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Aliases for PCDHB19P Gene

Aliases for PCDHB19P Gene

  • Protocadherin Beta 19 Pseudogene 2 3 5
  • PCDH-PSI5 3
  • PCDHB19 3

External Ids for PCDHB19P Gene

Previous GeneCards Identifiers for PCDHB19P Gene

  • GC05P140435
  • GC05P141202
  • GC05P140603
  • GC05P140647
  • GC05P140606
  • GC05P140612
  • GC05P140615
  • GC05P140619
  • GC05P140625
  • GC05P140629
  • GC05P140633
  • GC05P140636
  • GC05P140639
  • GC05P140643
  • GC05P140646
  • GC05P140650
  • GC05P141357
  • GC05P141506
  • GC05P141612
  • GC05P141715
  • GC05P141814

Summaries for PCDHB19P Gene

GeneCards Summary for PCDHB19P Gene

PCDHB19P (Protocadherin Beta 19 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCDHB19P Gene

Genomics for PCDHB19P Gene

Regulatory Elements for PCDHB19P Gene

Enhancers for PCDHB19P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G140588 1.6 FANTOM5 Ensembl ENCODE 27.3 -649.6 -649568 4.1 HDGF CREB3L1 ARNT ZFP64 ARID4B SIN3A ZNF2 ZNF143 FOS DEK APBB3 PCDHB19P CD14 IGIP PCDHB17P PCDHAC2 ENSG00000272070 SLC35A4 PCDHA2 PCDHB18P
GH05G141811 1.4 FANTOM5 ENCODE dbSUPER 9.7 +571.9 571945 1.4 CTCF MXI1 TEAD4 MAX RBBP5 SALL2 CHD7 ZNF2 RAD21 TEAD3 PCDHGB2 PCDHGC3 PCDHGC4 NDFIP1 PCDHA5 PCDHA10 PCDHAC2 PCDHGB1 PCDHB17P HDAC3
GH05G142119 0.8 dbSUPER 16.7 +880.8 880812 1.8 PKNOX1 ZFP64 ZNF121 SCRT2 ZNF202 ZNF680 ZNF654 ZBTB11 ZNF426 REST NDFIP1 PCDHB19P PCDHB17P PCDHB18P ENSG00000272070 PCDHGB2 HDAC3 KIAA0141 ENSG00000280047
GH05G141633 1.3 Ensembl ENCODE 9.8 +396.6 396593 5.2 HDGF AGO1 ARID4B SIN3A FEZF1 FOS ZNF263 SP3 SP5 JUNB RELL2 PCDHB19P PCDHGA6 HDAC3 PCDHGB8P PCDHGB6 GC05M141465
GH05G141679 1.3 ENCODE dbSUPER 9.8 +441.9 441888 4.7 HDGF ARNT SIN3A ZNF2 CBX5 FOS KLF13 ZNF263 SP3 REST KIAA0141 PCDHB18P ARAP3 PCDHGA7 PCDH1 PCDH12 RNF14 HDAC3 PCDHGA6 PCDHB11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PCDHB19P on UCSC Golden Path with GeneCards custom track

Genomic Location for PCDHB19P Gene

Chromosome:
5
Start:
141,239,923 bp from pter
End:
141,244,752 bp from pter
Size:
4,830 bases
Orientation:
Plus strand

Genomic View for PCDHB19P Gene

Genes around PCDHB19P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCDHB19P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCDHB19P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCDHB19P Gene

Proteins for PCDHB19P Gene

Post-translational modifications for PCDHB19P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCDHB19P Gene

Domains & Families for PCDHB19P Gene

Gene Families for PCDHB19P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCDHB19P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCDHB19P Gene

Function for PCDHB19P Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCDHB19P Gene

Localization for PCDHB19P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PCDHB19P Gene

Pathways & Interactions for PCDHB19P Gene

SuperPathways for PCDHB19P Gene

No Data Available

Interacting Proteins for PCDHB19P Gene

Gene Ontology (GO) - Biological Process for PCDHB19P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCDHB19P Gene

Drugs & Compounds for PCDHB19P Gene

No Compound Related Data Available

Transcripts for PCDHB19P Gene

mRNA/cDNA for PCDHB19P Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PCDHB19P Gene

Protocadherin beta 19 pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCDHB19P Gene

No ASD Table

Relevant External Links for PCDHB19P Gene

GeneLoc Exon Structure for
PCDHB19P
ECgene alternative splicing isoforms for
PCDHB19P

Expression for PCDHB19P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCDHB19P Gene

mRNA differential expression in normal tissues according to GTEx for PCDHB19P Gene

This gene is overexpressed in Testis (x23.8).

NURSA nuclear receptor signaling pathways regulating expression of PCDHB19P Gene:

PCDHB19P

SOURCE GeneReport for Unigene cluster for PCDHB19P Gene:

Hs.570898
genes like me logo Genes that share expression patterns with PCDHB19P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCDHB19P Gene

Orthologs for PCDHB19P Gene

Evolution for PCDHB19P Gene

ENSEMBL:
Gene Tree for PCDHB19P (if available)
TreeFam:
Gene Tree for PCDHB19P (if available)

No data available for Orthologs for PCDHB19P Gene

Paralogs for PCDHB19P Gene

No data available for Paralogs for PCDHB19P Gene

Variants for PCDHB19P Gene

Sequence variations from dbSNP and Humsavar for PCDHB19P Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1001559801 -- 141,244,317(+) GCACG(C/T)ACCAT nc-transcript-variant, upstream-variant-2KB
rs1002336027 -- 141,243,652(+) TTTGT(C/T)GTCAA nc-transcript-variant, upstream-variant-2KB
rs1002658227 -- 141,242,527(+) TATTT(G/T)TTCAA nc-transcript-variant
rs1002732743 -- 141,243,935(+) AATAA(C/T)ATTAC nc-transcript-variant, upstream-variant-2KB
rs10036693 -- 141,238,398(+) ATTTA(C/T)GAGGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PCDHB19P Gene

Variant ID Type Subtype PubMed ID
esv2759382 CNV gain 17122850
nsv1024594 CNV loss 25217958
nsv428127 CNV loss 18775914
nsv471634 CNV gain+loss 15918152
nsv599908 CNV loss 21841781
nsv964960 CNV duplication 23825009

Relevant External Links for PCDHB19P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCDHB19P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCDHB19P Gene

Disorders for PCDHB19P Gene

Relevant External Links for PCDHB19P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PCDHB19P

No disorders were found for PCDHB19P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCDHB19P Gene

Publications for PCDHB19P Gene

  1. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. (PMID: 11230163) Wu Q. … Maniatis T. (Genome Res. 2001) 2 3 64
  2. The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number. (PMID: 11322959) Vanhalst K. … van Roy F. (FEBS Lett. 2001) 2 3 64
  3. Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes. (PMID: 10716726) Wu Q. … Maniatis T. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64
  4. A striking organization of a large family of human neural cadherin- like cell adhesion genes. (PMID: 10380929) Wu Q. … Maniatis T. (Cell 1999) 3 64

Products for PCDHB19P Gene

Sources for PCDHB19P Gene

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