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Aliases for PCAT6 Gene

Subcategory (RNA class) for PCAT6 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PCAT6 Gene

  • Prostate Cancer Associated Transcript 6 (Non-Protein Coding) 2 3 5
  • Prostate Cancer-Associated Noncoding RNA 1 2 3
  • KDM5B Antisense RNA 1 (Head To Head) 2 3
  • KDM5B Antisense RNA 1 (Non-Protein Coding) 3
  • Noncoding RNA-Activating 2 3
  • Onco-LncRNA-96 3
  • KDM5B-AS1 3
  • KDM5BAS1 3
  • NcRNA-A2 3
  • PCAN-R1 3

External Ids for PCAT6 Gene

Previous HGNC Symbols for PCAT6 Gene

  • KDM5B-AS1

Previous GeneCards Identifiers for PCAT6 Gene

  • GC01P202786

Summaries for PCAT6 Gene

GeneCards Summary for PCAT6 Gene

PCAT6 (Prostate Cancer Associated Transcript 6 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PCAT6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PCAT6 Gene

Genomics for PCAT6 Gene

Regulatory Elements for PCAT6 Gene

Enhancers for PCAT6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H202802 1.7 Ensembl ENCODE dbSUPER 12.2 -5.0 -4958 6 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 ZC3H11A ZBED6 KDM5B IPO9 RNPEP PCAT6 LOC100506672 ENSG00000273478 HNRNPA1P59 ELF3-AS1
GH01H202856 1.3 Ensembl ENCODE 12 +48.6 48554 5 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 FOS SP3 SP5 KDM5B LOC730222 ADIPOR1 RABIF PCAT6 MGAT4EP
GH01H202809 1.4 ENCODE dbSUPER 10.8 +0.7 691 3 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 KDM5B RNPEP ENSG00000273478 PCAT6 HNRNPA1P59 LAX1 MGAT4EP
GH01H202963 1.6 FANTOM5 ENCODE dbSUPER 9 +155.7 155709 6 HDGF PKNOX1 ARNT ZNF133 ARID4B SIN3A YBX1 ZBTB7B ZNF121 ZNF766 CYB5R1 BTG2 ZC3H11A KLHL12 LOC100506747 ADIPOR1 ELF3-AS1 KDM5B PCAT6 LOC148709
GH01H202835 0.8 ENCODE 17.1 +25.7 25746 3 PKNOX1 KLF1 DDX20 SIN3A MAX ZBTB7B RFX5 CTBP1 GATA3 POLR2A KDM5B PCAT6 RABIF CYB5R1 CHIT1 MGAT4EP LOC730222
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PCAT6 on UCSC Golden Path with GeneCards custom track

Promoters for PCAT6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000256221 -46 1401 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766

Genomic Location for PCAT6 Gene

Chromosome:
1
Start:
202,810,946 bp from pter
End:
202,812,156 bp from pter
Size:
1,211 bases
Orientation:
Plus strand

Genomic View for PCAT6 Gene

Genes around PCAT6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PCAT6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PCAT6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PCAT6 Gene

Proteins for PCAT6 Gene

Post-translational modifications for PCAT6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PCAT6 Gene

Domains & Families for PCAT6 Gene

Gene Families for PCAT6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PCAT6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PCAT6 Gene

Function for PCAT6 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for PCAT6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PCAT6 Gene

Localization for PCAT6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PCAT6 Gene

Pathways & Interactions for PCAT6 Gene

SuperPathways for PCAT6 Gene

No Data Available

Interacting Proteins for PCAT6 Gene

Gene Ontology (GO) - Biological Process for PCAT6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PCAT6 Gene

Drugs & Compounds for PCAT6 Gene

No Compound Related Data Available

Transcripts for PCAT6 Gene

mRNA/cDNA for PCAT6 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for PCAT6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for PCAT6 Gene

No ASD Table

Relevant External Links for PCAT6 Gene

GeneLoc Exon Structure for
PCAT6
ECgene alternative splicing isoforms for
PCAT6

Expression for PCAT6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PCAT6 Gene

mRNA differential expression in normal tissues according to GTEx for PCAT6 Gene

This gene is overexpressed in Testis (x17.1).

NURSA nuclear receptor signaling pathways regulating expression of PCAT6 Gene:

PCAT6
genes like me logo Genes that share expression patterns with PCAT6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PCAT6 Gene

Orthologs for PCAT6 Gene

Evolution for PCAT6 Gene

ENSEMBL:
Gene Tree for PCAT6 (if available)
TreeFam:
Gene Tree for PCAT6 (if available)

No data available for Orthologs for PCAT6 Gene

Paralogs for PCAT6 Gene

No data available for Paralogs for PCAT6 Gene

Variants for PCAT6 Gene

Sequence variations from dbSNP and Humsavar for PCAT6 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000139544 -- 202,812,387(+) ACCAG(G/T)CGCTC downstream-variant-500B
rs1000878184 -- 202,811,352(+) GAGGC(A/G)CTCCT nc-transcript-variant, upstream-variant-2KB
rs1001555099 -- 202,809,739(+) CGGGA(-/GACGGGG)GACGG upstream-variant-2KB
rs1001559841 -- 202,811,614(+) GGCCT(C/T)CGGTC intron-variant, nc-transcript-variant
rs1002393268 -- 202,811,000(+) CCGGA(A/C/G)CTCCC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PCAT6 Gene

Variant ID Type Subtype PubMed ID
nsv4110 CNV insertion 18451855
nsv521757 CNV loss 19592680
nsv832348 CNV loss 17160897
nsv832359 CNV loss 17160897

Relevant External Links for PCAT6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PCAT6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PCAT6 Gene

Disorders for PCAT6 Gene

Relevant External Links for PCAT6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PCAT6

No disorders were found for PCAT6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PCAT6 Gene

Publications for PCAT6 Gene

  1. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. (PMID: 23728290) Du Z … Liu XS (Nature structural & molecular biology 2013) 2 3 60
  2. Long noncoding RNAs with enhancer-like function in human cells. (PMID: 20887892) Ørom UA … Shiekhattar R (Cell 2010) 2 3 60
  3. Knockdown of Long Noncoding RNA PCAT6 Inhibits Proliferation and Invasion in Lung Cancer Cells. (PMID: 27458097) Wan L … Wang JJ (Oncology research 2016) 3 60
  4. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski CR … Maher CA (RNA biology 2015) 3 60

Products for PCAT6 Gene

Sources for PCAT6 Gene

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