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Aliases for PART1 Gene

Subcategory (RNA class) for PART1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for PART1 Gene

  • Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding) 2 3 5
  • Prostate-Specific And Androgen-Regulated CDNA 14D7 Protein 3
  • Non-Protein Coding RNA 206 2
  • NCRNA00206 3

External Ids for PART1 Gene

Previous GeneCards Identifiers for PART1 Gene

  • GC05P059935
  • GC05P061321
  • GC05P059754
  • GC05P059799
  • GC05P059819
  • GC05P059797
  • GC05P056741

Summaries for PART1 Gene

Entrez Gene Summary for PART1 Gene

  • This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]

GeneCards Summary for PART1 Gene

PART1 (Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PART1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PART1 Gene

Genomics for PART1 Gene

Regulatory Elements for PART1 Gene

Enhancers for PART1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H060332 0.7 ENCODE 10 -154.8 -154775 1.3 PKNOX1 JUN JUNB BATF FOSL1 JUND POLR2A RCOR1 FOS RUNX3 PART1 RPL31P8 GC05M060305 RNU6-806P GC05M060416
GH05H060323 0.4 FANTOM5 17.3 -164.4 -164426 0.3 ATF2 PART1 PDE4D RPL31P8 GC05M060305 RNU6-806P GC05M060416
GH05H060439 0.3 FANTOM5 21.2 -48.1 -48144 0.4 PART1 PDE4D RPL31P8 SETP21
GH05H060519 1.3 Ensembl ENCODE dbSUPER 4.8 +34.0 33993 3.7 HDGF PKNOX1 TBL1XR1 ZNF384 EBF1 BATF POLR2A EED FOS ATF7 PART1 DEPDC1B PDE4D ENSG00000275634
GH05H060339 0.4 ENCODE 9.2 -147.7 -147748 1.3 RUNX3 RPL31P8 PART1 GC05M060305 RNU6-806P GC05M060416
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PART1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PART1 Gene

Genomic Locations for PART1 Gene
59,945 bases
Plus strand

Genomic View for PART1 Gene

Genes around PART1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PART1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PART1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PART1 Gene

Proteins for PART1 Gene

Post-translational modifications for PART1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PART1 Gene

Domains & Families for PART1 Gene

Gene Families for PART1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PART1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PART1 Gene

Function for PART1 Gene

Phenotypes for PART1 Gene

genes like me logo Genes that share phenotypes with PART1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PART1 Gene

Localization for PART1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PART1 Gene

Pathways & Interactions for PART1 Gene

SuperPathways for PART1 Gene

No Data Available

Interacting Proteins for PART1 Gene

Gene Ontology (GO) - Biological Process for PART1 Gene


No data available for Pathways by source and SIGNOR curated interactions for PART1 Gene

Drugs & Compounds for PART1 Gene

No Compound Related Data Available

Transcripts for PART1 Gene

Unigene Clusters for PART1 Gene

Prostate androgen-regulated transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PART1 Gene

No ASD Table

Relevant External Links for PART1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PART1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PART1 Gene

mRNA differential expression in normal tissues according to GTEx for PART1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.7), Brain - Anterior cingulate cortex (BA24) (x8.1), Brain - Cortex (x8.0), and Prostate (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of PART1 Gene:


SOURCE GeneReport for Unigene cluster for PART1 Gene:

genes like me logo Genes that share expression patterns with PART1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PART1 Gene

Orthologs for PART1 Gene

Evolution for PART1 Gene

Gene Tree for PART1 (if available)
Gene Tree for PART1 (if available)

No data available for Orthologs for PART1 Gene

Paralogs for PART1 Gene

No data available for Paralogs for PART1 Gene

Variants for PART1 Gene

Sequence variations from dbSNP and Humsavar for PART1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000063674 -- 60,541,152(+) AGATT(A/G)TTTCC intron-variant
rs1000105315 -- 60,524,974(+) TAAAT(A/G)ATAGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000205171 -- 60,537,288(+) TACAT(A/G/T)TAAGT intron-variant
rs1000223715 -- 60,504,082(+) AAAGA(C/T)GATAA intron-variant
rs1000231084 -- 60,486,070(+) TGAAT(A/G)CTACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PART1 Gene

Variant ID Type Subtype PubMed ID
nsv598297 CNV loss 21841781
nsv598288 CNV loss 21841781
nsv327281 CNV deletion 16902084
nsv1018614 CNV loss 25217958
esv3605191 CNV loss 21293372

Relevant External Links for PART1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PART1 Gene

Disorders for PART1 Gene

Relevant External Links for PART1

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for PART1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PART1 Gene

Publications for PART1 Gene

  1. PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12. (PMID: 10706094) Lin B … Nelson PS (Cancer research 2000) 2 3 22 60
  2. A long non-coding RNA signature in glioblastoma multiforme predicts survival. (PMID: 23726844) Zhang XQ … Leung GK (Neurobiology of disease 2013) 2 3 60
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 45 60
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 45 60
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for PART1 Gene

Sources for PART1 Gene

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