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Aliases for PAXIP1-AS2 Gene

Subcategory (RNA class) for PAXIP1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for PAXIP1-AS2 Gene

  • PAXIP1 Antisense RNA 2 2 3 5
  • PAXIP1 Opposite Strand 2 3
  • PAXIP1OS 3

External Ids for PAXIP1-AS2 Gene

Previous HGNC Symbols for PAXIP1-AS2 Gene


Previous GeneCards Identifiers for PAXIP1-AS2 Gene

  • GC07P154723

Summaries for PAXIP1-AS2 Gene

GeneCards Summary for PAXIP1-AS2 Gene

PAXIP1-AS2 (PAXIP1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PAXIP1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PAXIP1-AS2 Gene

Genomics for PAXIP1-AS2 Gene

Regulatory Elements for PAXIP1-AS2 Gene

Enhancers for PAXIP1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H155917 1.3 Ensembl ENCODE 84 +990.2 990213 3.3 PKNOX1 FOXA2 MLX YBX1 DMAP1 ZNF2 YY1 ZNF207 ZNF548 FOS PAXIP1-AS2 RBM33 PAXIP1 ENSG00000273183 PAXIP1-AS1 RNF32 LOC389602 GC07M155822
GH07H155203 1.7 Ensembl ENCODE dbSUPER 30 +278.3 278287 6 HDGF PKNOX1 ARNT SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF766 CBX5 PAXIP1-AS2 PAXIP1 ENSG00000227365 LOC105375589 BLACE RBM33 LOC105375580 ENSG00000273183 PAXIP1-AS1 LOC105375586
GH07H155001 1.1 ENCODE 26.9 +75.0 75015 3.5 HDGF MLX ARNT SIN3A ZNF2 YY1 ZNF766 ZNF143 ZNF207 JUNB PAXIP1-AS2 PAXIP1-AS1 RBM33 HTR5A
GH07H155643 1.1 ENCODE 20.4 +716.6 716609 3.3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 RBM33 PAXIP1 PAXIP1-AS2 ENSG00000273183 LOC100506302
GH07H154927 1 ENCODE 22.1 +0.3 273 2.2 PKNOX1 ATF1 ARNT ZFP64 SIN3A FEZF1 BRCA1 ZNF2 YY1 GTF3C2 PAXIP1-AS2 RBM33 PAXIP1 ENSG00000272760
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PAXIP1-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for PAXIP1-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000220031 -98 1601 PKNOX1 ATF1 ARNT ZFP64 SIN3A FEZF1 BRCA1 ZNF2 YY1 GTF3C2

Genomic Locations for PAXIP1-AS2 Gene

Genomic Locations for PAXIP1-AS2 Gene
21,411 bases
Plus strand

Genomic View for PAXIP1-AS2 Gene

Genes around PAXIP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PAXIP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PAXIP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PAXIP1-AS2 Gene

Proteins for PAXIP1-AS2 Gene

Post-translational modifications for PAXIP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PAXIP1-AS2 Gene

Domains & Families for PAXIP1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PAXIP1-AS2 Gene

Function for PAXIP1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PAXIP1-AS2 Gene

Localization for PAXIP1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PAXIP1-AS2 Gene

Pathways & Interactions for PAXIP1-AS2 Gene

SuperPathways for PAXIP1-AS2 Gene

No Data Available

Interacting Proteins for PAXIP1-AS2 Gene

Gene Ontology (GO) - Biological Process for PAXIP1-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for PAXIP1-AS2 Gene

Drugs & Compounds for PAXIP1-AS2 Gene

No Compound Related Data Available

Transcripts for PAXIP1-AS2 Gene

mRNA/cDNA for PAXIP1-AS2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PAXIP1-AS2 Gene

No ASD Table

Relevant External Links for PAXIP1-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PAXIP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PAXIP1-AS2 Gene

genes like me logo Genes that share expression patterns with PAXIP1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PAXIP1-AS2 Gene

Orthologs for PAXIP1-AS2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PAXIP1-AS2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia PAXIP1-AS2 34
  • 97 (a)
Species where no ortholog for PAXIP1-AS2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PAXIP1-AS2 Gene

Gene Tree for PAXIP1-AS2 (if available)
Gene Tree for PAXIP1-AS2 (if available)

Paralogs for PAXIP1-AS2 Gene

No data available for Paralogs for PAXIP1-AS2 Gene

Variants for PAXIP1-AS2 Gene

Sequence variations from dbSNP and Humsavar for PAXIP1-AS2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000211148 -- 154,949,168(+) AGTGA(C/T)TTGGG intron-variant
rs1000314965 -- 154,948,801(+) TCCTC(A/T)AGGAC intron-variant
rs1000919049 -- 154,937,922(+) ATGTG(A/C)AAAGG intron-variant
rs1001111266 -- 154,943,875(+) TGTGA(A/C)AACAT intron-variant, utr-variant-3-prime
rs1001327878 -- 154,933,849(+) AATCT(C/T)GTCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PAXIP1-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv483088 CNV loss 15286789
nsv1033085 CNV gain 25217958

Variation tolerance for PAXIP1-AS2 Gene

Gene Damage Index Score: 0.46; 10.09% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PAXIP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PAXIP1-AS2 Gene

Disorders for PAXIP1-AS2 Gene

Relevant External Links for PAXIP1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for PAXIP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PAXIP1-AS2 Gene

Publications for PAXIP1-AS2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for PAXIP1-AS2 Gene

Sources for PAXIP1-AS2 Gene

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