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Aliases for PCGEM1 Gene

Subcategory (RNA class) for PCGEM1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PCGEM1 Gene

  • PCGEM1, Prostate-Specific Transcript (Non-Protein Coding) 2 3
  • Prostate-Specific Transcript 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 71 2 3
  • Prostate Cancer Associated Transcript 9 2 3
  • Prostate-Specific Non-Coding 3
  • Non-Protein Coding RNA 71 2
  • NCRNA00071 3
  • LINC00071 3
  • PCAT9 3

External Ids for PCGEM1 Gene

Previous GeneCards Identifiers for PCGEM1 Gene

  • GC02U990271
  • GC02P193322
  • GC02P193614
  • GC02P185474

Summaries for PCGEM1 Gene

GeneCards Summary for PCGEM1 Gene

PCGEM1 (PCGEM1, Prostate-Specific Transcript (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with PCGEM1 include prostate cancer.

Gene Wiki entry for PCGEM1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCGEM1 Gene

Genomics for PCGEM1 Gene

Genomic Location for PCGEM1 Gene

Chromosome:
2
Start:
192,749,845 bp from pter
End:
192,776,899 bp from pter
Size:
27,055 bases
Orientation:
Plus strand

Genomic View for PCGEM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PCGEM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCGEM1 Gene

Proteins for PCGEM1 Gene

Post-translational modifications for PCGEM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCGEM1 Gene

Domains & Families for PCGEM1 Gene

Gene Families for PCGEM1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCGEM1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCGEM1 Gene

Function for PCGEM1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCGEM1 Gene

Localization for PCGEM1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PCGEM1 Gene

Pathways & Interactions for PCGEM1 Gene

SuperPathways for PCGEM1 Gene

No Data Available

Interacting Proteins for PCGEM1 Gene

Gene Ontology (GO) - Biological Process for PCGEM1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCGEM1 Gene

Drugs & Compounds for PCGEM1 Gene

No Compound Related Data Available

Transcripts for PCGEM1 Gene

mRNA/cDNA for PCGEM1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PCGEM1 Gene

PCGEM1, prostate-specific transcript (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PCGEM1 Gene

No ASD Table

Relevant External Links for PCGEM1 Gene

GeneLoc Exon Structure for
PCGEM1
ECgene alternative splicing isoforms for
PCGEM1

Expression for PCGEM1 Gene

mRNA expression in normal human tissues for PCGEM1 Gene

mRNA differential expression in normal tissues according to GTEx for PCGEM1 Gene

This gene is overexpressed in Prostate (x50.3).

SOURCE GeneReport for Unigene cluster for PCGEM1 Gene Hs.546994

genes like me logo Genes that share expression patterns with PCGEM1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for PCGEM1 Gene

Orthologs for PCGEM1 Gene

Evolution for PCGEM1 Gene

ENSEMBL:
Gene Tree for PCGEM1 (if available)
TreeFam:
Gene Tree for PCGEM1 (if available)

No data available for Orthologs for PCGEM1 Gene

Paralogs for PCGEM1 Gene

No data available for Paralogs for PCGEM1 Gene

Variants for PCGEM1 Gene

Sequence variations from dbSNP and Humsavar for PCGEM1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs934947 -- 192,756,082(-) TTAAC(A/G)TATTC intron-variant
rs1347932 -- 192,748,345(-) ATACA(C/T)GGAAA upstream-variant-2KB
rs1439650 -- 192,775,926(-) TTTTT(C/T)TTGAG nc-transcript-variant
rs1439651 -- 192,774,816(-) GTAGG(G/T)TATCA intron-variant
rs1439652 -- 192,774,518(-) ACTCT(A/G)TAAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PCGEM1 Gene

Variant ID Type Subtype PubMed ID
nsv527665 CNV Loss 19592680
nsv875633 CNV Loss 21882294

Relevant External Links for PCGEM1 Gene

HapMap Linkage Disequilibrium report
PCGEM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCGEM1 Gene

Disorders for PCGEM1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PCGEM1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, hereditary, 5
- elite association

Relevant External Links for PCGEM1

Genetic Association Database (GAD)
PCGEM1
Human Genome Epidemiology (HuGE) Navigator
PCGEM1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PCGEM1
genes like me logo Genes that share disorders with PCGEM1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PCGEM1 Gene

Publications for PCGEM1 Gene

  1. Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1. (PMID: 16569192) Fu X. … Srivastava S. (DNA Cell Biol. 2006) 2 23 67
  2. PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer. (PMID: 11050243) Srikantan V. … Srivastava S. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 23 67
  3. Association between lncrna PCGEM1 polymorphisms and prostate cancer risk. (PMID: 23459097) Xue Y. … Wu D. (Prostate Cancer Prostatic Dis. 2013) 2 67
  4. Prostate cancer gene expression marker 1 (PCGEM1): a patented prostate- specific non-coding gene and regulator of prostate cancer progression. (PMID: 19891595) Ifere G.O. … Ananaba G.A. (Recent Pat DNA Gene Seq 2009) 23 67
  5. Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients. (PMID: 14724589) Petrovics G. … Srivastava S. (Oncogene 2004) 23 67

Products for PCGEM1 Gene

Sources for PCGEM1 Gene

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