Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PCDHB19P Gene

Aliases for PCDHB19P Gene

  • Protocadherin Beta 19 Pseudogene 2 3 5
  • PCDH-PSI5 3
  • PCDHB19 3

External Ids for PCDHB19P Gene

Previous GeneCards Identifiers for PCDHB19P Gene

  • GC05P140435
  • GC05P141202
  • GC05P140603
  • GC05P140647
  • GC05P140606
  • GC05P140612
  • GC05P140615
  • GC05P140619
  • GC05P140625
  • GC05P140629
  • GC05P140633
  • GC05P140636
  • GC05P140639
  • GC05P140643
  • GC05P140646
  • GC05P140650
  • GC05P141357
  • GC05P141506
  • GC05P141612
  • GC05P141715
  • GC05P141814
  • GC05P141913

Summaries for PCDHB19P Gene

GeneCards Summary for PCDHB19P Gene

PCDHB19P (Protocadherin Beta 19 Pseudogene) is a Pseudogene.

Additional gene information for PCDHB19P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCDHB19P Gene

Genomics for PCDHB19P Gene

Regulatory Elements for PCDHB19P Gene

Enhancers for PCDHB19P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H142221 1.6 Ensembl ENCODE dbSUPER 24 +982.7 982731 3.3 FOXA2 FEZF1 ZNF2 FOS SP3 JUNB ZNF662 KAT8 ZNF610 SMARCA4 PCDHB18P PCDHGA7 PCDHGA6 PCDHB15 PCDHGB3 PCDHB19P PCDHGB4 PCDHGA8 PCDHGB8P PCDHGA5
GH05H140717 1.2 ENCODE 23.3 -520.8 -520787 2.7 MLX ZNF416 ZNF143 SP3 PPARGC1A MEF2D GLIS1 RCOR2 NBN KDM1A ANKHD1 HARS2 PURA HDAC3 WDR55 PCDHB18P PCDHB19P TMCO6 PCDHB12 HARS
GH05H141679 1.3 ENCODE dbSUPER 21.2 +441.9 441888 4.7 HDGF ARNT ZNF2 CBX5 FOS SP3 REST ZNF592 ZNF610 SMARCA4 PCDHB19P HARS2 KIAA0141 PCDHB18P ARAP3 PCDHGA7 PCDH1 PCDH12 RNF14 HDAC3
GH05H140250 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13 -987.4 -987401 4.6 NFIB ZNF366 FOS ETV6 RUNX3 ZNF362 CEBPB REST ZEB2 ZNF662 PFDN1 APBB3 PURA CD14 PCDHB18P HARS2 PCDHB19P PCDHB11 HBEGF PCDHB13
GH05H141868 1.7 FANTOM5 ENCODE dbSUPER 11.3 +634.5 634488 11 PKNOX1 FOXA2 ARID4B SIN3A YBX1 ZNF2 ZBTB7B YY1 ZNF766 ZNF143 MRPL11P2 PCDHB19P PCDHB5 PCDHB12 PCDHB3 PCDHB11 KIAA0141 HDAC3 PCDHGA4 LOC102723915
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PCDHB19P on UCSC Golden Path with GeneCards custom track

Genomic Locations for PCDHB19P Gene

Genomic Locations for PCDHB19P Gene
chr5:141,239,923-141,244,752
(GRCh38/hg38)
Size:
4,830 bases
Orientation:
Plus strand
chr5:140,619,518-140,624,320
(GRCh37/hg19)

Genomic View for PCDHB19P Gene

Genes around PCDHB19P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCDHB19P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCDHB19P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCDHB19P Gene

Proteins for PCDHB19P Gene

Post-translational modifications for PCDHB19P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCDHB19P Gene

Domains & Families for PCDHB19P Gene

Gene Families for PCDHB19P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCDHB19P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCDHB19P Gene

Function for PCDHB19P Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCDHB19P Gene

Localization for PCDHB19P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCDHB19P Gene

Pathways & Interactions for PCDHB19P Gene

SuperPathways for PCDHB19P Gene

No Data Available

Interacting Proteins for PCDHB19P Gene

Gene Ontology (GO) - Biological Process for PCDHB19P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCDHB19P Gene

Drugs & Compounds for PCDHB19P Gene

No Compound Related Data Available

Transcripts for PCDHB19P Gene

mRNA/cDNA for PCDHB19P Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PCDHB19P Gene

Protocadherin beta 19 pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PCDHB19P Gene

No ASD Table

Relevant External Links for PCDHB19P Gene

GeneLoc Exon Structure for
PCDHB19P
ECgene alternative splicing isoforms for
PCDHB19P

Expression for PCDHB19P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCDHB19P Gene

mRNA differential expression in normal tissues according to GTEx for PCDHB19P Gene

This gene is overexpressed in Testis (x23.8).

NURSA nuclear receptor signaling pathways regulating expression of PCDHB19P Gene:

PCDHB19P

SOURCE GeneReport for Unigene cluster for PCDHB19P Gene:

Hs.570898
genes like me logo Genes that share expression patterns with PCDHB19P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCDHB19P Gene

Orthologs for PCDHB19P Gene

Evolution for PCDHB19P Gene

ENSEMBL:
Gene Tree for PCDHB19P (if available)
TreeFam:
Gene Tree for PCDHB19P (if available)

No data available for Orthologs for PCDHB19P Gene

Paralogs for PCDHB19P Gene

No data available for Paralogs for PCDHB19P Gene

Variants for PCDHB19P Gene

Sequence variations from dbSNP and Humsavar for PCDHB19P Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1001559801 -- 141,244,317(+) GCACG(C/T)ACCAT nc-transcript-variant, upstream-variant-2KB
rs1002336027 -- 141,243,652(+) TTTGT(C/T)GTCAA nc-transcript-variant, upstream-variant-2KB
rs1002658227 -- 141,242,527(+) TATTT(G/T)TTCAA nc-transcript-variant
rs1002732743 -- 141,243,935(+) AATAA(C/T)ATTAC nc-transcript-variant, upstream-variant-2KB
rs10036693 -- 141,238,398(+) ATTTA(C/T)GAGGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PCDHB19P Gene

Variant ID Type Subtype PubMed ID
nsv964960 CNV duplication 23825009
nsv599908 CNV loss 21841781
nsv471634 CNV gain+loss 15918152
nsv428127 CNV loss 18775914
nsv1024594 CNV loss 25217958
esv2759382 CNV gain 17122850

Relevant External Links for PCDHB19P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCDHB19P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCDHB19P Gene

Disorders for PCDHB19P Gene

Relevant External Links for PCDHB19P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PCDHB19P

No disorders were found for PCDHB19P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCDHB19P Gene

Publications for PCDHB19P Gene

  1. Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. (PMID: 11230163) Wu Q … Maniatis T (Genome research 2001) 2 3 60
  2. The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number. (PMID: 11322959) Vanhalst K … van Roy F (FEBS letters 2001) 2 3 60
  3. Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes. (PMID: 10716726) Wu Q … Maniatis T (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 60
  4. A striking organization of a large family of human neural cadherin-like cell adhesion genes. (PMID: 10380929) Wu Q … Maniatis T (Cell 1999) 3 60

Products for PCDHB19P Gene

Sources for PCDHB19P Gene

Content
Loading form....