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Aliases for PCGEM1 Gene

Subcategory (RNA class) for PCGEM1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for PCGEM1 Gene

  • PCGEM1, Prostate-Specific Transcript (Non-Protein Coding) 2 3 5
  • Prostate-Specific Transcript 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 71 2 3
  • Prostate Cancer Associated Transcript 9 2 3
  • Prostate-Specific Non-Coding 3
  • Non-Protein Coding RNA 71 2
  • NCRNA00071 3
  • LINC00071 3
  • PCAT9 3

External Ids for PCGEM1 Gene

Previous GeneCards Identifiers for PCGEM1 Gene

  • GC02U990271
  • GC02P193322
  • GC02P193614
  • GC02P185474

Summaries for PCGEM1 Gene

GeneCards Summary for PCGEM1 Gene

PCGEM1 (PCGEM1, Prostate-Specific Transcript (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with PCGEM1 include Prostate Cancer.

Gene Wiki entry for PCGEM1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCGEM1 Gene

Genomics for PCGEM1 Gene

Genomic Location for PCGEM1 Gene

192,749,845 bp from pter
192,776,899 bp from pter
27,055 bases
Plus strand

Genomic View for PCGEM1 Gene

Genes around PCGEM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCGEM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCGEM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCGEM1 Gene

Proteins for PCGEM1 Gene

Post-translational modifications for PCGEM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCGEM1 Gene

Domains & Families for PCGEM1 Gene

Gene Families for PCGEM1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCGEM1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCGEM1 Gene

Function for PCGEM1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCGEM1 Gene

Localization for PCGEM1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PCGEM1 Gene

Pathways & Interactions for PCGEM1 Gene

SuperPathways for PCGEM1 Gene

No Data Available

Interacting Proteins for PCGEM1 Gene

Gene Ontology (GO) - Biological Process for PCGEM1 Gene


No data available for Pathways by source and SIGNOR curated interactions for PCGEM1 Gene

Transcripts for PCGEM1 Gene

mRNA/cDNA for PCGEM1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PCGEM1 Gene

PCGEM1, prostate-specific transcript (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PCGEM1 Gene

No ASD Table

Relevant External Links for PCGEM1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PCGEM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PCGEM1 Gene

mRNA differential expression in normal tissues according to GTEx for PCGEM1 Gene

This gene is overexpressed in Prostate (x50.3).

NURSA nuclear receptor signaling pathways regulating expression of PCGEM1 Gene:


SOURCE GeneReport for Unigene cluster for PCGEM1 Gene:

genes like me logo Genes that share expression patterns with PCGEM1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for PCGEM1 Gene

Orthologs for PCGEM1 Gene

Evolution for PCGEM1 Gene

Gene Tree for PCGEM1 (if available)
Gene Tree for PCGEM1 (if available)

No data available for Orthologs for PCGEM1 Gene

Paralogs for PCGEM1 Gene

No data available for Paralogs for PCGEM1 Gene

Variants for PCGEM1 Gene

Sequence variations from dbSNP and Humsavar for PCGEM1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10167106 -- 192,754,881(+) catcc(C/T)gaaac intron-variant
rs10167550 -- 192,755,306(+) CAGTA(A/T)TCAGG intron-variant
rs10167885 -- 192,755,562(+) TCAAT(C/T)CTCAC intron-variant
rs10171968 -- 192,753,335(+) tttac(A/G)ttagg intron-variant
rs10172161 -- 192,753,458(+) gtgag(A/G)acacg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PCGEM1 Gene

Variant ID Type Subtype PubMed ID
nsv1002677 CNV loss 25217958
nsv527665 CNV loss 19592680

Relevant External Links for PCGEM1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCGEM1 Gene

Disorders for PCGEM1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PCGEM1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, hereditary, 5
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for PCGEM1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with PCGEM1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PCGEM1 Gene

Publications for PCGEM1 Gene

  1. Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1. (PMID: 16569192) Fu X. … Srivastava S. (DNA Cell Biol. 2006) 2 3 22 64
  2. PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer. (PMID: 11050243) Srikantan V. … Srivastava S. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 22 64
  3. Association between lncrna PCGEM1 polymorphisms and prostate cancer risk. (PMID: 23459097) Xue Y. … Wu D. (Prostate Cancer Prostatic Dis. 2013) 2 3 64
  4. Risk of breast and prostate cancer is not associated with increased homozygosity in outbred populations. (PMID: 20407466) Enciso-Mora V. … Houlston R.S. (Eur. J. Hum. Genet. 2010) 3 46 64
  5. Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients. (PMID: 14724589) Petrovics G. … Srivastava S. (Oncogene 2004) 3 22 64

Products for PCGEM1 Gene

Sources for PCGEM1 Gene

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