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Aliases & Descriptions for PCCA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.4.1.3 3 OTTHUMP00000018635 2
Descriptions PCCa se alpha subunit 2 PCCa se subunit alpha 3 Propanoyl-CoA:carbon dioxide ligase subunit alpha 3 pccA complementation group 2 propanoyl-CoA:carbon dioxide ligase alpha subunit 2 propionyl Coenzyme A carboxylase, alpha polypeptide 2 propionyl-CoA carboxylase alpha chain, mitochondrial 2 propionyl-Coenzyme A carboxylase, alpha polypeptide 2
Search outside databases for aliases for PCCA genePrevious GC identifers: GC13P099101 GC13P095128 GC13P099577 GC13P098439
Summaries for PCCA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PCCA : The protein encoded by this gene is the alpha subunit of the heterodimeric mitochondrial enzymePropionyl-CoA carboxylase. PCCA encodes the biotin-binding region of this enzyme. Mutations ineither PCCA or PCCB (encoding the beta subunit) lead to an enzyme deficiency resulting inpropionic acidemia. Two transcript variants encoding different isoforms have been found for thisgene. [provided by RefSeq]
Genomic Location for PCCA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PCCA gene Entrez Gene cytogenetic band: 13q32 Ensembl cytogenetic band: 13q32.3 HGNC cytogenetic band: 13q32 PCCA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure
GeneLoc location for GC13P099539:
(about GC identifiers )
Start:
99,539,338 bp from pter
End:
99,980,690 bp from pter
Size:
441,353 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000013.9 NT_009952.14 Proteins for PCCA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PCCA_HUMAN, P05165 (See
protein sequence )Recommended Name: Propionyl-CoA carboxylase alpha chain, mitochondrial precursor Size : 703 amino acids; 77354 Da
Cofactor : Biotin
Subunit : Probably a dodecamer composed of six biotin-containing alpha subunits and six betasubunits
Subcellular location : Mitochondrion matrix
Sequence caution : Sequence=AAA60035.1; Type=Frameshift; Positions=349, 353, 355, 366;
PDB structure from and Proteopedia : 2CQY (3D)
 2JKU (3D)
 
Secondary accessions : Q15979
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000273.2 NP_001121164.1 ENSEMBL proteins: ENSP00000365430 ENSP00000365454 ENSP00000365456 ENSP00000365463 ENSP00000365462 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: PCCA 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005739 mitochondrion
IEA -- GO:0005759 mitochondrial matrix
IEA --
About this table Antibodies for PCCA: Assays for PCCA:
Protein
Domains/ Families for PCCA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P05165 ProtoNet protein and cluster: P05165
2 Blocks protein families : IPB000089 Biotin/lipoyl attachment IPB001882 Biotin-requiring enzyme UniProtKB/Swiss-Prot: PCCA_HUMAN, P05165 Similarity : Contains 1 ATP-grasp domainSimilarity : Contains 1 biotin carboxylation domainSimilarity : Contains 1 biotinyl-binding domain
Gene Function for PCCA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000282 Applied Biosystems Silencer ® siRNAs for PCCA Sigma-Aldrich siRNA and siRNA Panels for PCCA Sigma-Aldrich shRNA for PCCA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000282                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000282                                  untagged cDNA clones in CMV expression vector (see all 4 ): AF385926  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000282 UniProtKB/Swiss-Prot: PCCA_HUMAN, P05165 Catalytic activity : ATP + propanoyl-CoA + HCO(3)(-) = ADP + phosphate + (S)-methylmalonyl-CoAEnzyme Number (IUBMB): EC 6.4.1.3
Genatlas biochemistry entry for PCCA :propionyl-CoA carboxylase,alpha polypeptide,biotin-dependent,mitochondrial conversion of propionylCoA to methylmalonyl CoA,branched chain valine,isoleucine catabolism,energy pathway
5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Pcca ) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for PCCA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for PCCA (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: PCCA_HUMAN, P05165 Pathway : Metabolic intermediate metabolism; propionyl-CoA degradation; succinyl-CoA frompropionyl-CoA: step 1/3
5/20 Interacting proteins for PCCA (ENSP00000365463 3 P05165 2 ) via UniProtKB, MINT, and/or STRING (see all 20
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008152 metabolic process
IEA --
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Drugs & Compounds for PCCA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for PCCA 4 Novoseek chemical compound relationships for PCCA gene
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Transcripts for PCCA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000282 Sigma-Aldrich siRNA and siRNA Panels for PCCA Sigma-Aldrich shRNA for PCCA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000282 NM_001127692
REFSEQ mRNAs for PCCA gene (2 alternative transcripts): NM_000282.2 NM_001127692.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000282 NM_001127692
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000282                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000282                                  untagged cDNA clones in CMV expression vector (see all 4 ): AF385926  
Additional cDNA sequence: AF339804.1 AF385926.1 AK027256.1 AK055982.1 AK225288.1 AK225299.1 AK296771.1 AK298318.1 AK315503.1 AL122056.1 BC000140.2 CR620827.1 M13572.1 M26121.1 S79219.1 X14608.1 Z36837.1
24/25 DOTS entries (see all 25
): DT.116089 DT.92062413 DT.305424 DT.120792988 DT.120793019 DT.75153041 DT.100023746 DT.97845441 DT.75183769 DT.100749664 DT.120792882 DT.75158993 DT.92450626 DT.95076014 DT.100749665 DT.95076009 DT.100024251 DT.100803162 DT.102840884 DT.120793006 DT.91950617 DT.92004361 DT.92450630 DT.92450638
24/210 AceView cDNA sequences (see all 210
):BE047731 AI018725 AW631306 BP374134 BG315549 CA423971 BQ029477 BM783167 AK027256 BU688930 AI065036 AL122056 CA437126 BM669583 S55656 BE302246 AA481881 AA243068 AI801264 CA423534 CR620827 BG426535 AA333325 AW473129
highest scoring ESTs for PCCA :S79219 X14608 AA131070 AA454546 AA477467 AA481881 AA482063 AA535254 AA551867 AA608575
Unigene Cluster for PCCA: Propionyl Coenzyme A carboxylase, alpha polypeptide Hs.80741 [show with all ESTs ] Unigene Representative Sequence: AL122056 GeneLoc Exon Structure 5 Ensembl transcripts including schematic representations : ENST00000376254
ENST00000376277
ENST00000376279
ENST00000376286
ENST00000376285
Expression for PCCA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PCCA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PCCA 1 / 2 / 3
4 probe-sets matching PCCA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATGCTTTCACSOURCE GeneReport for Unigene cluster: Hs.80741 Expression variation in blood from EXPOLDB for PCCA
Orthologs for PCCA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PCCA gene from 5/11 species (see all 11
)
About this table Species with no ortholog for PCCA ENSEMBL Gene Tree for PCCA Paralogs for PCCA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for PCCA gene PC 2
SNPs/Variants for PCCA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PCCA (up to first 250kb)
Disorders & Mutations for PCCA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 232000 disorders : 606054 UniProtKB/Swiss-Prot: PCCA_HUMAN, P05165
Defects in PCCA are the cause of propionic acidemia type I (PA-1) [MIM:606054]. PA-1 is alife-threatening disease characterized by episodic vomiting, lethargy and ketosis, neutropenia,periodic thrombocytopenia, hypogammaglobulinemia, developmental retardation, and intolerance toprotein
5 Novoseek disease relationships for PCCA gene
About this table Genatlas disease: PCCA hyperglycinemia,ketotic,propionic acidemia A Human Gene Mutation Database : PCCA
Medical News for PCCA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for PCCA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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19/53 PubMed articles for PCCA gene (see all 53
): Cloning of functional alpha propionyl CoA carboxylase and correction of enzyme deficiency in pccA fibroblasts. (PubMed id 8434582) 1, 3, 4 Stankovics J. and Ledley F.D. (1993) Propionic acidemia: identification of twenty-four novel mutations in Europe and North America. (PubMed id 12559849) 1, 3, 4 Perez B.... Ugarte M. (2003) Mutation spectrum of the PCCA and PCCB genes in Japanese patients with propionic acidemia. (PubMed id 15059621) 1, 3, 4 Yang X.... Ohura T. (2004) Genetic heterogeneity in propionic acidemia patients with alpha- subunit defects: identification of five novel mutations, one of them causing instability of the protein. (PubMed id 10101253) 1, 3, 4 Richard E.... Ugarte M. (1999) Assignment of the human gene propionyl coenzyme A carboxylase, alpha-chain, (PCCA ) to chromosome 13q32 by in situ hybridization. (PubMed id 1427880) 1, 2, 3 Kennerknecht I....Hameister H. (1992) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Overview of mutations in the PCCA and PCCB genes causing propionic acidemia. (PubMed id 10502773) 3, 4 Ugarte M.... Gravel R.A. (1999) Coding sequence mutations in the alpha subunit of propionyl-CoA carboxylase in patients with propionic acidemia. (PubMed id 10329019) 3, 4 Campeau E.... Gravel R. (1999) Human mitochondrial propionyl-CoA carboxylase: localization of the N- terminus of the pro- and mature alpha chains in the deduced primary sequence of a full-length cDNA. (PubMed id 2740237) 3, 4 Lamhonwah A.-M.... Gravel R.A. (1989) Sequence homology around the biotin-binding site of human propionyl- CoA carboxylase and pyruvate carboxylase. (PubMed id 3555348) 3, 4 Lamhonwah A.-M.... Gravel R.A. (1987) Isolation of cDNA clones coding for the alpha and beta chains of human propionyl-CoA carboxylase: chromosomal assignments and DNA polymorphisms associated with PCCA and PCCB genes. (PubMed id 3460076) 3, 4 Lamhonwah A.-M.... Gravel R.A. (1986) Functional characterization of PCCA mutations causing propionic acidemia. (PubMed id 12385775) 1, 3 Clavero S....Desviat L.R. (2002) Structure of the PCCA gene and distribution of mutations causing propionic acidemia. (PubMed id 11592820) 1, 3 Campeau E....Gravel R.A. (2001) High frequency of large genomic deletions in the PCCA gene causing propionic acidemia. (PubMed id 19157943) 3 Desviat L.R....Ugarte M. (2009) Propionicacidemia: absence of alpha-chain mRNA in fibroblasts from patients of the pccA complementation group. (PubMed id 3687944) 3 Lamhonwah A.M. and Gravel R.A. (1987) Three novel splice mutations in the PCCA gene causing identical exon skipping in propionic acidemia patients. (PubMed id 9385377) 1 Richard E....Ugarte M. (1997) Array comparative genomic hybridization (aCGH) reveals the largest novel deletion in PCCA found in a Saudi family with propionic acidemia. (PubMed id 18790721) 1 Kaya N....Ozand P. (2008) Transfection screening for defects in the PCCA and PCCB genes encoding propionyl-CoA carboxylase subunits. (PubMed id 11914040) 1 Rodriguez-Pombo P....Rodriguez-Pombo P. (2002) Detection of a normally rare transcript in propionic acidemia patients with mRNA destabilizing mutations in the PCCA gene. (PubMed id 9887338) 1 Campeau E....Gravel R.A. (1999)
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Genome Databases showing PCCA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PCCA
(According to HUGE )
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Specialized Databases showing PCCA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
GeneReviews http://www.genetests.org/query?gene=PCCA
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-- Services for PCCA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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