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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

PCDH10 Gene

protein-coding   GIFtS: 51
GCID: GC04P134070

protocadherin 10
 Explore 10 diseases affiliated with
PCDH10 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for PCDH10    

Aliases
for PCDH10 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Protocadherin 101 2
KIAA14001 3 5
OL-PCDH1 2
PCDH192
Ortholog Of OL-Pcdh2
Protocadherin-101

External Ids:    HGNC: 134041   Entrez Gene: 575752   Ensembl: ENSG000001386507   OMIM: 6082865   UniProtKB: Q9P2E73   

Export aliases for PCDH10 gene to outside databases

Previous GC identifers: GC04P135012 GC04P134373 GC04P134463 GC04P134529 GC04P134428 GC04P129800


Summaries
for PCDH10 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for PCDH10:
This gene belongs to the protocadherin gene family, a subfamily of the cadherin superfamily. The mRNA encodes a
cadherin-related neuronal receptor thought to play a role in the establishment and function of specific cell-cell
connections in the brain. This family member contains 6 extracellular cadherin domains, a transmembrane domain and a
cytoplasmic tail differing from those of the classical cadherins. Alternatively spliced transcripts encode isoforms
with unique cytoplasmic domains. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: PCD10_HUMAN, Q9P2E7
Function: Potential calcium-dependent cell-adhesion protein

Gene Wiki entry for PCDH10


Genomic Views
for PCDH10 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_016354.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the PCDH10 gene promoter:
         TBP   PPAR-gamma1   Pax-5   c-Myb   POU3F2 (N-Oct-5a)   POU3F2 (N-Oct-5b)   PPAR-gamma2   POU3F2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: PCDH10 promoter sequence
   Search SABiosciences Chromatin IP Primers for PCDH10

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat PCDH10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q28.3   Ensembl cytogenetic band:  4q28.3   HGNC cytogenetic band: 4q28.3

PCDH10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
PCDH10 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P134070:  view genomic region     (about GC identifiers)

Start:
 134,070,470 bp from pter      End:
 134,129,356 bp from pter
Size:
 58,887 bases      Orientation:
 plus strand

Proteins
for PCDH10 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: PCD10_HUMAN, Q9P2E7 (See protein sequence)
Recommended Name: Protocadherin-10 precursor  
Size: 1040 amino acids; 112936 Da
Subcellular location: Cell membrane; Single-pass type I membrane protein (By similarity)
Sequence caution: Sequence=BAA92638.1; Type=Erroneous initiation;
Secondary accessions: Q4W5F6

Explore the universe of human proteins at neXtProt for PCDH10: NX_Q9P2E7

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9P2E7

    • PCDH10 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_065866.1  NP_116586.1  

    ENSEMBL proteins: 
     ENSP00000264360  

    Human Recombinant Protein Products: 
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for PCDH10

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane IEA--
    GO:0016021integral to membrane IEA--


    PCDH10 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for PCDH10 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    PCDH10 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR015919 Cadherin-like
     IPR013164 Cadherin_N
     IPR020894 Cadherin_CS
     IPR002126 Cadherin

    Graphical View of Domain Structure for InterPro Entry Q9P2E7

    ProtoNet protein and cluster: Q9P2E7

    1 Blocks protein family: IPB002126 Cadherin

    UniProtKB/Swiss-Prot: PCD10_HUMAN, Q9P2E7
    Similarity: Contains 6 cadherin domains


    Function
    for PCDH10 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: PCD10_HUMAN, Q9P2E7
    Function: Potential calcium-dependent cell-adhesion protein

    miRNA
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    hsa-miR-3607-3p hsa-miR-25 hsa-miR-139-5p hsa-let-7a-2* hsa-miR-374a hsa-miR-30d hsa-miR-9 hsa-miR-3122
    SwitchGear 3'UTR luciferase reporter plasmid: PCDH10 3' UTR sequence
    Inhib. RNA
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    Gene Editing
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    Clone
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    Cell Line
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    Search LifeMap BioReagents cell lines for PCDH10

    In Situ Assay
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding IEA--


    PCDH10 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for PCDH10:
     Increased Salmonella enterica  

    Animal Models:
         3 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Pcdh10):
     growth/size  mortality/aging  nervous system 

    PCDH10 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for PCDH10 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for PCDH10

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007155cell adhesion ----
    GO:0007156homophilic cell adhesion IEA--


    PCDH10 for ontologies           About GeneDecksing



    Drugs & Compounds
    for PCDH10 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for PCDH10

    1 HMDB Compound for PCDH10    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    Search CenterWatch for drugs/clinical trials and news about PCDH10 / PCD10 

    Transcripts
    for PCDH10 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for PCDH10 gene (2 alternative transcripts): 
    NM_020815.1  NM_032961.1  

    Unigene Cluster for PCDH10:

    Protocadherin 10
    Hs.192859  [show with all ESTs]
    Unigene Representative Sequence: NM_032961
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000264360(uc003iha.3) ENST00000511112

    miRNA
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    8/62 QIAGEN miScript miRNA Assays for microRNAs that regulate PCDH10 (see all 62):
    hsa-miR-3607-3p hsa-miR-25 hsa-miR-139-5p hsa-let-7a-2* hsa-miR-374a hsa-miR-30d hsa-miR-9 hsa-miR-3122
    SwitchGear 3'UTR luciferase reporter plasmid: PCDH10 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for PCDH10 (see all 4)
    OriGene shRNA RFP: PCDH10
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat PCDH10
    Clone
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat PCDH10
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat PCDH10

    Additional cDNA sequence: 

    AB037821.1 AK024636.1 AK314377.1 AL157470.1 AY013874.1 BC111560.1 

    7 DOTS entries:

    DT.75100831  DT.92450844  DT.86844508  DT.95234435  DT.95268740  DT.121265976  DT.92450843 

    24/178 AceView cDNA sequences (see all 178):

    BQ013955 CR595751 AL541947 BM698760 AA910523 NM_020815 AI553815 BI913988 
    CR625417 AB037821 AL157470 BM692691 AI640307 NM_032961 AY013874 AW204397 
    CD634557 BG206631 BG210764 BG195783 BU733988 BP872306 AK024636 BG215004 

    GeneLoc Exon Structure


    Expression
    for PCDH10 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    PCDH10 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GCCAATTATA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    PCDH10 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    6 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BrainBlood Brain BarrierPostnatal Endothelial CellsBlood Brain Barrier, Endothelium
    EyeInner Nuclear LayerType1 Off Cone Bipolar CellsBipolar, Retina
    LimbZeugopodMesenchymal Condensate CellsBone, Cartilage
    BoneMandibular ProcessBone
    BoneMaxillary ProcessBone
    KidneyInterstitial StromaKidney
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    Definitive endoderm-like cells (A scalable, suspensi...)
    Definitive Endoderm (Generation of beta c...)

    See PCDH10 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for PCDH10

    SOURCE GeneReport for Unigene cluster: Hs.192859

    UniProtKB/Swiss-Prot: PCD10_HUMAN, Q9P2E7
    Tissue specificity: Moderately expressed in all regions of the brain examined, as well as in testis and ovary, and low
    expression in all other tissues tested

        SABiosciences Custom PCR Arrays for PCDH10
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    In Situ
    Assay Products:     
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    Orthologs
    for PCDH10 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of animals.

    Orthologs for PCDH10 gene from 5/13 species (see all 13)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves PCDH101 protocadherin 10 85.6(n)
    92.52(a)    		   408048  NM_214672.1  NP_999837.1 
    lizard
    (Anolis carolinensis)    		 Reptilia PCDH106
    		 --
    		 86(a)
    		 1 ↔ 1
    		 5(123970525-123992504)
    African clawed frog
    (Xenopus laevis)    		 Amphibia BM928974.12   -- 85.62(n)    BM928974.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii pcdh10b2 protocadherin 10b 78.48(n)   360138  AB086625.1 
    worm
    (Caenorhabditis elegans)    		 Secernentea cdh-106
    		 CaDHerin family member (cdh-10)
    		 7(a)
    		 1 → many
    		 IV(2436514-2463368)


    ENSEMBL Gene Tree for PCDH10 (if available)
    TreeFam Gene Tree for PCDH10 (if available) 

    Paralogs
    for PCDH10 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for PCDH10 gene
    PCDH172  PCDH72  PCDH11X2  PCDH202  PCDH12  PCDH11Y2  PCDH122  PCDH182  
    PCDH92  PCDH192  PCDH82  
    18/74 SIMAP similar genes for PCDH10 using alignment to 3 protein entries:     PCD10_HUMAN (see all proteins) (see all similar genes):
    DKFZp761O2023    ME6    FAT3    ME1    ME4    PCDHGA3
    PCDHA5    PCDHA7    PCDHB10    PCDHB13    PCDHB17    PCDHGA9
    PCDHGA10    ME3    PCDHA4    PCDHA9    PCDHAC1    PCDHGA1

    PCDH10 for paralogs           About GeneDecksing



    Genomic Variants
    for PCDH10 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing PCDH10
    DNA2.0 Custom Variant and Variant Library Synthesis for PCDH10

    Disorders / Diseases
    for PCDH10 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    PCDH10 for disorders           About GeneDecksing

    OMIM gene information: 608286    OMIM disorders: --

    10 diseases for PCDH10:    About MalaCards
    cervical cancer    cervicitis    gastric cancer    nasopharyngitis
    pancreatic cancer    pancreatitis    neuronitis    esophagitis
    prostatitis    carcinoma

    1 disease from the University of Copenhagen DISEASES database for PCDH10:
    Dravet Syndrome
    Human Genome Epidemiology (HuGE) Navigator: PCDH10 (1 document)

    Export disorders for PCDH10 gene to outside databases

    Publications
    for PCDH10 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for PCDH10 gene, integrated from 9 sources (see all 28):
    (articles sorted by number of sources associating them with PCDH10)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of three members of a novel subclass of protocadherins. (PubMed id 11549318)1, 2 Wolverton T. and Lalande M. (2001)
    2. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198)1, 2 Nagase T.... Ohara O. (2000)
    3. Phylogenetic analysis of the cadherin superfamily allows identification of six major subfamilies besides several solitary members. (PubMed id 10835267)1, 3 Nollet F....van Roy F. (2000)
    4. High-resolution melting analysis of PCDH10 methylatio n levels in gastric, colorectal and pancreatic cancers. (PubMed id 20353276)1, 9 Yu B....Zhang W. (2010)
    5. Methylation of protocadherin 10, a novel tumor suppressor, is associated with poor prognosis in patients with gastric cancer. (PubMed id 19084528)1, 9 Yu J....Sung J.J. (2009)
    6. Identifying autism loci and genes by tracing recent shared ancestry. (PubMed id 18621663)1, 9 Morrow E.M....Walsh C.A. (2008)
    7. Protocadherin-10 is involved in angiogenesis and methy lation correlated with multiple myeloma. (PubMed id 22245948)1 Li Y....Chen J.B. (2012)
    8. Role of PCDH10 and its hypermethylation in human gastr ic cancer. (PubMed id 22206871)1 Li Z....Qiao L. (2012)
    9. PCDH10 is a candidate tumour suppressor gene in medul loblastoma. (PubMed id 21597995)1 Bertrand K.C....Taylor M.D. (2011)
    10. Epigenetic inactivation of PCDH10 in human prostate c ancer cell lines. (PubMed id 21314642)1 Li Z....Cai Z. (2011)

    External Searches for PCDH10 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing PCDH10 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 57575 HGNC: 13404 AceView: PCDH10 Ensembl:ENSG00000138650 euGenes: HUgn57575
    ECgene: PCDH10 H-InvDB: PCDH10

    Other Databases showing PCDH10 gene

    (According to HUGE)
    About This Section
    HUGE: KIAA1400

    Specialized Databases showing PCDH10 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for PCDH10 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for PCDH10 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for PCDH10 gene:
    Search GeneIP for patents involving PCDH10

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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