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Aliases for PAX8 Gene

Aliases for PAX8 Gene

  • Paired Box 8 2 3
  • Paired Box Gene 8 2

External Ids for PAX8 Gene

Summaries for PAX8 Gene

Entrez Gene Summary for PAX8 Gene

  • This gene encodes a member of the paired box (PAX) family of transcription factors. Members of this gene family typically encode proteins that contain a paired box domain, an octapeptide, and a paired-type homeodomain. This nuclear protein is involved in thyroid follicular cell development and expression of thyroid-specific genes. Mutations in this gene have been associated with thyroid dysgenesis, thyroid follicular carcinomas and atypical follicular thyroid adenomas. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Mar 2010]

GeneCards Summary for PAX8 Gene

PAX8 (Paired Box 8) is a Protein Coding gene. Diseases associated with PAX8 include hypothyroidism, congenital, due to thyroid dysgenesis or hypoplasia and nephrogenic adenoma of urinary bladder. Among its related pathways are Pathways in cancer and Transcriptional misregulation in cancer. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and RNA polymerase II core promoter sequence-specific DNA binding. An important paralog of this gene is PAX4.

UniProtKB/Swiss-Prot for PAX8 Gene

  • Transcription factor for the thyroid-specific expression of the genes exclusively expressed in the thyroid cell type, maintaining the functional differentiation of such cells

Gene Wiki entry for PAX8 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PAX8 Gene

Genomics for PAX8 Gene

Genomic Location for PAX8 Gene

Start:
113,215,997 bp from pter
End:
113,278,950 bp from pter
Size:
62,954 bases
Orientation:
Minus strand

Genomic View for PAX8 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PAX8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PAX8 Gene

Regulatory Elements for PAX8 Gene

Proteins for PAX8 Gene

  • Protein details for PAX8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q06710-PAX8_HUMAN
    Recommended name:
    Paired box protein Pax-8
    Protein Accession:
    Q06710
    Secondary Accessions:
    • Q09155
    • Q16337
    • Q16338
    • Q16339
    • Q4ZG35
    • Q96J49

    Protein attributes for PAX8 Gene

    Size:
    450 amino acids
    Molecular mass:
    48218 Da
    Quaternary structure:
    • Interacts with WWTR1.

    Three dimensional structures from OCA and Proteopedia for PAX8 Gene

    Alternative splice isoforms for PAX8 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PAX8 Gene

Proteomics data for PAX8 Gene at MOPED

Post-translational modifications for PAX8 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PAX8 Gene

Domains for PAX8 Gene

Gene Families for PAX8 Gene

HGNC:
  • PRD :Homeoboxes / PRD class
  • PAX :Paired boxes

Protein Domains for PAX8 Gene

Suggested Antigen Peptide Sequences for PAX8 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q06710

UniProtKB/Swiss-Prot:

PAX8_HUMAN
Domain:
  • Contains 1 paired domain.:
    • Q06710
genes like me logo Genes that share domains with PAX8: view

Function for PAX8 Gene

Molecular function for PAX8 Gene

GENATLAS Biochemistry: paired box (DNA binding) containing protein 8,with a truncated homeo domain,expressed in fetal kidney,potential modulator of WT1 expression,in developing central nervous system and regulating thyroglobulin gene transcription (regulation of thyroid cells),also expressed in adult kidney
UniProtKB/Swiss-Prot Function: Transcription factor for the thyroid-specific expression of the genes exclusively expressed in the thyroid cell type, maintaining the functional differentiation of such cells

Gene Ontology (GO) - Molecular Function for PAX8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IDA 9388203
GO:0003677 DNA binding IMP 9590296
GO:0003700 sequence-specific DNA binding transcription factor activity IDA 9388203
GO:0004996 thyroid-stimulating hormone receptor activity TAS 9590296
GO:0005515 protein binding IPI 19010321
genes like me logo Genes that share ontologies with PAX8: view
genes like me logo Genes that share phenotypes with PAX8: view

Animal Models for PAX8 Gene

MGI Knock Outs for PAX8:
Targeting motifs for PAX8 Gene
HOMER Transcription Factor Regulatory Elements motif PAX8
  • Consensus sequence: GTCATGCHTGRCTGS Submotif: canonical Cell Type: Thyroid GeoId: GSE26938

No data available for Enzyme Numbers (IUBMB) , miRNA and Transcription Factor Targeting for PAX8 Gene

Localization for PAX8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PAX8 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PAX8 Gene COMPARTMENTS Subcellular localization image for PAX8 gene
Compartment Confidence
nucleus 5
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for PAX8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 15961562
GO:0005654 nucleoplasm ISS --
genes like me logo Genes that share ontologies with PAX8: view

Pathways for PAX8 Gene

genes like me logo Genes that share pathways with PAX8: view

Pathways by source for PAX8 Gene

Gene Ontology (GO) - Biological Process for PAX8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001655 urogenital system development ISS --
GO:0001656 metanephros development --
GO:0001658 branching involved in ureteric bud morphogenesis IEP 1337742
GO:0001822 kidney development IEP 15494458
GO:0001823 mesonephros development ISS --
genes like me logo Genes that share ontologies with PAX8: view

Compounds for PAX8 Gene

(9) Novoseek inferred chemical compound relationships for PAX8 Gene

Compound -log(P) Hits PubMed IDs
iodide 76.4 12
sodium iodide 73.2 2
sodium 39.9 9
thyroxine 25.9 1
forskolin 25 1
genes like me logo Genes that share compounds with PAX8: view

Transcripts for PAX8 Gene

Unigene Clusters for PAX8 Gene

Paired box 8:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PAX8 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b · 4c
SP1: - - -
SP2: - -
SP3:
SP4:

Relevant External Links for PAX8 Gene

GeneLoc Exon Structure for
PAX8
ECgene alternative splicing isoforms for
PAX8

Expression for PAX8 Gene

mRNA expression in normal human tissues for PAX8 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PAX8 Gene

This gene is overexpressed in Thyroid (32.5) and Kidney - Cortex (14.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for PAX8 Gene

SOURCE GeneReport for Unigene cluster for PAX8 Gene Hs.469728

mRNA Expression by UniProt/SwissProt for PAX8 Gene

Q06710-PAX8_HUMAN
Tissue specificity: Expressed in the excretory system, thyroid gland and Wilms tumors
genes like me logo Genes that share expressions with PAX8: view

Orthologs for PAX8 Gene

This gene was present in the common ancestor of animals.

Orthologs for PAX8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PAX8 35
  • 98.05 (n)
  • 97.87 (a)
PAX8 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PAX8 35
  • 93.56 (n)
  • 99.11 (a)
PAX8 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PAX8 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pax8 35
  • 91.41 (n)
  • 98.22 (a)
Pax8 16
Pax8 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PAX8 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PAX8 36
  • 83 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pax8 35
  • 91.04 (n)
  • 98 (a)
African clawed frog
(Xenopus laevis)
Amphibia Pax-8 35
tropical clawed frog
(Silurana tropicalis)
Amphibia pax8 35
  • 73.27 (n)
  • 77.48 (a)
zebrafish
(Danio rerio)
Actinopterygii pax8 35
  • 69.94 (n)
  • 70.56 (a)
pax8 36
  • 67 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta sv 36
  • 22 (a)
OneToMany
sv 37
  • 80 (a)
Poxn 37
  • 69 (a)
worm
(Caenorhabditis elegans)
Secernentea egl-38 36
  • 40 (a)
ManyToMany
npax-2 36
  • 26 (a)
ManyToMany
pax-2 36
  • 33 (a)
ManyToMany
K07C11.1 37
  • 65 (a)
egl-38 37
  • 72 (a)
K06B9.5 37
  • 72 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 46 (a)
ManyToMany
-- 36
  • 16 (a)
ManyToMany
Species with no ortholog for PAX8:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PAX8 Gene

ENSEMBL:
Gene Tree for PAX8 (if available)
TreeFam:
Gene Tree for PAX8 (if available)

Paralogs for PAX8 Gene

Paralogs for PAX8 Gene

Selected SIMAP similar genes for PAX8 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with PAX8: view

Variants for PAX8 Gene

Sequence variations from dbSNP and Humsavar for PAX8 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1478 -- 113,217,489(+) GGGGG(G/T)TAGAA utr-variant-3-prime
rs1479 -- 113,217,527(+) TCATT(G/T)ACAGT utr-variant-3-prime
rs752591 -- 113,215,594(+) AAAGC(A/G)ACCCC downstream-variant-500B
rs874898 -- 113,216,619(+) AAAGT(C/G)CTAAG utr-variant-3-prime
rs895412 -- 113,216,387(-) AGGAC(A/G)GAGGC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for PAX8 Gene

Variant ID Type Subtype PubMed ID
nsv459008 CNV Loss 19166990
nsv508162 CNV Loss 20534489
esv2720551 CNV Deletion 23290073
esv1341118 CNV Insertion 17803354
nsv874901 CNV Loss 21882294

Relevant External Links for PAX8 Gene

HapMap Linkage Disequilibrium report
PAX8
Human Gene Mutation Database (HGMD)
PAX8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PAX8 Gene

Disorders for PAX8 Gene

(1) OMIM Diseases for PAX8 Gene (167415)

UniProtKB/Swiss-Prot

PAX8_HUMAN
  • Hypothyroidism, congenital, non-goitrous, 2 (CHNG2) [MIM:218700]: A disease characterized by thyroid dysgenesis, the most frequent cause of congenital hypothyroidism, accounting for 85% of case. The thyroid gland can be completely absent (athyreosis), ectopically located and/or severely hypoplastic. Ectopic thyroid gland is the most frequent malformation, with thyroid tissue being found most often at the base of the tongue. {ECO:0000269 PubMed:11232006, ECO:0000269 PubMed:11502839, ECO:0000269 PubMed:9590296}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(32) Novoseek inferred disease relationships for PAX8 Gene

Disease -log(P) Hits PubMed IDs
thyroid ectopic 91.1 20
congenital hypothyroidism 89.3 23
carcinoma anaplastic 72.1 3
thyroid neoplasms 71.1 3
adenoma follicular 70.4 5

Genatlas disease for PAX8 Gene

congenital hypothyroidism with elevated levels of TSH and thyroid dysgenesis

Relevant External Links for PAX8

Genetic Association Database (GAD)
PAX8
Human Genome Epidemiology (HuGE) Navigator
PAX8
genes like me logo Genes that share disorders with PAX8: view

Publications for PAX8 Gene

  1. Distinct functional properties of three human paired-box-protein, PAX8, isoforms generated by alternative splicing in thyroid, kidney and Wilms' tumors. (PMID: 7737192) Poleev A. … Plachov D. (Eur. J. Biochem. 1995) 3 4 23
  2. PAX8, a human paired box gene: isolation and expression in developing thyroid, kidney and Wilms' tumors. (PMID: 1337742) Poleev A. … Plachov D. (Development 1992) 3 4 23
  3. Alternative splicing of Pax-8 gene transcripts is developmentally regulated and generates isoforms with different transactivation properties. (PMID: 8413205) Kozmik Z. … Busslinger M. (Mol. Cell. Biol. 1993) 3 4 23
  4. PAX8 mutations associated with congenital hypothyroidism caused by thyroid dysgenesis. (PMID: 9590296) Macchia P.E. … Di Lauro R. (Nat. Genet. 1998) 3 4 23
  5. A novel mutation (Q40P) in PAX8 associated with congenital hypothyroidism and thyroid hypoplasia: evidence for phenotypic variability in mother and child. (PMID: 11502839) Congdon T. … Kopp P. (J. Clin. Endocrinol. Metab. 2001) 3 4 23

Products for PAX8 Gene

  • Addgene plasmids for PAX8

Sources for PAX8 Gene

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