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Aliases for PART1 Gene

Subcategory (RNA class) for PART1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PART1 Gene

  • Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding) 2 3 5
  • Prostate-Specific And Androgen-Regulated CDNA 14D7 Protein 3
  • Non-Protein Coding RNA 206 2
  • NCRNA00206 3

External Ids for PART1 Gene

Previous GeneCards Identifiers for PART1 Gene

  • GC05P059935
  • GC05P061321
  • GC05P059754
  • GC05P059799
  • GC05P059819
  • GC05P059797
  • GC05P056741

Summaries for PART1 Gene

Entrez Gene Summary for PART1 Gene

  • This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]

GeneCards Summary for PART1 Gene

PART1 (Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PART1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PART1 Gene

Genomics for PART1 Gene

GeneHancer (GH) Regulatory Elements for PART1 Gene

Promoters and enhancers for PART1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I060487 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.6 598 2.4 FOXA2 ARID4B RAD21 THRB ZSCAN9 RARA RCOR1 CREM SP5 REST PDE4D ENSG00000275634 ENSG00000273701 PART1 RPL31P8 LOC100421309
GH05I060332 Enhancer 0.6 ENCODE 10 -154.8 -154775 1.3 PKNOX1 JUN JUNB BATF ATF2 FOSL1 JUND POLR2A RCOR1 FOS PART1 RPL31P8 GC05M060305 RNU6-806P GC05M060416 PDE4D
GH05I060519 Enhancer 1.1 Ensembl ENCODE dbSUPER 4.8 +34.0 33992 3.7 HDGF PKNOX1 ZNF384 EBF1 BATF IRF4 POLR2A NFATC1 ATF7 ETV6 PDE4D PART1 DEPDC1B ENSG00000275634
GH05I060323 Enhancer 0.3 FANTOM5 17.3 -164.4 -164426 0.3 ATF2 PART1 PDE4D RPL31P8 GC05M060305 RNU6-806P GC05M060416
GH05I060439 Enhancer 0.2 FANTOM5 21.2 -48.1 -48144 0.4 PART1 PDE4D RPL31P8 SETP21
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PART1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PART1 gene promoter:

Genomic Locations for PART1 Gene

Genomic Locations for PART1 Gene
chr5:60,487,713-60,547,657
(GRCh38/hg38)
Size:
59,945 bases
Orientation:
Plus strand
chr5:59,783,540-59,843,484
(GRCh37/hg19)

Genomic View for PART1 Gene

Genes around PART1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PART1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PART1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PART1 Gene

Proteins for PART1 Gene

Post-translational modifications for PART1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PART1 Gene

Domains & Families for PART1 Gene

Gene Families for PART1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PART1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PART1 Gene

Function for PART1 Gene

Phenotypes From GWAS Catalog for PART1 Gene

Phenotypes for PART1 Gene

genes like me logo Genes that share phenotypes with PART1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PART1 Gene

Localization for PART1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PART1 Gene

Pathways & Interactions for PART1 Gene

SuperPathways for PART1 Gene

No Data Available

Interacting Proteins for PART1 Gene

Gene Ontology (GO) - Biological Process for PART1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PART1 Gene

Drugs & Compounds for PART1 Gene

No Compound Related Data Available

Transcripts for PART1 Gene

Unigene Clusters for PART1 Gene

Prostate androgen-regulated transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PART1 Gene

No ASD Table

Relevant External Links for PART1 Gene

GeneLoc Exon Structure for
PART1
ECgene alternative splicing isoforms for
PART1

Expression for PART1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PART1 Gene

mRNA differential expression in normal tissues according to GTEx for PART1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.7), Brain - Anterior cingulate cortex (BA24) (x8.1), Brain - Cortex (x8.0), and Prostate (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of PART1 Gene:

PART1

SOURCE GeneReport for Unigene cluster for PART1 Gene:

Hs.146312
genes like me logo Genes that share expression patterns with PART1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PART1 Gene

Orthologs for PART1 Gene

Evolution for PART1 Gene

ENSEMBL:
Gene Tree for PART1 (if available)
TreeFam:
Gene Tree for PART1 (if available)

No data available for Orthologs for PART1 Gene

Paralogs for PART1 Gene

No data available for Paralogs for PART1 Gene

Variants for PART1 Gene

Sequence variations from dbSNP and Humsavar for PART1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000063674 -- 60,541,152(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000105315 -- 60,524,974(+) A/G genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000205171 -- 60,537,288(+) A/G/T genic_downstream_transcript_variant, intron_variant
rs1000223715 -- 60,504,082(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000231084 -- 60,486,070(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PART1 Gene

Variant ID Type Subtype PubMed ID
esv3605191 CNV loss 21293372
nsv1018614 CNV loss 25217958
nsv327281 CNV deletion 16902084
nsv598288 CNV loss 21841781
nsv598297 CNV loss 21841781

Additional Variant Information for PART1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PART1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PART1 Gene

Disorders for PART1 Gene

Additional Disease Information for PART1

No disorders were found for PART1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PART1 Gene

Publications for PART1 Gene

  1. PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12. (PMID: 10706094) Lin B … Nelson PS (Cancer research 2000) 2 3 22 58
  2. A long non-coding RNA signature in glioblastoma multiforme predicts survival. (PMID: 23726844) Zhang XQ … Leung GK (Neurobiology of disease 2013) 2 3 58
  3. PART-1 functions as a competitive endogenous RNA for promoting tumor progression by sponging miR-143 in colorectal cancer. (PMID: 28619512) Hu Y … Tang Z (Biochemical and biophysical research communications 2017) 3 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  5. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58

Products for PART1 Gene

Sources for PART1 Gene

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