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PAX4 Gene

protein-coding   GIFtS: 66

GC07M127037
paired box 4
(Previous name: paired box gene 4 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
KPD 2, 5
MGC129960 2
MODY9 2, 5
Descriptions
paired box 4 2
paired box gene 4 1, 2
paired domain gene 4 2
External Ids
HGNC: 86181
Entrez Gene: 50782
UniProtKB: O433163
Ensembl: ENSG000001063317
Search outside databases for aliases for PAX4 gene

Previous GC identifers: GC07M125728 GC07M126791 GC07M126804 GC07M126844

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for PAX4:
This gene is a member of the paired box (PAX) family of transcription factors. Members of this gene
family typically contain a paired box domain, an octapeptide, and a paired-type homeodomain. These
genes play critical roles during fetal development and cancer growth. The paired box 4 gene is
involved in pancreatic islet development and mouse studies have demonstrated a role for this gene
in differentiation of insulin-producing beta cells. [provided by RefSeq]

UniProtKB/Swiss-Prot: PAX4_HUMAN, O43316
Function: Plays an important role in the differentiation and development of pancreatic islet beta
cells. Transcriptional repressor that binds to a common element in the glucagon, insulin and
somatostatin promoters. Competes with PAX6 for this same promoter binding site. The Pax4v isoform
appears to be a dominant negative form antagonizing PAX4 transcriptional activity

Gene Wiki entry for PAX4

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the PAX4 gene  

Entrez Gene cytogenetic band: 7q32   Ensembl cytogenetic band:  7q32.1   HGNC cytogenetic band: 7q32.1

PAX4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M127037:     (about GC identifiers)

Start:
127,037,582 bp from pter
End:
127,043,218 bp from pter
Size:
5,637 bases
Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 126,633,785-126,639,226     
RefSeq DNA sequence:
NC_000007.12  NT_007933.14  NT_079596.2  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PAX4_HUMAN, O43316 (See protein sequence)
Recommended Name: Paired box protein Pax-4  
Size: 350 amino acids; 37833 Da
Subcellular location: Nucleus
Sequence caution: Sequence=AC073934; Type=Miscellaneous discrepancy; Note=According to the human
genome assembly there is a stop codon in position 349;
Secondary accessions: O95161 Q6B0H0
Alternative splicing: 3 isoforms:  O43316-1   O43316-2   O43316-4   

REFSEQ proteins: NP_006184.2  

ENSEMBL proteins: 
ENSP00000368014 ENSP00000339906 ENSP00000344297 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (PAX4)
Human Recombinant Proteins from Abnova (PAX4)
              OriGene Purified Recombinant Human Protein: PAX4 

1 Gene Ontology (GO) cellular component term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus IEA--
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Antibodies for PAX4: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for PAX4
R&D Systems Antibodies for PAX4
Antibodies from Abcam (PAX4), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (PAX4)
Novus Biologicals Antibody for PAX4

Assays for PAX4: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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5 InterPro domains/families:
 IPR011991 Wing_hlx_DNA_bd
 IPR001356 Homeobox
 IPR017970 Homeobox_CS
 IPR001523 Paired_box_N
 IPR012287 Homeodomain-rel


   GeneDecks  PAX4 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry O43316

ProtoNet protein and cluster: O43316

1 Blocks protein family: IPB001523 Paired box protein

UniProtKB/Swiss-Prot: PAX4_HUMAN, O43316
Similarity: Belongs to the paired homeobox family
Similarity: Contains 1 homeobox DNA-binding domain
Similarity: Contains 1 paired domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (PAX4)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (PAX4)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006193

              Applied Biosystems Silencer® siRNAs for PAX4

              Sigma-Aldrich siRNA for PAX4  
                     Sigma-Aldrich shRNA for PAX4  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006193
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006193
                                 untagged cDNA clone in CMV expression vector: NM_006193 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_006193

UniProtKB/Swiss-Prot: PAX4_HUMAN, O43316
Function: Plays an important role in the differentiation and development of pancreatic islet beta
cells. Transcriptional repressor that binds to a common element in the glucagon, insulin and
somatostatin promoters. Competes with PAX6 for this same promoter binding site. The Pax4v isoform
appears to be a dominant negative form antagonizing PAX4 transcriptional activity

Genatlas biochemistry entry for PAX4:
paired box (DNA binding) containing protein 4,with homeo domain,predominantly expressed in placenta
and skeletal muscle,also expressed in heart and pancreas,essential for differentiation of
insulin-producing beta-cells

4 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Pax4):

digestive/alimentaryendocrine/exocrine glandgrowth/sizelethality-postnatal

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0003700 transcription factor activity IEA--
GO:0043565 sequence-specific DNA binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Kegg Pathway  (Kegg details for PAX4):
 hsa04950 Maturity onset diabetes of the young

   GeneDecks  PAX4 for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  PAX4 


5/10 Interacting proteins for PAX4 (ENSP000003680143) via UniProtKB, MINT, and/or STRING (see all 10 )
InteractantInteraction Details
GeneCardExternal ID(s)
INSENSP000003707313STRING (score=.983)
NEUROG3ENSP000002424623STRING (score=.972)
GCGENSP000003646473STRING (score=.971)
INHBEENSP000002666463STRING (score=.949)
SLC2A2ENSP000003235683STRING (score=.887)
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4 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006355 regulation of transcription, DNA-dependent IEA--
GO:0007275 multicellular organismal development IEA--
GO:0009887 organ morphogenesis TAS9480859
GO:0030154 cell differentiation IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for PAX4
1 Novoseek chemical compound relationship for PAX4 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
glucose 39.06 8 17003335 (2), 17989064 (2), 12200761 (1), 11825903 (1) (see all 6)
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(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (PAX4)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (PAX4)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006193

              Sigma-Aldrich siRNA for PAX4  
                     Sigma-Aldrich shRNA for PAX4  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_006193  

REFSEQ mRNAs for PAX4 gene: 

NM_006193.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_006193  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006193
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006193
                                 untagged cDNA clone in CMV expression vector: NM_006193 

Additional cDNA sequence: 

AB008913.1 AF043978.1 BC074761.2 BC107149.2 BC107150.1 DQ442656.1 

1 DOTS entry:

DT.91748890 

5 AceView cDNA sequences:

AB008913 NM_006193 AF043978 BC074761 BV198517 

highest scoring ESTs for PAX4:

AB008913 AF043978 BC074761 NM_006193 BC107149 BC107150 DQ442656 

Unigene Cluster for PAX4:

Paired box 4
Hs.129706
Unigene Representative Sequence: AF043978


GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for PAX4

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10
SP1:                    -                                   -                     
SP2:                    -                                   -           -         
SP3:                                                                              

About this scheme

ECgene alternative splicing isoforms for PAX4

3 Ensembl transcripts including schematic representations:
ENST00000378740  ENST00000341640  ENST00000338516  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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PAX4 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for PAX4

1 / 2 / 3

6 probe-sets matching PAX4 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
31740_s_at2, 3 U95-A 1 1.00 1.00 0.45 1.49 AB008913 1.00 1.00 1.00 1

31741_at2, 3 U95-A 1 1.00 1.00 0.71 0.55 AF043978 1.00 1.00 1.00 1

207867_at2, 3 U133-A 1 1.00 1.00 -- -- NM_006193 0.60 1.00 0.82 1

211176_s_at2, 3 U133-A 1 1.00 1.00 -- -- AB008913 1.00 1.00 1.00 1

207867_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

211176_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  PAX4 for binary patterns associated with the probe-sets selected above  
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CATCCCCAAA

SOURCE GeneReport for Unigene cluster: Hs.129706

Expression variation in blood from EXPOLDB for PAX4

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for PAX4 gene from 4 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
PAX41   -- paired box 4 90.2(n)
89.02(a)
482268  XM_539387.2  XP_539387.2 
chimpanzee
(Pan troglodytes)
PAX41   -- paired box 4 99.42(n)
99.42(a)
472503  XM_001151306.1  XP_001151306.1 
rat
(Rattus norvegicus)
Pax41   -- paired box 4 82.21(n)
78.83(a)
83630  NM_031799.1  NP_113987.1 
mouse
(Mus musculus)
Pax41, 5 6 (9.00 cM)5
paired box gene 41, 5 81.39(n)1
78.53(a)1
185061  NM_011038.11  NP_035168.11 
 AB0089125  AB0105575  (see all 17)
About this table        Species with no ortholog for PAX4

ENSEMBL Gene Tree for PAX4
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for PAX4 gene
PAX72  PAX32  PAX62  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/70 NCBI SNPs in PAX4 are shown (see all 70 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 42)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 7 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs7127031,2
A,C,F,H,O127044734(-) TTCTGA/GTGAGG 1 -- ng3112Minor allele frequency- G:0.43EA NA EU WA 2272
rs7127001,2
A,C,F,H,O127038143(-) ACACTG/AGCCTT 1 -- ut31 ese38Minor allele frequency- A:0.34MN EU EA NA 1535
rs3275161,2
A,C,F,H127043031(+) CATACG/CCGCCA 1 -- ng314Minor allele frequency- C:0.47EU EA WA 412
rs3275121,2
A,C,F,H127044487(+) CACCAA/GTGAAA 1 -- ng314Minor allele frequency- G:0.48EU EA WA 392
rs3275151,2
C,F,H127043513(-) TTCAAG/TAAAGA 1 -- ng31 tfbs315Minor allele frequency- T:0.05EA NA NS EU WA 728
rs7127011,2
C,F,H127038424(-) CTGTCC/ACCTGG 1 P/H mis1 ese39Minor allele frequency- A:0.41EU EA WA NA 912
rs22335781,2
C,F,H127041787(-) GCACAC/TGGCTC 1 R/W mis1 ese312Minor allele frequency- T:0.02NA EU EA WA 1048
rs22335801,2
C,F,H127040786(-) GGCCCA/GTGGAA 1 R/H mis1 ese312Minor allele frequency- N:0.00EU EA WA NA 1052
--
rs7126991,2
A,C,F127037833(+) ATAATA/GTCAgt 1 -- ut31 ese33Minor allele frequency- G:0.35NA 138
rs3275111,2
A,C,F127044497(+) ACAAAG/TAATTA 1 -- ng311Minor allele frequency- T:0.28EA 1474
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HapMap Linkage Disequilibrium images for PAX4 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 167413   disorders: 612225  125853  612227  

UniProtKB/Swiss-Prot: PAX4_HUMAN, O43316

  • Defects in PAX4 are a cause of noninsulin-dependent diabetes mellitus (NIDDM)
    [MIM:125853]; also known as diabetes mellitus type 2 or maturity-onset diabetes. NIDDM is
    characterized by an autosomal dominant mode of inheritance, onset during adulthood and insulin
    resistance
  • Genetic variations in PAX4 are associated with susceptibility to insulin-dependent
    diabetes mellitus (IDDM) [MIM:222100]. IDDM normally starts in childhood or adolescence and is
    caused by the body's own immune system which destroys the insulin-producing beta cells in the
    pancreas. Classical features are polydipsia, polyphagia and polyuria, due to hyperglycemia-induced
    osmotic diuresis
  • Genetic variations in PAX4 are associated with susceptibility to ketosis-prone diabetes
    mellitus (KPD) [MIM:612227]. KPD belongs to a rare subgroup of type 2 diabetes with severe insulin
    deficiency, mostly observed in subjects of sub-Saharan African ancestry, such as west Africans,
    Caribbeans and African-Americans. Its phenotype is distinct from the common type 2 and type 1
    diabetes. It is characterized by a fulminant initial insulin dependence, without the immunological
    markers observed in classical type 1 diabetes, followed by a subsequent clinical course which
    varies from non-insulin treated type 2 diabetes to insulin-dependent idiopathic type 1 diabetes. A
    severe dysfunction of the insulin-producing beta-cells is attested to by the observation that 25%
    of the subjects are insulin dependent at diabetes onset, whereas the remaining 75% will develop
    permanent insulin dependence within 10 years
  • Defects in PAX4 are the cause of maturity-onset diabetes of the young type 9 (MODY9)
    [MIM:612225]. MODY [MIM:606391] is a form of diabetes mellitus characterized by an autosomal
    dominant mode of inheritance, age of onset of 25 years or younger and a primary defect in insulin
    secretion
  • 8 Novoseek disease relationships for PAX4 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    insulinoma 62.04 12 11263967 (5), 17260022 (4), 9480859 (1), 18234907 (1) (see all 5)
    diabetes mellitus insulin-dependent 48.46 6 16132946 (1), 17633464 (1), 16132953 (1), 16132962 (1) (see all 6)
    niddm 31.83 5 16423628 (3), 10967107 (1), 17426099 (1)
    glucose intolerance 29.09 1 17003335 (1)
    hyperglycemia 26.54 1 17989064 (1)
    hyperinsulinemia 18.89 1 16988001 (1)
    tumors 0.00 2 18949370 (2)
    insulin resistance 0.00 3 12200761 (1), 12386964 (1)
    About this table

    Human Gene Mutation Database: PAX4
    Genetic Association Database: PAX4
    Human Genome Epidemiology Navigator: PAX4 (11 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/76 PubMed articles for PAX4 gene (see all 76 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 5078 HGNC: 8618 AceView: PAX4 Ensembl:ENSG00000106331 euGenes: HUgn5078
    ECgene: PAX4 H-InvDB: PAX4
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for PAX4 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for PAX4:
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     TaqMan ® Genotyping Assays
      Free SNP selection tool



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