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Aliases for PART1 Gene

Subcategory (RNA class) for PART1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PART1 Gene

  • Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding) 2 3 5
  • Prostate-Specific And Androgen-Regulated CDNA 14D7 Protein 3
  • Non-Protein Coding RNA 206 2
  • NCRNA00206 3

External Ids for PART1 Gene

Previous GeneCards Identifiers for PART1 Gene

  • GC05P059935
  • GC05P061321
  • GC05P059754
  • GC05P059799
  • GC05P059819
  • GC05P059797
  • GC05P056741

Summaries for PART1 Gene

Entrez Gene Summary for PART1 Gene

  • This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]

GeneCards Summary for PART1 Gene

PART1 (Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PART1 Gene

Genomics for PART1 Gene

Regulatory Elements for PART1 Gene

Promoters for PART1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PART1 on UCSC Golden Path with GeneCards custom track

Genomic Location for PART1 Gene

Chromosome:
5
Start:
60,487,713 bp from pter
End:
60,547,657 bp from pter
Size:
59,945 bases
Orientation:
Plus strand

Genomic View for PART1 Gene

Genes around PART1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PART1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PART1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PART1 Gene

Proteins for PART1 Gene

Post-translational modifications for PART1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PART1 Gene

Domains & Families for PART1 Gene

Gene Families for PART1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PART1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PART1 Gene

Function for PART1 Gene

Phenotypes for PART1 Gene

genes like me logo Genes that share phenotypes with PART1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PART1 Gene

Localization for PART1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PART1 Gene

Pathways & Interactions for PART1 Gene

SuperPathways for PART1 Gene

No Data Available

Interacting Proteins for PART1 Gene

Gene Ontology (GO) - Biological Process for PART1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PART1 Gene

Drugs & Compounds for PART1 Gene

No Compound Related Data Available

Transcripts for PART1 Gene

Unigene Clusters for PART1 Gene

Prostate androgen-regulated transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PART1 Gene

No ASD Table

Relevant External Links for PART1 Gene

GeneLoc Exon Structure for
PART1
ECgene alternative splicing isoforms for
PART1

Expression for PART1 Gene

mRNA expression in normal human tissues for PART1 Gene

mRNA differential expression in normal tissues according to GTEx for PART1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.7), Brain - Anterior cingulate cortex (BA24) (x8.1), Brain - Cortex (x8.0), and Prostate (x4.0).

SOURCE GeneReport for Unigene cluster for PART1 Gene Hs.146312

genes like me logo Genes that share expression patterns with PART1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for PART1 Gene

Orthologs for PART1 Gene

Evolution for PART1 Gene

ENSEMBL:
Gene Tree for PART1 (if available)
TreeFam:
Gene Tree for PART1 (if available)

No data available for Orthologs for PART1 Gene

Paralogs for PART1 Gene

No data available for Paralogs for PART1 Gene

Variants for PART1 Gene

Sequence variations from dbSNP and Humsavar for PART1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs27960 -- 60,542,253(-) tcaca(C/T)gctgc intron-variant
rs26948 -- 60,541,236(-) GGGAT(A/G)TGTCT intron-variant
rs26949 -- 60,529,473(-) ATACC(A/G)TCTCA nc-transcript-variant
rs26950 -- 60,527,291(-) CAGAC(A/G)CTGCC intron-variant
rs40131 -- 60,539,575(-) AATAA(C/G)TTACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PART1 Gene

Variant ID Type Subtype PubMed ID
nsv881711 CNV Gain 21882294
nsv327281 CNV Loss 16902084

Relevant External Links for PART1 Gene

HapMap Linkage Disequilibrium report
PART1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PART1 Gene

Disorders for PART1 Gene

Relevant External Links for PART1

Genetic Association Database (GAD)
PART1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PART1

No disorders were found for PART1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PART1 Gene

Publications for PART1 Gene

  1. PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12. (PMID: 10706094) Lin B. … Nelson P.S. (Cancer Res. 2000) 2 3 23 67
  2. A long non-coding RNA signature in glioblastoma multiforme predicts survival. (PMID: 23726844) Zhang X.Q. … Leung G.K. (Neurobiol. Dis. 2013) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Genistein and daidzein downregulate prostate androgen-regulated transcript-1 (PART-1) gene expression induced by dihydrotestosterone in human prostate LNCaP cancer cells. (PMID: 12566472) Yu L. … Zhou J.R. (J. Nutr. 2003) 23

Products for PART1 Gene

Sources for PART1 Gene

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