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Aliases for PART1 Gene

Subcategory (RNA class) for PART1 Gene


Quality Score for this RNA gene is


Aliases for PART1 Gene

  • Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding) 2 3
  • Prostate-Specific And Androgen-Regulated CDNA 14D7 Protein 3
  • Non-Protein Coding RNA 206 2
  • NCRNA00206 3

External Ids for PART1 Gene

ORGUL Members for PART1 Gene

Previous GeneCards Identifiers for PART1 Gene

  • GC05P059935
  • GC05P061321
  • GC05P059754
  • GC05P059799
  • GC05P059819
  • GC05P059797
  • GC05P056741

Summaries for PART1 Gene

Entrez Gene Summary for PART1 Gene

  • This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]

GeneCards Summary for PART1 Gene

PART1 (Prostate Androgen-Regulated Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with PART1 include prostate adenocarcinoma and adenocarcinoma.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PART1 Gene

Genomics for PART1 Gene

Regulatory Elements for PART1 Gene

Genomic Location for PART1 Gene

60,487,713 bp from pter
60,547,657 bp from pter
59,945 bases
Plus strand

Genomic View for PART1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PART1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PART1 Gene

Proteins for PART1 Gene

Post-translational modifications for PART1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PART1 Gene

Domains for PART1 Gene

Gene Families for PART1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PART1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PART1 Gene

Function for PART1 Gene

Phenotypes for PART1 Gene

genes like me logo Genes that share phenotypes with PART1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PART1 Gene

Localization for PART1 Gene

Subcellular locations from

Jensen Localization Image for PART1 Gene COMPARTMENTS Subcellular localization image for PART1 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for PART1 Gene

Pathways for PART1 Gene

SuperPathways for PART1 Gene

No Data Available

Interacting Proteins for PART1 Gene

Gene Ontology (GO) - Biological Process for PART1 Gene


No data available for Pathways by source for PART1 Gene

Transcripts for PART1 Gene

Unigene Clusters for PART1 Gene

Prostate androgen-regulated transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PART1 Gene

No ASD Table

Relevant External Links for PART1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PART1 Gene

mRNA expression in normal human tissues for PART1 Gene

mRNA differential expression in normal tissues according to GTEx for PART1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (9.7), Brain - Anterior cingulate cortex (BA24) (8.1), Brain - Cortex (8.0), and Prostate (4.0).

SOURCE GeneReport for Unigene cluster for PART1 Gene Hs.146312

genes like me logo Genes that share expressions with PART1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for PART1 Gene

Orthologs for PART1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for PART1 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia UN 16
Species with no ortholog for PART1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PART1 Gene

Gene Tree for PART1 (if available)
Gene Tree for PART1 (if available)

Paralogs for PART1 Gene

No data available for Paralogs for PART1 Gene

Variants for PART1 Gene

Sequence variations from dbSNP and Humsavar for PART1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs26948 -- 60,541,236(-) GGGAT(A/G)TGTCT intron-variant
rs26949 -- 60,529,473(-) ATACC(A/G)TCTCA nc-transcript-variant
rs26950 -- 60,527,291(-) CAGAC(A/G)CTGCC intron-variant
rs26953 -- 60,518,487(-) TTGTT(C/T)TCTTT intron-variant
rs26954 -- 60,519,016(-) CCCAG(C/T)TGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PART1 Gene

Variant ID Type Subtype PubMed ID
nsv881711 CNV Gain 21882294
nsv327281 CNV Loss 16902084

Relevant External Links for PART1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PART1 Gene

Disorders for PART1 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for PART1 Gene in MalaCards »

(2) Diseases for PART1 Gene

(1) University of Copenhagen DISEASES for PART1 Gene

Relevant External Links for PART1

Genetic Association Database (GAD)
genes like me logo Genes that share disorders with PART1: view

No data available for OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships and Genatlas for PART1 Gene

Publications for PART1 Gene

  1. PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12. (PMID: 10706094) Lin B. … Nelson P.S. (Cancer Res. 2000) 2 3 23
  2. A long non-coding RNA signature in glioblastoma multiforme predicts survival. (PMID: 23726844) Zhang X.Q. … Leung G.K. (Neurobiol. Dis. 2013) 2 3
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 48
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 48
  5. Genistein and daidzein downregulate prostate androgen-regulated transcript-1 (PART-1) gene expression induced by dihydrotestosterone in human prostate LNCaP cancer cells. (PMID: 12566472) Yu L. … Zhou J.R. (J. Nutr. 2003) 23

Products for PART1 Gene

Sources for PART1 Gene

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