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Aliases for PARP3 Gene

Aliases for PARP3 Gene

  • Poly (ADP-Ribose) Polymerase Family, Member 3 2 3
  • ADP-Ribosyltransferase (NAD+; Poly (ADP-Ribose) Polymerase)-Like 3 2 3
  • ADP-Ribosyltransferase Diphtheria Toxin-Like 3 3 4
  • NAD(+) ADP-Ribosyltransferase 3 3 4
  • Poly(ADP-Ribose) Synthetase-3 2 3
  • NAD+ ADP-Ribosyltransferase 3 2 3
  • Poly[ADP-Ribose] Synthase 3 3 4
  • PADPRT-3 3 4
  • ADPRTL3 3 4
  • ADPRT-3 3 4
  • ADPRT3 3 4
  • ARTD3 3 4
  • IRT1 3 4
  • ADP-Ribosyltransferase (NAD+; Poly (ADP-Ribose) Polymerase)-Like 2 3
  • Poly(ADP-Ribose) Polymerase 3 2
  • Poly[ADP-Ribose] Synthetase 3 3
  • EC 2.4.2.30 4
  • ADPRTL2 3
  • HPARP-3 4
  • PARP-3 4

External Ids for PARP3 Gene

Previous HGNC Symbols for PARP3 Gene

  • ADPRTL3

Summaries for PARP3 Gene

Entrez Gene Summary for PARP3 Gene

  • The protein encoded by this gene belongs to the PARP family. These enzymes modify nuclear proteins by poly-ADP-ribosylation, which is required for DNA repair, regulation of apoptosis, and maintenance of genomic stability. This gene encodes the poly(ADP-ribosyl)transferase 3, which is preferentially localized to the daughter centriole throughout the cell cycle. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for PARP3 Gene

PARP3 (Poly (ADP-Ribose) Polymerase Family, Member 3) is a Protein Coding gene. Among its related pathways are Apoptotic Pathways in Synovial Fibroblasts and NAD metabolism. GO annotations related to this gene include NAD+ ADP-ribosyltransferase activity. An important paralog of this gene is PARP2.

UniProtKB/Swiss-Prot for PARP3 Gene

  • Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks. May link the DNA damage surveillance network to the mitotic fidelity checkpoint. Negatively influences the G1/S cell cycle progression without interfering with centrosome duplication. Binds DNA. May be involved in the regulation of PRC2 and PRC3 complex-dependent gene silencing.

Tocris Summary for PARP3 Gene

  • Poly (ADP-ribose) polymerase (PARP) catalyzes the post-translational modification of proteins by the addition of multiple ADP-ribose moieties. PARP transfers ADP-ribose from nicotinamide dinucleotide (NAD) to Glu/Asp residues on the substrate protein.

Gene Wiki entry for PARP3 Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PARP3 Gene

Genomics for PARP3 Gene

Regulatory Elements for PARP3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for PARP3 Gene

Chromosome:
3
Start:
51,942,287 bp from pter
End:
51,948,867 bp from pter
Size:
6,581 bases
Orientation:
Plus strand

Genomic View for PARP3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PARP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PARP3 Gene

Proteins for PARP3 Gene

  • Protein details for PARP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6F1-PARP3_HUMAN
    Recommended name:
    Poly [ADP-ribose] polymerase 3
    Protein Accession:
    Q9Y6F1
    Secondary Accessions:
    • Q8NER9
    • Q96CG2
    • Q9UG81

    Protein attributes for PARP3 Gene

    Size:
    533 amino acids
    Molecular mass:
    60070 Da
    Quaternary structure:
    • Interacts with PRKDC and PARP1. Interacts with XRCC5; the interaction is dependent on nucleic acids. Interacts with XRCC6; the interaction is dependent on nucleic acids. Interacts with EZH2, HDAC1, HDAC2, SUZ12, YY1, LRIG3 and LIG4.

    Three dimensional structures from OCA and Proteopedia for PARP3 Gene

    Alternative splice isoforms for PARP3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PARP3 Gene

Proteomics data for PARP3 Gene at MOPED

Post-translational modifications for PARP3 Gene

Other Protein References for PARP3 Gene

Antibody Products

No data available for DME Specific Peptides for PARP3 Gene

Domains & Families for PARP3 Gene

Gene Families for PARP3 Gene

Suggested Antigen Peptide Sequences for PARP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y6F1

UniProtKB/Swiss-Prot:

PARP3_HUMAN :
  • According to PubMed:10329013, the N-terminal domain (54 amino acids) of isoform 2 is responsible for its centrosomal localization. The C-terminal region contains the catalytic domain
Domain:
  • According to PubMed:10329013, the N-terminal domain (54 amino acids) of isoform 2 is responsible for its centrosomal localization. The C-terminal region contains the catalytic domain
  • Contains 1 PARP alpha-helical domain.
  • Contains 1 PARP catalytic domain.
genes like me logo Genes that share domains with PARP3: view

Function for PARP3 Gene

Molecular function for PARP3 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
NAD(+) + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
UniProtKB/Swiss-Prot Function:
Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks. May link the DNA damage surveillance network to the mitotic fidelity checkpoint. Negatively influences the G1/S cell cycle progression without interfering with centrosome duplication. Binds DNA. May be involved in the regulation of PRC2 and PRC3 complex-dependent gene silencing.

Enzyme Numbers (IUBMB) for PARP3 Gene

Gene Ontology (GO) - Molecular Function for PARP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity TAS 10338144
GO:0003950 NAD+ ADP-ribosyltransferase activity IDA 21211721
genes like me logo Genes that share ontologies with PARP3: view
genes like me logo Genes that share phenotypes with PARP3: view

Animal Model Products

miRNA for PARP3 Gene

miRTarBase miRNAs that target PARP3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PARP3

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for PARP3 Gene

Localization for PARP3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PARP3 Gene

Nucleus. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole. Note=Core component of the centrosome. Preferentially localized to the daughter centriole throughout the cell cycle. According to PubMed:16924674, it is almost exclusively localized in the nucleus and appears in numerous small foci and a small number of larger foci whereas a centrosomal location has not been detected.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PARP3 Gene COMPARTMENTS Subcellular localization image for PARP3 gene
Compartment Confidence
cytoskeleton 5
nucleus 5

Gene Ontology (GO) - Cellular Components for PARP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005814 centriole IEA --
GO:0035861 site of double-strand break IDA 21270334
genes like me logo Genes that share ontologies with PARP3: view

Pathways & Interactions for PARP3 Gene

genes like me logo Genes that share pathways with PARP3: view

Pathways by source for PARP3 Gene

1 KEGG pathway for PARP3 Gene
1 GeneGo (Thomson Reuters) pathway for PARP3 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for PARP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000723 telomere maintenance IMP 21270334
GO:0006281 DNA repair TAS 7260241
GO:0006302 double-strand break repair IMP 21211721
GO:0006471 protein ADP-ribosylation IDA 21270334
GO:0051106 positive regulation of DNA ligation IGI 21211721
genes like me logo Genes that share ontologies with PARP3: view

No data available for SIGNOR curated interactions for PARP3 Gene

Drugs & Compounds for PARP3 Gene

(10) Drugs for PARP3 Gene - From: HMDB, Tocris, ApexBio, DrugBank, and FDA Approved Drugs

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Olaparib Approved Pharma Target, Inhibitor PARP inhibitor, PARP Inhibitors, Other, Poly(ADPRIBOSE) polymerase (PARP) inhibitors 0
Lynparza Approved December 2014 Pharma 0
2-methyl-3,5,7,8-tetrahydro-4H-thiopyrano[4,3-d]pyrimidin-4-one Experimental Pharma Target 0
4-[3-(1,4-diazepan-1-ylcarbonyl)-4-fluorobenzyl]phthalazin-1(2H)-one Experimental Pharma Target 0
N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE Experimental Pharma Target 0

(5) Additional Compounds for PARP3 Gene - From: Tocris and NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
3-Aminobenzamide
3544-24-9
4-HQN
491-36-1
DR 2313
284028-90-6
PJ 34 hydrochloride
344458-15-7
adpribose
genes like me logo Genes that share compounds with PARP3: view

Transcripts for PARP3 Gene

Unigene Clusters for PARP3 Gene

Poly (ADP-ribose) polymerase family, member 3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PARP3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PARP3 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c
SP1: - - - - - -
SP2: - - - - - -
SP3: - - - -
SP4: - -
SP5: - -
SP6: - -
SP7:
SP8:
SP9:

Relevant External Links for PARP3 Gene

GeneLoc Exon Structure for
PARP3
ECgene alternative splicing isoforms for
PARP3

Expression for PARP3 Gene

mRNA expression in normal human tissues for PARP3 Gene

Protein differential expression in normal tissues from HIPED for PARP3 Gene

This gene is overexpressed in Breast (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PARP3 Gene



SOURCE GeneReport for Unigene cluster for PARP3 Gene Hs.271742

mRNA Expression by UniProt/SwissProt for PARP3 Gene

Q9Y6F1-PARP3_HUMAN
Tissue specificity: Widely expressed; the highest levels are in the kidney, skeletal muscle, liver, heart and spleen; also detected in pancreas, lung, placenta, brain, leukocytes, colon, small intestine, ovary, testis, prostate and thymus
genes like me logo Genes that share expression patterns with PARP3: view

Protein tissue co-expression partners for PARP3 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for PARP3 Gene

Orthologs for PARP3 Gene

This gene was present in the common ancestor of animals.

Orthologs for PARP3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia PARP3 35
  • 82.87 (n)
  • 77.53 (a)
PARP3 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PARP3 35
  • 86.13 (n)
  • 82.49 (a)
PARP3 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Parp3 35
  • 82.42 (n)
  • 81.4 (a)
Parp3 16
Parp3 36
  • 80 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PARP3 35
  • 98.95 (n)
  • 97.22 (a)
PARP3 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Parp3 35
  • 81.88 (n)
  • 81.75 (a)
oppossum
(Monodelphis domestica)
Mammalia PARP3 36
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PARP3 36
  • 58 (a)
OneToOne
chicken
(Gallus gallus)
Aves PARP3 35
  • 68.26 (n)
  • 62.26 (a)
PARP3 36
  • 60 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PARP3 36
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia parp3 35
  • 64.11 (n)
  • 61.3 (a)
Str.15161 35
zebrafish
(Danio rerio)
Actinopterygii parp3 35
  • 59.82 (n)
  • 56.24 (a)
zgc66157 35
parp3 36
  • 51 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y75B7B.2 36
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 9 (a)
OneToOne
Species with no ortholog for PARP3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PARP3 Gene

ENSEMBL:
Gene Tree for PARP3 (if available)
TreeFam:
Gene Tree for PARP3 (if available)

Paralogs for PARP3 Gene

Paralogs for PARP3 Gene

(1) SIMAP similar genes for PARP3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PARP3: view

Variants for PARP3 Gene

Sequence variations from dbSNP and Humsavar for PARP3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs188953 -- 51,948,235(-) CCCTA(C/T)GCTCT intron-variant
rs323868 -- 51,944,311(-) CTGAG(C/T)GCCCT intron-variant
rs323869 -- 51,944,696(-) CCAGA(A/G)GGGAG intron-variant
rs323870 - 51,945,169(+) CAGCC(A/G)GCCCC reference, missense
rs380945 -- 51,948,804(-) tgctg(A/G)gtgaa utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for PARP3 Gene

Variant ID Type Subtype PubMed ID
nsv520211 CNV Gain 19592680
nsv508922 CNV Insertion 20534489
nsv876780 CNV Loss 21882294

Variation tolerance for PARP3 Gene

Residual Variation Intolerance Score: 95.31% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.58; 65.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PARP3 Gene

HapMap Linkage Disequilibrium report
PARP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PARP3 Gene

Disorders for PARP3 Gene

Relevant External Links for PARP3

Genetic Association Database (GAD)
PARP3
Human Genome Epidemiology (HuGE) Navigator
PARP3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PARP3
genes like me logo Genes that share disorders with PARP3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PARP3 Gene

Publications for PARP3 Gene

  1. A human poly(ADP-ribose) polymerase gene family (ADPRTL): cDNA cloning of two novel poly(ADP-ribose) polymerase homologues. (PMID: 10329013) Johansson M. (Genomics 1999) 2 23 67
  2. Assessment of PARP-3 distribution in tissues of cynomolgous monkeys. (PMID: 19332431) Rouleau M. … Poirier G.G. (J. Histochem. Cytochem. 2009) 23 67
  3. The diverse biological roles of mammalian PARPS, a small but powerful family of poly-ADP-ribose polymerases. (PMID: 17981777) Hassa P.O. … Hottiger M.O. (Front. Biosci. 2008) 23 67
  4. Poly(ADP-ribose) polymerase inhibitors: new pharmacological functions and potential clinical implications. (PMID: 17430191) de la Lastra C.A. … SA!nchez-Fidalgo S. (Curr. Pharm. Des. 2007) 23 67
  5. Arabidopsis cpFtsY mutants exhibit pleiotropic defects including an inability to increase iron deficiency-inducible root Fe(III) chelate reductase activity. (PMID: 16813577) Durrett T.P. … Rogers E.E. (Plant J. 2006) 23 67

Products for PARP3 Gene

Sources for PARP3 Gene

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