCNA_HUMAN, P12004 Similarity : Belongs to the PCNA family
Gene Function for PCNA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002592 Applied Biosystems Silencer ® siRNAs for PCNA Sigma-Aldrich siRNA and siRNA Panels for PCNA Sigma-Aldrich shRNA Panels and shRNA for PCNA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002592                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002592                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002592  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002592 UniProtKB/Swiss-Prot: PCNA_HUMAN, P12004 Function : This protein is an auxiliary protein of DNA polymerase delta and is involved in thecontrol of eukaryotic DNA replication by increasing the polymerase's processibility duringelongation of the leading strand
Genatlas biochemistry entry for PCNA :cell-cycle regulated nuclear protein,proliferating cell nuclear antigen,complexing with RFCs toform a processivity factor (sliding clamp),for DNA polymerases delta and epsilon,also complexingwith RFC,FEN1,GADD45,MSH2,MLH1,CDKN1A,LIG1,also involved in nucleotide mismatch repair (MM) andnucleotide excision repair (NER)
6 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Pcna) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for PCNA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for PCNA (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for PCNA 5/428 Interacting proteins for PCNA (ENSP00000368438 3 P12004 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 428
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for PCNA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for PCNA 10/35 Novoseek chemical compound relationships for PCNA gene (see all 35
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
bromodeoxyuridine
75.44
502
7855002 (6), 9332765 (5), 1363339 (5), 7735116 (5) (see all 99 )
dutp
66.03
48
9212738 (1), 9605486 (1), 16890762 (1), 17220163 (1) (see all 30 )
thymidine
61.12
160
10645230 (4), 8104445 (2), 7596173 (2), 10707869 (2) (see all 98 )
hematoxylin
54.92
31
7907850 (1), 7535869 (1), 17725699 (1), 8214260 (1) (see all 24 )
norcantharidin
53.24
9
16784656 (3), 15312360 (2), 15832413 (2), 15567755 (1) (see all 5 )
progesterone
47.74
120
14967954 (3), 12378862 (2), 14680611 (2), 12515910 (2) (see all 73 )
biotin-11-dutp
42.53
2
2055960 (1), 1687687 (1)
3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2h-tetrazolium
39.26
3
15817666 (1), 14578678 (1)
gp-4,5
37.31
6
10698628 (3), 9078370 (2), 11266590 (1)
reticulin
36.18
4
8214260 (1), 11511789 (1), 9568727 (1)
About this table
Transcripts for PCNA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002592 Sigma-Aldrich siRNA and siRNA Panels for PCNA Sigma-Aldrich shRNA Panels and shRNA for PCNA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002592 NM_182649
REFSEQ mRNAs for PCNA gene (2 alternative transcripts): NM_002592.2 NM_182649.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002592 NM_182649
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002592                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002592                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_002592  
Additional cDNA sequence: AK300558.1 AK311014.1 AK313286.1 BC000491.2 BC062439.1 CR536501.1 CR541799.1 CR617056.1 CR617091.1 CR619580.1 D28458.1 M15796.1
24/25 DOTS entries (see all 25
): DT.91770921 DT.100759039 DT.95196529 DT.100860261 DT.100030957 DT.91711062 DT.91770931 DT.219602 DT.120809816 DT.100860263 DT.95369760 DT.120809613 DT.120809442 DT.120809640 DT.100860268 DT.40188445 DT.91804433 DT.92367074 DT.120809925 DT.219603 DT.95369779 DT.120809841 DT.91770924 DT.91811414
24/733 AceView cDNA sequences (see all 733
):AA361459 BI831672 BM763985 BM770859 BM475636 BM685904 CB132811 BM692698 AU105826 BQ214140 BP870841 BU154500 CB108673 BP870671 W96444 BF794541 CD367010 BM841234 CB129877 BP870562 CB113248 BP354330 BP365286 BQ233597
highest scoring ESTs for PCNA :AV761744 AV762528 AW610258 AW821162 BF685141 BF979036 BG533897 BG707111 BI048151 CB990423
Unigene Cluster for PCNA: Proliferating cell nuclear antigen Hs.147433 [show with all ESTs ] Unigene Representative Sequence: BM462208 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for PCNA ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 SP1 :           -                 SP2 :   -   -   -     -                 SP3 :           -                 SP4 :                           SP5 :           -                
About this scheme ECgene alternative splicing isoforms for PCNA 3 Ensembl transcripts including schematic representations : ENST00000404149
ENST00000379160
ENST00000379143
Expression for PCNA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PCNA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PCNA 1 / 2 / 3
4 probe-sets matching PCNA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGCGTGAACCSOURCE GeneReport for Unigene cluster: Hs.147433 Expression variation in blood from EXPOLDB for PCNA
Orthologs for PCNA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PCNA gene from 5/26 species (see all 26
)
About this table Species with no ortholog for PCNA ENSEMBL Gene Tree for PCNA Paralogs for PCNA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Pseudogenes 3 related pseudogenes
SNPs/Variants for PCNA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PCNA (up to first 250kb)
Disorders & Mutations for PCNA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 176740 UniProtKB/Swiss-Prot: PCNA_HUMAN, P12004
Antibodies are present in sera from patients with systemic lupus erythematosus
10/98 Novoseek disease relationships for PCNA gene (see all 98
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
78.36
1918
1281387 (7), 9159335 (6), 8105885 (6), 7606900 (5) (see all 99 )
carcinoma
72.77
362
7909154 (5), 9306559 (5), 8096556 (5), 12390713 (5) (see all 99 )
carcinoma squamous cell
69.58
230
7617390 (4), 8907001 (4), 9001344 (3), 8920767 (3) (see all 99 )
metastasis
66.56
308
15204422 (5), 14669354 (5), 12740649 (4), 9407990 (4) (see all 99 )
dysplasia
65.69
188
7907076 (6), 9306559 (6), 8625229 (5), 8102179 (5) (see all 82 )
laryngeal squamous cell carcinoma
65.47
44
15844604 (3), 12740649 (2), 16995968 (2), 18607952 (2) (see all 19 )
hyperplasia
65.06
112
9066586 (4), 11748989 (3), 10349981 (3), 7927309 (2) (see all 63 )
cancer
61.92
287
8099982 (4), 10370689 (3), 8917358 (3), 9350310 (3) (see all 99 )
adenoma
60.18
177
7717318 (8), 8099982 (5), 12174886 (4), 8892593 (4) (see all 75 )
retinoblastoma
59.99
51
11835814 (2), 9396398 (2), 9109790 (1), 10212809 (1) (see all 35 )
About this table Genetic Association Database: PCNA Human Genome Epidemiology Navigator: PCNA (13 documents) Tumor Gene Database : PCNA
Medical News for PCNA (Possibly Related Articles in
Doctor's Guide )
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Publications for PCNA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/2637 PubMed articles for PCNA gene (see all 2637
): Structure of the human gene for the proliferating cell nuclear antigen. (PubMed id 2565339) 2, 3, 4 Travali S....Calabretta B. (1989) The DNA repair endonuclease XPG binds to proliferating cell nuclear antigen (PCNA) and shares sequence elements with the PCNA-binding regions of FEN-1 and cyclin-dependent kinase inhibitor p21. (PubMed id 9305916) 1, 3, 4 Gary R.... Park M.S. (1997) Structural basis for recruitment of human flap endonuclease 1 to PCNA. (PubMed id 15616578) 1, 3, 4 Sakurai S.... Hakoshima T. (2005) A defined human system that supports bidirectional mismatch-provoked excision. (PubMed id 15225546) 1, 3, 4 Dzantiev L....Modrich P. (2004) Stimulation of DNA synthesis activity of human DNA polymerase kappa by PCNA. (PubMed id 11784855) 1, 3, 4 Haracska L.... Prakash S. (2002) PCNA is ubiquitinated by RNF8. (PubMed id 18948756) 3, 4 Zhang S.... Lee M.Y.W.T. (2008) Polymorphisms of DNA repair genes and risk of non-small cell lung cancer. (PubMed id 16195237) 3, 6 Zienolddiny S....Haugen A. (2006) Human SHPRH is a ubiquitin ligase for Mms2-Ubc13-dependent polyubiquitylation of proliferating cell nuclear antigen. (PubMed id 17108083) 3, 4 Unk I.... Haracska L. (2006) Functional roles of p12, the fourth subunit of human DNA polymerase delta. (PubMed id 16510448) 3, 4 Li H....Lee M.Y. (2006) The Williams syndrome transcription factor interacts with PCNA to target chromatin remodelling by ISWI to replication foci. (PubMed id 15543136) 3, 4 Poot R.A....Varga-Weisz P.D. (2004)
Search for PCNA
(in PubMed ,
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Genome Databases showing PCNA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PCNA
(According to HUGE )
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--
Specialized Databases showing PCNA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for PCNA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for PCNA:
Recombinant Proteins (PCNA ) Antibodies (PCNA )
Search Tocris compounds for PCNA
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009