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Aliases for PCAT6 Gene

Subcategory (RNA class) for PCAT6 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PCAT6 Gene

  • Prostate Cancer Associated Transcript 6 (Non-Protein Coding) 2 3 5
  • Prostate Cancer-Associated Noncoding RNA 1 2 3
  • KDM5B Antisense RNA 1 (Head To Head) 2 3
  • KDM5B Antisense RNA 1 (Non-Protein Coding) 3
  • Noncoding RNA-Activating 2 3
  • Onco-LncRNA-96 3
  • KDM5B-AS1 3
  • KDM5BAS1 3
  • NcRNA-A2 3
  • PCAN-R1 3

External Ids for PCAT6 Gene

Previous HGNC Symbols for PCAT6 Gene

  • KDM5B-AS1

Previous GeneCards Identifiers for PCAT6 Gene

  • GC01P202786

Summaries for PCAT6 Gene

GeneCards Summary for PCAT6 Gene

PCAT6 (Prostate Cancer Associated Transcript 6 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCAT6 Gene

Genomics for PCAT6 Gene

Regulatory Elements for PCAT6 Gene

Enhancers for PCAT6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F202834 0.6 Ensembl ENCODE 17.1 +25.6 25557 3.4 ATF1 PKNOX1 SIN3A GLIS2 ZNF766 YY2 KAT8 CREB3 MEF2D SMARCA4 KDM5B PCAT6 PRELP RABIF CYB5R1 CHIT1 MGAT4EP LOC730222
GH01F202840 0.2 Ensembl 12.5 +29.4 29355 0.2 TFDP1 SUZ12 ZBTB2 ZNF740 ID3 PCAT6 KDM5B LOC730222 MGAT4EP
GH01F202852 0.5 ENCODE 12.3 +41.5 41522 0.2 BCOR HDGF GTF2F1 CTCF CBX3 TBL1XR1 NFRKB ZMYM3 RAD21 YY1 PCAT6 KDM5B MGAT4EP LOC730222
GH01F202802 1.1 ENCODE 12.2 -5.0 -4958 6.1 PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 IPO9-AS1 PCAT6 IPO9 PRELP ZBED6 KDM5B GC01P202796
GH01F202856 1.4 Ensembl ENCODE 12 +48.6 48554 5.6 ZFP64 ARID4B SIN3A DMAP1 YY1 FOS ZNF263 SP3 SP5 NFYC ZBED6 RNPEP ENSG00000273478 LOC100506672 HNRNPA1P59 LOC102723465 LOC730222 ADIPOR1 RABIF PCAT6
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around PCAT6 on UCSC Golden Path with GeneCards custom track

Promoters for PCAT6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001753538 54 2001 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for PCAT6 Gene

Chromosome:
1
Start:
202,810,946 bp from pter
End:
202,812,156 bp from pter
Size:
1,211 bases
Orientation:
Plus strand

Genomic View for PCAT6 Gene

Genes around PCAT6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCAT6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT6 Gene

Proteins for PCAT6 Gene

Post-translational modifications for PCAT6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCAT6 Gene

Domains & Families for PCAT6 Gene

Gene Families for PCAT6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCAT6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCAT6 Gene

Function for PCAT6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT6 Gene

Localization for PCAT6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PCAT6 Gene

Pathways & Interactions for PCAT6 Gene

SuperPathways for PCAT6 Gene

No Data Available

Interacting Proteins for PCAT6 Gene

Gene Ontology (GO) - Biological Process for PCAT6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCAT6 Gene

Transcripts for PCAT6 Gene

mRNA/cDNA for PCAT6 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT6 Gene

No ASD Table

Relevant External Links for PCAT6 Gene

GeneLoc Exon Structure for
PCAT6
ECgene alternative splicing isoforms for
PCAT6

Expression for PCAT6 Gene

mRNA expression in normal human tissues for PCAT6 Gene

mRNA differential expression in normal tissues according to GTEx for PCAT6 Gene

This gene is overexpressed in Testis (x17.1).

NURSA nuclear receptor signaling pathways regulating expression of PCAT6 Gene:

PCAT6
genes like me logo Genes that share expression patterns with PCAT6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for PCAT6 Gene

Orthologs for PCAT6 Gene

Evolution for PCAT6 Gene

ENSEMBL:
Gene Tree for PCAT6 (if available)
TreeFam:
Gene Tree for PCAT6 (if available)

No data available for Orthologs for PCAT6 Gene

Paralogs for PCAT6 Gene

No data available for Paralogs for PCAT6 Gene

Variants for PCAT6 Gene

Sequence variations from dbSNP and Humsavar for PCAT6 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10699901 -- 202,809,680(+) GGCAA(-/AG)AGAGG upstream-variant-2KB
rs111633511 -- 202,811,170(+) GCCTC(C/T)GTCCC nc-transcript-variant, upstream-variant-2KB
rs114077339 -- 202,809,946(+) AAAAG(A/G)GGGGA upstream-variant-2KB
rs114678141 -- 202,811,979(+) ATTGT(A/G)AGCCT downstream-variant-500B
rs116729297 -- 202,810,243(+) TTTTA(A/G)CTTTA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PCAT6 Gene

Variant ID Type Subtype PubMed ID
nsv4110 CNV insertion 18451855
nsv521757 CNV loss 19592680
nsv832348 CNV loss 17160897
nsv832359 CNV loss 17160897

Relevant External Links for PCAT6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCAT6 Gene

Disorders for PCAT6 Gene

Relevant External Links for PCAT6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PCAT6

No disorders were found for PCAT6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCAT6 Gene

Publications for PCAT6 Gene

  1. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. (PMID: 23728290) Du Z. … Liu X.S. (Nat. Struct. Mol. Biol. 2013) 2 3 64
  2. Long noncoding RNAs with enhancer-like function in human cells. (PMID: 20887892) A9rom U.A. … Shiekhattar R. (Cell 2010) 2 3 64
  3. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski C.R. … Maher C.A. (RNA Biol 2015) 3 64

Products for PCAT6 Gene

Sources for PCAT6 Gene

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