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Aliases for PART1 Gene

Subcategory (RNA class) for PART1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for PART1 Gene

  • Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding) 2 3 5
  • Prostate-Specific And Androgen-Regulated CDNA 14D7 Protein 3
  • Non-Protein Coding RNA 206 2
  • NCRNA00206 3

External Ids for PART1 Gene

Previous GeneCards Identifiers for PART1 Gene

  • GC05P059935
  • GC05P061321
  • GC05P059754
  • GC05P059799
  • GC05P059819
  • GC05P059797
  • GC05P056741

Summaries for PART1 Gene

Entrez Gene Summary for PART1 Gene

  • This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]

GeneCards Summary for PART1 Gene

PART1 (Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PART1 Gene

Genomics for PART1 Gene

Regulatory Elements for PART1 Gene

Enhancers for PART1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F060463 1.2 Ensembl ENCODE 13.5 -24.2 -24214 0.9 ZFP64 SIN3A ZNF48 ZBTB40 RARA ZNF335 GATA4 ZNF366 CREM MIXL1 PART1 RPL31P8 PDE4D ERCC8 SETP21 ENSG00000273701
GH05F060334 0.5 Ensembl 17.3 -153.1 -153113 0.4 JUND CEBPB EP300 RAD21 PART1 GC05M060305 RNU6-806P GC05M060416
GH05F060332 0.8 Ensembl ENCODE 10 -154.8 -154775 1.3 PKNOX1 JUND JUN JUNB FOS MAFK RAD21 PART1 RPL31P8 RNU6-806P GC05M060305 GC05M060416
GH05F060439 0.3 FANTOM5 21.2 -48.1 -48144 0.4 PART1 PDE4D ENSG00000280447 SETP21
GH05F060323 0.3 FANTOM5 17.2 -164.4 -164426 0.3 PART1 PDE4D RPL31P8 GC05M060305 RNU6-806P GC05M060416
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PART1 on UCSC Golden Path with GeneCards custom track

Promoters for PART1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001281182 987 1000 GATAD2A GATA3 TFAP4 SAP130 CHD1

Genomic Location for PART1 Gene

60,487,713 bp from pter
60,547,657 bp from pter
59,945 bases
Plus strand

Genomic View for PART1 Gene

Genes around PART1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PART1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PART1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PART1 Gene

Proteins for PART1 Gene

Post-translational modifications for PART1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PART1 Gene

Domains & Families for PART1 Gene

Gene Families for PART1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PART1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PART1 Gene

Function for PART1 Gene

Phenotypes for PART1 Gene

genes like me logo Genes that share phenotypes with PART1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PART1 Gene

Localization for PART1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PART1 Gene

Pathways & Interactions for PART1 Gene

SuperPathways for PART1 Gene

No Data Available

Interacting Proteins for PART1 Gene

Gene Ontology (GO) - Biological Process for PART1 Gene


No data available for Pathways by source and SIGNOR curated interactions for PART1 Gene

Transcripts for PART1 Gene

Unigene Clusters for PART1 Gene

Prostate androgen-regulated transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PART1 Gene

No ASD Table

Relevant External Links for PART1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PART1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PART1 Gene

mRNA differential expression in normal tissues according to GTEx for PART1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.7), Brain - Anterior cingulate cortex (BA24) (x8.1), Brain - Cortex (x8.0), and Prostate (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of PART1 Gene:


SOURCE GeneReport for Unigene cluster for PART1 Gene:

genes like me logo Genes that share expression patterns with PART1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for PART1 Gene

Orthologs for PART1 Gene

Evolution for PART1 Gene

Gene Tree for PART1 (if available)
Gene Tree for PART1 (if available)

No data available for Orthologs for PART1 Gene

Paralogs for PART1 Gene

No data available for Paralogs for PART1 Gene

Variants for PART1 Gene

Sequence variations from dbSNP and Humsavar for PART1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10036678 -- 60,524,174(+) ATAAG(G/T)GCTGC intron-variant, nc-transcript-variant
rs10044835 -- 60,524,352(+) CTTGG(A/C)AGGCT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs10045093 -- 60,512,428(+) CTTTG(A/G)TCATC intron-variant
rs10056275 -- 60,533,638(+) TTTCT(C/T)TTGGA intron-variant
rs10056401 -- 60,533,860(+) gatca(C/T)gaggg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PART1 Gene

Variant ID Type Subtype PubMed ID
esv3605191 CNV loss 21293372
nsv1018614 CNV loss 25217958
nsv327281 CNV deletion 16902084
nsv598288 CNV loss 21841781
nsv598297 CNV loss 21841781

Relevant External Links for PART1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PART1 Gene

Disorders for PART1 Gene

Relevant External Links for PART1

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for PART1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PART1 Gene

Publications for PART1 Gene

  1. PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12. (PMID: 10706094) Lin B. … Nelson P.S. (Cancer Res. 2000) 2 3 22 64
  2. A long non-coding RNA signature in glioblastoma multiforme predicts survival. (PMID: 23726844) Zhang X.Q. … Leung G.K. (Neurobiol. Dis. 2013) 2 3 64
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for PART1 Gene

Sources for PART1 Gene

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