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Aliases for PCDHB19P Gene

Aliases for PCDHB19P Gene

  • Protocadherin Beta 19 Pseudogene 2 3 5
  • PCDH-PSI5 3
  • PCDHB19 3

External Ids for PCDHB19P Gene

Previous GeneCards Identifiers for PCDHB19P Gene

  • GC05P140435
  • GC05P141202
  • GC05P140603
  • GC05P140647
  • GC05P140606
  • GC05P140612
  • GC05P140615
  • GC05P140619
  • GC05P140625
  • GC05P140629
  • GC05P140633
  • GC05P140636
  • GC05P140639
  • GC05P140643
  • GC05P140646
  • GC05P140650
  • GC05P141357
  • GC05P141506
  • GC05P141612
  • GC05P141715
  • GC05P141814
  • GC05P141913
  • GC05P142021

Summaries for PCDHB19P Gene

GeneCards Summary for PCDHB19P Gene

PCDHB19P (Protocadherin Beta 19 Pseudogene) is a Pseudogene.

Additional gene information for PCDHB19P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCDHB19P Gene

Genomics for PCDHB19P Gene

GeneHancer (GH) Regulatory Elements for PCDHB19P Gene

Promoters and enhancers for PCDHB19P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I140717 Promoter/Enhancer 1.6 Ensembl ENCODE 43.6 -520.8 -520787 2.7 MLX IRF4 ZNF213 E2F8 ZNF416 ZNF143 SP3 PPARGC1A MEF2D GLIS1 GC05P142207 VTRNA1-2 PURA PCDHB18P PCDHB19P PCDHB15 PCDHB12 PCDHB3 PCDHB9 PCDHB13
GH05I142221 Enhancer 1.4 Ensembl ENCODE dbSUPER 35.6 +982.7 982731 3.3 FOXA2 SMAD1 FEZF1 ZNF2 ZNF213 ZNF143 FOS SP3 JUNB REST PCDHB18P PCDHB15 PCDHGA7 PCDHGA6 PCDHGB4 PCDHGB3 PCDHB19P PCDHGA8 PCDHGA5 PCDHGA2
GH05I141679 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 21.2 +441.9 441888 4.7 HDGF ARNT SIN3A ZNF2 CBX5 ZNF213 FOS SP3 REST ZNF592 ARAP3 PCDHB19P HARS2 KIAA0141 PCDHB18P PCDHGA7 PCDH1 PCDH12 RNF14 HDAC3
GH05I140291 Enhancer 1.4 Ensembl ENCODE dbSUPER 31.9 -944.3 -944294 7.9 PKNOX1 SMAD1 FEZF1 ZNF2 NCOA2 ZNF213 KLF7 FOS ATF7 ZNF214 PCDHB18P PURA ENSG00000272108 PCDHB19P PCDHB9 PCDHB6 PCDHB5 PCDHB10 PCDHB17P PCDHB15
GH05I141968 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.2 +729.6 729644 3 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B RNF14 PCDH12 PCDHB18P PCDHGA6 PCDHGA7 LOC102723915 HDAC3 KIAA0141 PCDHGA5 PCDHB12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PCDHB19P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PCDHB19P gene promoter:

Genomic Locations for PCDHB19P Gene

Genomic Locations for PCDHB19P Gene
chr5:141,239,923-141,244,752
(GRCh38/hg38)
Size:
4,830 bases
Orientation:
Plus strand
chr5:140,619,518-140,624,320
(GRCh37/hg19)

Genomic View for PCDHB19P Gene

Genes around PCDHB19P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCDHB19P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCDHB19P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCDHB19P Gene

Proteins for PCDHB19P Gene

Post-translational modifications for PCDHB19P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCDHB19P Gene

Domains & Families for PCDHB19P Gene

Gene Families for PCDHB19P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCDHB19P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCDHB19P Gene

Function for PCDHB19P Gene

Phenotypes From GWAS Catalog for PCDHB19P Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCDHB19P Gene

Localization for PCDHB19P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCDHB19P Gene

Pathways & Interactions for PCDHB19P Gene

SuperPathways for PCDHB19P Gene

No Data Available

Interacting Proteins for PCDHB19P Gene

Gene Ontology (GO) - Biological Process for PCDHB19P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCDHB19P Gene

Drugs & Compounds for PCDHB19P Gene

No Compound Related Data Available

Transcripts for PCDHB19P Gene

mRNA/cDNA for PCDHB19P Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PCDHB19P Gene

Protocadherin beta 19 pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCDHB19P Gene

No ASD Table

Relevant External Links for PCDHB19P Gene

GeneLoc Exon Structure for
PCDHB19P
ECgene alternative splicing isoforms for
PCDHB19P

Expression for PCDHB19P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCDHB19P Gene

mRNA differential expression in normal tissues according to GTEx for PCDHB19P Gene

This gene is overexpressed in Testis (x23.8).

NURSA nuclear receptor signaling pathways regulating expression of PCDHB19P Gene:

PCDHB19P

SOURCE GeneReport for Unigene cluster for PCDHB19P Gene:

Hs.570898
genes like me logo Genes that share expression patterns with PCDHB19P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCDHB19P Gene

Orthologs for PCDHB19P Gene

Evolution for PCDHB19P Gene

ENSEMBL:
Gene Tree for PCDHB19P (if available)
TreeFam:
Gene Tree for PCDHB19P (if available)

No data available for Orthologs for PCDHB19P Gene

Paralogs for PCDHB19P Gene

No data available for Paralogs for PCDHB19P Gene

Variants for PCDHB19P Gene

Sequence variations from dbSNP and Humsavar for PCDHB19P Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1001559801 -- 141,244,317(+) T/C non_coding_transcript_variant
rs1002336027 -- 141,243,652(+) T/C non_coding_transcript_variant
rs1002658227 -- 141,242,527(+) G/T non_coding_transcript_variant
rs1002732743 -- 141,243,935(+) C/T non_coding_transcript_variant
rs10036693 -- 141,238,398(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PCDHB19P Gene

Variant ID Type Subtype PubMed ID
esv2759382 CNV gain 17122850
nsv1024594 CNV loss 25217958
nsv428127 CNV loss 18775914
nsv471634 CNV gain+loss 15918152
nsv599908 CNV loss 21841781
nsv964960 CNV duplication 23825009

Additional Variant Information for PCDHB19P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCDHB19P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCDHB19P Gene

Disorders for PCDHB19P Gene

Additional Disease Information for PCDHB19P

No disorders were found for PCDHB19P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCDHB19P Gene

Publications for PCDHB19P Gene

  1. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. (PMID: 11230163) Wu Q … Maniatis T (Genome research 2001) 2 3 58
  2. The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number. (PMID: 11322959) Vanhalst K … van Roy F (FEBS letters 2001) 2 3 58
  3. Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes. (PMID: 10716726) Wu Q … Maniatis T (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58
  4. A striking organization of a large family of human neural cadherin-like cell adhesion genes. (PMID: 10380929) Wu Q … Maniatis T (Cell 1999) 3 58

Products for PCDHB19P Gene

Sources for PCDHB19P Gene

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